Wall clock time and date at job start Tue Mar 31 2020 02:00:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46505 * 109.47110 * 2 1
4 4 C 1.34943 * 126.03896 * 124.99800 * 3 2 1
5 5 C 1.35315 * 107.74487 * 180.02562 * 4 3 2
6 6 C 1.50701 * 126.03777 * 179.97438 * 5 4 3
7 7 H 1.08996 * 109.46979 * 352.99285 * 6 5 4
8 8 C 1.53241 * 109.46662 * 112.98014 * 6 5 4
9 9 S 1.81743 * 108.79817 * 177.66114 * 8 6 5
10 10 O 1.42107 * 109.46879 * 189.42212 * 9 8 6
11 11 C 1.81745 * 102.30795 * 305.46149 * 9 8 6
12 12 C 1.53237 * 108.79642 * 54.53657 * 11 9 8
13 13 N 1.46373 * 109.49324 * 302.34743 * 12 11 9
14 14 C 1.36933 * 119.64646 * 245.10884 * 13 12 11
15 15 H 1.08005 * 119.99970 * 214.39244 * 14 13 12
16 16 C 1.38809 * 120.00329 * 34.39318 * 14 13 12
17 17 N 1.31626 * 119.99601 * 11.17455 * 16 14 13
18 18 Si 1.86793 * 120.00450 * 191.17465 * 16 14 13
19 19 H 1.48503 * 109.46858 * 59.99793 * 18 16 14
20 20 H 1.48502 * 109.47215 * 179.97438 * 18 16 14
21 21 H 1.48500 * 109.47473 * 300.00050 * 18 16 14
22 22 C 1.39870 * 107.92095 * 0.02562 * 5 4 3
23 23 N 1.30830 * 108.20409 * 359.97438 * 22 5 4
24 24 H 1.08998 * 109.46921 * 60.00258 * 1 2 3
25 25 H 1.08996 * 109.46731 * 179.97438 * 1 2 3
26 26 H 1.08996 * 109.47331 * 300.00141 * 1 2 3
27 27 H 1.09004 * 109.47485 * 240.00050 * 2 1 3
28 28 H 1.08998 * 109.46921 * 119.99742 * 2 1 3
29 29 H 1.07993 * 126.12779 * 0.26504 * 4 3 2
30 30 H 1.08997 * 109.58697 * 297.45467 * 8 6 5
31 31 H 1.09002 * 109.58103 * 57.86689 * 8 6 5
32 32 H 1.09000 * 109.58136 * 174.33491 * 11 9 8
33 33 H 1.09005 * 109.58138 * 294.74796 * 11 9 8
34 34 H 1.09003 * 109.46613 * 62.35018 * 12 11 9
35 35 H 1.08997 * 109.47148 * 182.34216 * 12 11 9
36 36 H 0.96999 * 119.99965 * 180.02562 * 17 16 14
37 37 H 1.08004 * 125.89785 * 179.97438 * 22 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.8730 1.9212 0.8939
5 6 3.0712 3.2138 0.5463
6 6 3.9538 4.2003 1.2665
7 1 4.3197 3.7531 2.1907
8 6 5.1424 4.5697 0.3725
9 16 6.1562 5.8110 1.2295
10 8 7.1337 6.3239 0.3345
11 6 4.9416 7.1087 1.6085
12 6 3.7734 6.4822 2.3773
13 7 3.1846 5.4058 1.5790
14 6 1.9006 5.5281 1.1193
15 1 1.2692 4.6552 1.0422
16 6 1.4103 6.7738 0.7523
17 7 2.2317 7.7956 0.6345
18 14 -0.4148 7.0002 0.4255
19 1 -1.1829 6.6588 1.6498
20 1 -0.6796 8.4132 0.0535
21 1 -0.8331 6.1085 -0.6858
22 6 2.3111 3.4729 -0.5989
23 7 1.6797 2.3751 -0.9274
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3632 -1.0276 -0.0005
26 1 -0.3634 0.5138 0.8899
27 1 1.8934 -0.5138 -0.8900
28 1 1.8933 -0.5138 0.8900
29 1 3.3218 1.4117 1.7337
30 1 5.7419 3.6809 0.1760
31 1 4.7776 4.9822 -0.5682
32 1 5.4098 7.8800 2.2201
33 1 4.5746 7.5479 0.6807
34 1 4.1359 6.0772 3.3221
35 1 3.0183 7.2432 2.5742
36 1 1.8891 8.6662 0.3784
37 1 2.2550 4.4163 -1.1218
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000408360467.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:00:51
Heat of formation + Delta-G solvation = 73.315511 kcal
Electronic energy + Delta-G solvation = -21030.815495 eV
Core-core repulsion = 17937.821350 eV
Total energy + Delta-G solvation = -3092.994145 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 283.110 amu
Computer time = 1.81 seconds
Orbital eigenvalues (eV)
-40.65857 -36.73992 -34.79743 -34.07989 -32.27874 -30.84904 -29.80619 -28.45049
-27.84715 -24.16500 -23.59712 -22.53538 -20.79332 -20.14812 -19.12187 -17.21491
-16.53162 -15.98331 -15.18941 -15.01398 -14.42401 -14.14585 -13.96477 -13.83167
-13.47678 -13.38610 -13.03027 -12.80146 -12.44849 -12.14044 -11.97591 -11.73015
-11.46217 -11.20955 -11.08878 -10.98359 -10.78643 -10.71420 -10.43668 -10.07841
-9.98604 -9.63209 -8.95352 -8.75731 -8.47998 -7.75377 -7.36508 -6.68912
-5.85544 -3.38357 2.43090 2.54582 3.01438 3.35606 3.40115 3.41813
3.43901 3.58681 4.45150 4.61421 4.70530 5.03843 5.18057 5.23273
5.33005 5.39218 5.57785 5.63551 5.85778 5.92625 5.96144 6.13068
6.19015 6.24105 6.30038 6.41780 6.50780 6.62920 6.70484 7.02834
7.36253 7.40259 7.54317 7.59072 7.83336 8.36974 8.45908 9.16330
9.74934 10.27030 11.20231
Molecular weight = 283.11amu
Principal moments of inertia in cm(-1)
A = 0.013649 B = 0.008093 C = 0.005483
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2050.905877 B = 3458.994065 C = 5105.638547
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.139 3.861
3 N -0.390 5.390
4 C 0.039 3.961
5 C -0.194 4.194
6 C 0.269 3.731
7 H 0.053 0.947
8 C -0.433 4.433
9 S 1.184 4.816
10 O -0.890 6.890
11 C -0.423 4.423
12 C 0.195 3.805
13 N -0.590 5.590
14 C -0.249 4.249
15 H 0.071 0.929
16 C 0.010 3.990
17 N -0.899 5.899
18 Si 0.896 3.104
19 H -0.284 1.284
20 H -0.292 1.292
21 H -0.281 1.281
22 C 0.101 3.899
23 N -0.320 5.320
24 H 0.069 0.931
25 H 0.067 0.933
26 H 0.060 0.940
27 H 0.074 0.926
28 H 0.088 0.912
29 H 0.165 0.835
30 H 0.092 0.908
31 H 0.084 0.916
32 H 0.087 0.913
33 H 0.114 0.886
34 H 0.020 0.980
35 H 0.094 0.906
36 H 0.255 0.745
37 H 0.182 0.818
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.743 -12.779 5.716 14.107
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.017 3.983
3 N -0.174 5.174
4 C -0.106 4.106
5 C -0.206 4.206
6 C 0.160 3.840
7 H 0.071 0.929
8 C -0.574 4.574
9 S 1.388 4.612
10 O -0.885 6.885
11 C -0.565 4.565
12 C 0.068 3.932
13 N -0.313 5.313
14 C -0.379 4.379
15 H 0.089 0.911
16 C -0.190 4.190
17 N -0.542 5.542
18 Si 0.726 3.274
19 H -0.210 1.210
20 H -0.218 1.218
21 H -0.207 1.207
22 C -0.086 4.086
23 N -0.141 5.141
24 H 0.088 0.912
25 H 0.086 0.914
26 H 0.079 0.921
27 H 0.092 0.908
28 H 0.106 0.894
29 H 0.182 0.818
30 H 0.111 0.889
31 H 0.103 0.897
32 H 0.105 0.895
33 H 0.133 0.867
34 H 0.038 0.962
35 H 0.112 0.888
36 H 0.065 0.935
37 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges 1.874 -13.325 5.042 14.369
hybrid contribution -1.421 1.593 -1.704 2.731
sum 0.453 -11.732 3.338 12.206
Atomic orbital electron populations
1.22042 0.94430 1.02036 1.03722 1.21439 0.95614 0.78541 1.02704
1.48436 1.36828 1.09709 1.22409 1.22117 0.96994 0.94953 0.96553
1.19925 1.06803 0.93591 1.00308 1.18316 0.86956 0.86613 0.92153
0.92918 1.28067 1.08792 1.10757 1.09832 1.69334 0.84823 0.95171
1.11920 1.93006 1.46671 1.79650 1.69218 1.27861 1.09325 1.10332
1.08965 1.20249 0.93041 0.90903 0.88979 1.44176 1.12099 1.16128
1.58856 1.19135 0.87690 0.93577 1.37506 0.91116 1.25198 0.97588
0.97309 0.98864 1.69912 1.32946 1.00884 1.50485 0.86463 0.85708
0.76765 0.78444 1.20991 1.21768 1.20714 1.23850 0.93248 0.95939
0.95530 1.77290 1.25237 0.97234 1.14303 0.91232 0.91426 0.92085
0.90766 0.89390 0.81779 0.88910 0.89703 0.89476 0.86729 0.96183
0.88778 0.93516 0.80070
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 44.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.77 10.10 37.16 0.38 -1.39 16
2 C 0.14 1.52 7.23 -4.04 -0.03 1.49 16
3 N -0.39 -6.13 3.68 -61.36 -0.23 -6.36 16
4 C 0.04 0.59 11.34 -17.23 -0.20 0.40 16
5 C -0.19 -3.56 4.00 -105.05 -0.42 -3.98 16
6 C 0.27 4.87 3.16 -69.02 -0.22 4.65 16
7 H 0.05 0.80 8.11 -51.93 -0.42 0.37 16
8 C -0.43 -7.87 5.89 37.28 0.22 -7.66 16
9 S 1.18 20.79 13.71 -107.50 -1.47 19.31 16
10 O -0.89 -21.07 18.14 -35.23 -0.64 -21.71 16
11 C -0.42 -8.48 6.43 37.28 0.24 -8.24 16
12 C 0.20 3.98 5.35 -3.99 -0.02 3.96 16
13 N -0.59 -12.75 2.79 -166.89 -0.46 -13.22 16
14 C -0.25 -6.09 7.10 -15.06 -0.11 -6.20 16
15 H 0.07 1.79 5.87 -52.48 -0.31 1.49 16
16 C 0.01 0.25 4.97 -17.43 -0.09 0.16 16
17 N -0.90 -24.02 9.79 55.49 0.54 -23.48 16
18 Si 0.90 21.15 29.57 -169.99 -5.03 16.12 16
19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16
22 C 0.10 2.07 9.30 -17.37 -0.16 1.91 16
23 N -0.32 -6.22 12.42 30.62 0.38 -5.84 16
24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
28 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16
29 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16
30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16
31 H 0.08 1.84 8.12 -51.93 -0.42 1.42 16
32 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16
33 H 0.11 2.84 6.80 -51.93 -0.35 2.49 16
34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16
35 H 0.09 2.22 6.16 -51.93 -0.32 1.90 16
36 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16
37 H 0.18 4.08 7.47 -52.48 -0.39 3.69 16
LS Contribution 310.26 15.07 4.68 4.68
Total: -1.00 -34.01 310.26 -7.79 -41.80
By element:
Atomic # 1 Polarization: 8.75 SS G_CDS: -5.15 Total: 3.60 kcal
Atomic # 6 Polarization: -14.49 SS G_CDS: -0.41 Total: -14.90 kcal
Atomic # 7 Polarization: -49.14 SS G_CDS: 0.23 Total: -48.90 kcal
Atomic # 8 Polarization: -21.07 SS G_CDS: -0.64 Total: -21.71 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal
Atomic # 16 Polarization: 20.79 SS G_CDS: -1.47 Total: 19.31 kcal
Total LS contribution 4.68 Total: 4.68 kcal
Total: -34.01 -7.79 -41.80 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000408360467.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.118 kcal
(2) G-P(sol) polarization free energy of solvation -34.014 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.104 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.316 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.81 seconds