Wall clock time and date at job start Tue Mar 31 2020 02:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00160 * 2 1 4 4 H 1.48502 * 109.46974 * 269.99636 * 3 2 1 5 5 H 1.48493 * 109.46877 * 29.99763 * 3 2 1 6 6 H 1.48502 * 109.46687 * 149.99812 * 3 2 1 7 7 C 1.38951 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99698 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99787 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00524 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00150 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47415 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00081 * 179.97438 * 13 12 10 15 15 O 1.21591 * 120.00078 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00259 * 179.97438 * 14 13 12 17 17 C 1.47579 * 134.49434 * 179.97438 * 16 14 13 18 18 C 1.53946 * 86.11887 * 204.63976 * 17 16 14 19 19 O 1.42903 * 113.73963 * 90.73560 * 18 17 16 20 20 C 1.52998 * 113.74753 * 221.94117 * 18 17 16 21 21 C 1.53001 * 117.49910 * 246.82352 * 20 18 17 22 22 C 1.52996 * 117.50108 * 178.16178 * 20 18 17 23 23 C 1.47588 * 134.49071 * 0.02562 * 16 14 13 24 24 H 0.97003 * 119.99841 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00429 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.47429 * 59.99584 * 12 10 9 27 27 H 1.09009 * 109.46982 * 300.00447 * 12 10 9 28 28 H 0.97001 * 120.00036 * 0.02562 * 13 12 10 29 29 H 1.09001 * 113.76568 * 90.34559 * 17 16 14 30 30 H 1.08996 * 113.77235 * 318.94314 * 17 16 14 31 31 H 0.96700 * 114.00311 * 309.67292 * 19 18 17 32 32 H 1.08997 * 115.54757 * 32.49435 * 20 18 17 33 33 H 1.09000 * 117.49801 * 359.97438 * 21 20 18 34 34 H 1.09001 * 117.49468 * 145.01430 * 21 20 18 35 35 H 1.08997 * 117.50088 * 214.97513 * 22 20 18 36 36 H 1.08999 * 117.50048 * 359.97438 * 22 20 18 37 37 H 1.08997 * 113.76785 * 41.05568 * 23 16 14 38 38 H 1.08997 * 113.76687 * 269.65920 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5578 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2436 -4.8630 0.0011 13 7 2.1955 -5.9765 0.0016 14 6 1.7462 -7.2472 0.0027 15 8 0.5508 -7.4694 0.0028 16 7 2.6219 -8.2716 0.0026 17 6 2.4938 -9.7418 0.0041 18 6 3.8943 -9.7587 0.6429 19 8 3.8754 -9.7334 2.0716 20 6 4.8163 -10.8410 0.0777 21 6 5.2257 -11.9798 1.0139 22 6 6.2448 -10.9070 0.6218 23 6 4.0943 -8.3737 0.0021 24 1 -0.4850 0.8401 -0.0004 25 1 0.3532 -2.3907 0.0005 26 1 0.6165 -4.9209 -0.8886 27 1 0.6172 -4.9205 0.8914 28 1 3.1492 -5.7993 0.0019 29 1 2.4605 -10.1809 -0.9931 30 1 1.7070 -10.1137 0.6604 31 1 3.3199 -9.0356 2.4453 32 1 4.6669 -11.0834 -0.9744 33 1 4.8385 -11.9577 2.0326 34 1 5.3458 -12.9714 0.5776 35 1 7.0350 -11.1933 -0.0722 36 1 6.5279 -10.1791 1.3821 37 1 4.5848 -7.6535 0.6568 38 1 4.5317 -8.4103 -0.9956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377042240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:19 Heat of formation + Delta-G solvation = -72.547883 kcal Electronic energy + Delta-G solvation = -21799.527360 eV Core-core repulsion = 18257.455232 eV Total energy + Delta-G solvation = -3542.072127 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.93653 -40.56194 -39.62378 -37.19225 -36.26440 -35.83771 -35.29392 -33.39688 -30.77629 -28.62172 -27.35272 -26.31426 -24.25026 -23.07239 -21.40693 -21.25012 -20.88068 -20.09422 -19.16607 -17.86974 -17.55839 -17.28653 -17.05661 -16.61259 -16.48799 -16.01281 -15.95057 -15.47561 -15.18281 -15.13800 -14.30796 -14.26204 -13.97668 -13.66916 -13.55562 -13.27353 -12.91632 -12.86451 -12.47256 -12.45701 -12.23499 -12.13184 -11.63101 -11.58600 -11.51949 -10.97911 -10.58826 -10.57655 -10.40834 -10.11744 -9.69186 -8.52405 -6.02883 1.26949 1.35538 1.42823 1.55537 1.86694 2.01071 2.26190 2.67431 2.74322 3.03663 3.12634 3.14707 3.50378 3.58742 3.82874 4.14740 4.21120 4.26971 4.33876 4.38434 4.40381 4.43098 4.52951 4.57241 4.67871 4.91450 4.94010 5.14811 5.24563 5.32870 5.37125 5.42074 5.90174 6.03371 6.45828 6.55225 6.85475 7.01655 7.36789 7.44992 7.91869 8.64536 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.036028 B = 0.002903 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.981037 B = 9642.877844 C =10182.694716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.141 3.859 13 N -0.721 5.721 14 C 0.726 3.274 15 O -0.632 6.632 16 N -0.669 5.669 17 C 0.101 3.899 18 C 0.147 3.853 19 O -0.543 6.543 20 C -0.142 4.142 21 C -0.167 4.167 22 C -0.168 4.168 23 C 0.074 3.926 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.408 0.592 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.389 0.611 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.661 -20.817 -0.162 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.378 5.378 14 C 0.429 3.571 15 O -0.513 6.513 16 N -0.409 5.409 17 C -0.022 4.022 18 C 0.104 3.896 19 O -0.349 6.349 20 C -0.160 4.160 21 C -0.204 4.204 22 C -0.205 4.205 23 C -0.048 4.048 24 H 0.090 0.910 25 H 0.233 0.767 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.246 0.754 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.239 0.761 32 H 0.161 0.839 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.686 -21.109 -0.219 22.827 hybrid contribution -0.524 1.734 0.076 1.813 sum 8.162 -19.375 -0.144 21.024 Atomic orbital electron populations 1.69684 1.07042 1.29687 1.49193 1.26151 0.96545 1.02733 0.95724 0.84855 0.77917 0.76399 0.78743 1.19511 1.19640 1.19391 1.19739 0.92971 0.83478 1.50456 0.89527 1.41833 1.09611 1.04576 1.63329 1.20352 0.88089 0.85825 0.83652 1.90465 1.15141 1.87524 1.58088 1.20610 0.90962 0.83093 1.04061 1.44646 1.10969 1.03083 1.79080 1.15440 0.84008 0.80103 0.77578 1.90886 1.15314 1.84418 1.60729 1.49131 1.07747 1.06141 1.77854 1.24066 0.98347 0.76876 1.02862 1.21943 0.93096 0.93253 0.81270 1.86413 1.72227 1.58435 1.17863 1.22128 0.96126 0.97985 0.99799 1.22925 1.02968 0.94331 1.00147 1.22975 0.91765 1.02207 1.03547 1.24228 0.79665 0.97578 1.03367 0.91028 0.76679 0.89085 0.89010 0.75444 0.86994 0.90130 0.76137 0.83859 0.89380 0.87282 0.87045 0.89530 0.89516 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.74 13.05 21.66 0.28 -48.46 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 1.00 41.64 29.55 68.60 2.03 43.67 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.34 -18.58 9.68 84.04 0.81 -17.76 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.16 5.29 -306.98 -1.62 -29.79 16 10 C 0.43 20.20 7.85 87.66 0.69 20.88 16 11 O -0.62 -32.34 15.24 -3.07 -0.05 -32.38 16 12 C 0.14 5.33 6.15 85.63 0.53 5.85 16 13 N -0.72 -24.83 5.53 -482.28 -2.67 -27.49 16 14 C 0.73 24.27 8.76 179.06 1.57 25.84 16 15 O -0.63 -25.66 17.07 -4.00 -0.07 -25.72 16 16 N -0.67 -16.13 3.49 -858.22 -3.00 -19.13 16 17 C 0.10 1.82 8.20 86.48 0.71 2.53 16 18 C 0.15 2.26 1.69 -10.15 -0.02 2.24 16 19 O -0.54 -9.72 12.24 -148.98 -1.82 -11.54 16 20 C -0.14 -1.62 5.44 -10.80 -0.06 -1.68 16 21 C -0.17 -2.00 9.96 30.62 0.30 -1.70 16 22 C -0.17 -1.95 10.13 30.62 0.31 -1.64 16 23 C 0.07 1.28 7.78 86.47 0.67 1.95 16 24 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 25 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 26 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 27 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 28 H 0.41 13.85 7.05 -92.71 -0.65 13.20 16 29 H 0.11 1.56 8.09 -2.39 -0.02 1.54 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.39 6.40 8.89 -74.06 -0.66 5.74 16 32 H 0.14 1.05 8.13 -2.39 -0.02 1.03 16 33 H 0.09 1.36 7.41 -2.39 -0.02 1.34 16 34 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.11 1.58 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -69.38 331.96 -1.86 -71.24 By element: Atomic # 1 Polarization: 44.13 SS G_CDS: -0.93 Total: 43.20 kcal Atomic # 6 Polarization: 30.43 SS G_CDS: 5.99 Total: 36.41 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -7.00 Total: -124.87 kcal Atomic # 8 Polarization: -67.71 SS G_CDS: -1.94 Total: -69.65 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -69.38 -1.86 -71.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377042240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.307 kcal (2) G-P(sol) polarization free energy of solvation -69.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds