Wall clock time and date at job start Tue Mar 31 2020 02:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00160 * 2 1 4 4 H 1.48502 * 109.46974 * 269.99636 * 3 2 1 5 5 H 1.48493 * 109.46877 * 29.99763 * 3 2 1 6 6 H 1.48502 * 109.46687 * 149.99812 * 3 2 1 7 7 C 1.38951 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99698 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99787 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00524 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00150 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47415 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00081 * 179.97438 * 13 12 10 15 15 O 1.21591 * 120.00078 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00259 * 179.97438 * 14 13 12 17 17 C 1.47579 * 134.49434 * 179.97438 * 16 14 13 18 18 C 1.53946 * 86.11887 * 204.63976 * 17 16 14 19 19 O 1.42903 * 113.73963 * 90.73560 * 18 17 16 20 20 C 1.52998 * 113.74753 * 221.94117 * 18 17 16 21 21 C 1.53001 * 117.49910 * 246.82352 * 20 18 17 22 22 C 1.52996 * 117.50108 * 178.16178 * 20 18 17 23 23 C 1.47588 * 134.49071 * 0.02562 * 16 14 13 24 24 H 0.97003 * 119.99841 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00429 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.47429 * 59.99584 * 12 10 9 27 27 H 1.09009 * 109.46982 * 300.00447 * 12 10 9 28 28 H 0.97001 * 120.00036 * 0.02562 * 13 12 10 29 29 H 1.09001 * 113.76568 * 90.34559 * 17 16 14 30 30 H 1.08996 * 113.77235 * 318.94314 * 17 16 14 31 31 H 0.96700 * 114.00311 * 309.67292 * 19 18 17 32 32 H 1.08997 * 115.54757 * 32.49435 * 20 18 17 33 33 H 1.09000 * 117.49801 * 359.97438 * 21 20 18 34 34 H 1.09001 * 117.49468 * 145.01430 * 21 20 18 35 35 H 1.08997 * 117.50088 * 214.97513 * 22 20 18 36 36 H 1.08999 * 117.50048 * 359.97438 * 22 20 18 37 37 H 1.08997 * 113.76785 * 41.05568 * 23 16 14 38 38 H 1.08997 * 113.76687 * 269.65920 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5578 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2436 -4.8630 0.0011 13 7 2.1955 -5.9765 0.0016 14 6 1.7462 -7.2472 0.0027 15 8 0.5508 -7.4694 0.0028 16 7 2.6219 -8.2716 0.0026 17 6 2.4938 -9.7418 0.0041 18 6 3.8943 -9.7587 0.6429 19 8 3.8754 -9.7334 2.0716 20 6 4.8163 -10.8410 0.0777 21 6 5.2257 -11.9798 1.0139 22 6 6.2448 -10.9070 0.6218 23 6 4.0943 -8.3737 0.0021 24 1 -0.4850 0.8401 -0.0004 25 1 0.3532 -2.3907 0.0005 26 1 0.6165 -4.9209 -0.8886 27 1 0.6172 -4.9205 0.8914 28 1 3.1492 -5.7993 0.0019 29 1 2.4605 -10.1809 -0.9931 30 1 1.7070 -10.1137 0.6604 31 1 3.3199 -9.0356 2.4453 32 1 4.6669 -11.0834 -0.9744 33 1 4.8385 -11.9577 2.0326 34 1 5.3458 -12.9714 0.5776 35 1 7.0350 -11.1933 -0.0722 36 1 6.5279 -10.1791 1.3821 37 1 4.5848 -7.6535 0.6568 38 1 4.5317 -8.4103 -0.9956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377042240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:20 Heat of formation + Delta-G solvation = -46.574390 kcal Electronic energy + Delta-G solvation = -21798.401065 eV Core-core repulsion = 18257.455232 eV Total energy + Delta-G solvation = -3540.945832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98409 -39.09790 -38.04962 -36.48601 -35.03112 -34.43687 -33.64771 -31.40363 -29.59283 -27.20737 -26.45627 -24.56235 -23.31446 -22.54522 -20.44727 -19.79169 -19.56366 -18.28682 -17.88137 -16.89188 -16.37713 -16.07521 -15.63403 -15.45110 -15.10551 -14.72339 -14.39534 -14.10115 -14.07166 -13.54742 -13.37974 -13.33360 -12.60373 -12.25455 -12.01502 -11.93653 -11.74156 -11.68726 -11.64179 -11.13778 -11.00153 -10.63125 -10.47147 -10.33265 -9.99772 -9.87233 -9.65219 -9.05375 -8.64945 -8.57518 -8.11687 -6.52830 -3.94978 2.40382 3.10508 3.21088 3.26234 3.29244 3.31956 3.71090 3.72969 3.85472 4.11027 4.22079 4.28757 4.53610 4.77724 4.84526 4.86873 5.04555 5.13840 5.15830 5.27854 5.35505 5.42290 5.50185 5.51678 5.75284 5.86488 5.90192 5.96036 5.97129 6.06429 6.70695 7.15842 7.31216 7.44641 7.90694 8.11878 8.43418 8.72116 9.03065 9.37693 9.85474 10.64054 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.036028 B = 0.002903 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.981037 B = 9642.877844 C =10182.694716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.720 5.720 14 C 0.729 3.271 15 O -0.593 6.593 16 N -0.669 5.669 17 C 0.105 3.895 18 C 0.136 3.864 19 O -0.534 6.534 20 C -0.143 4.143 21 C -0.165 4.165 22 C -0.168 4.168 23 C 0.075 3.925 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.407 0.593 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.387 0.613 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 -20.033 0.421 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.377 5.377 14 C 0.431 3.569 15 O -0.471 6.471 16 N -0.410 5.410 17 C -0.019 4.019 18 C 0.093 3.907 19 O -0.340 6.340 20 C -0.161 4.161 21 C -0.201 4.201 22 C -0.205 4.205 23 C -0.049 4.049 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.244 0.756 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.236 0.764 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.739 -20.278 0.361 21.708 hybrid contribution -0.275 1.595 -0.130 1.623 sum 7.464 -18.684 0.231 20.121 Atomic orbital electron populations 1.69618 1.06019 1.28551 1.49257 1.25334 0.95674 0.99951 0.96771 0.85806 0.79225 0.80464 0.78496 1.20257 1.20777 1.19309 1.19725 0.93451 0.81979 1.48301 0.87684 1.41786 1.09504 1.04438 1.62589 1.19733 0.88281 0.84974 0.85605 1.90490 1.13745 1.86847 1.57413 1.20815 0.91190 0.84831 1.03193 1.44734 1.11317 1.03053 1.78610 1.15335 0.83991 0.79798 0.77753 1.90920 1.13474 1.83837 1.58890 1.49026 1.06636 1.05862 1.79497 1.23774 0.97773 0.78797 1.01556 1.21990 0.93591 0.93255 0.81817 1.86402 1.72155 1.58245 1.17204 1.22030 0.96534 0.98707 0.98848 1.22905 1.02977 0.93444 1.00824 1.22936 0.91424 1.02613 1.03567 1.23971 0.81733 0.97084 1.02089 0.91564 0.76996 0.89978 0.89961 0.75615 0.89198 0.89430 0.76402 0.86023 0.87781 0.88918 0.88684 0.88277 0.89334 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.91 13.05 55.50 0.72 -23.19 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 7 C -0.31 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.65 5.29 -10.96 -0.06 -13.71 16 10 C 0.43 9.90 7.85 -10.99 -0.09 9.81 16 11 O -0.60 -15.36 15.24 5.55 0.08 -15.27 16 12 C 0.13 2.43 6.15 -5.19 -0.03 2.39 16 13 N -0.72 -12.55 5.53 -66.41 -0.37 -12.92 16 14 C 0.73 12.38 8.76 -86.92 -0.76 11.62 16 15 O -0.59 -12.10 17.07 5.29 0.09 -12.01 16 16 N -0.67 -8.47 3.49 -184.02 -0.64 -9.12 16 17 C 0.10 1.03 8.20 -2.98 -0.02 1.01 16 18 C 0.14 1.17 1.69 -89.71 -0.15 1.01 16 19 O -0.53 -5.02 12.24 -35.23 -0.43 -5.45 16 20 C -0.14 -1.00 5.44 -90.62 -0.49 -1.50 16 21 C -0.16 -1.16 9.96 -26.69 -0.27 -1.42 16 22 C -0.17 -1.16 10.13 -26.69 -0.27 -1.43 16 23 C 0.07 0.71 7.78 -2.99 -0.02 0.69 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 27 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16 28 H 0.41 6.98 7.05 -40.82 -0.29 6.69 16 29 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.39 3.26 8.89 45.56 0.40 3.66 16 32 H 0.12 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.10 0.86 7.41 -51.93 -0.38 0.48 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -32.55 331.96 -7.29 -39.84 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -4.32 Total: 17.01 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: -2.35 Total: 14.32 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.34 Total: -58.93 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.26 Total: -32.73 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.55 -7.29 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377042240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.735 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds