Wall clock time and date at job start Tue Mar 31 2020 02:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00008 * 2 1 4 4 H 1.48495 * 109.47550 * 89.99775 * 3 2 1 5 5 H 1.48511 * 109.47116 * 209.99923 * 3 2 1 6 6 H 1.48499 * 109.47060 * 329.99353 * 3 2 1 7 7 C 1.37883 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 5.23736 * 7 2 1 9 9 C 1.50704 * 119.99782 * 185.23007 * 7 2 1 10 10 O 1.42891 * 112.94610 * 52.32111 * 9 7 2 11 11 C 1.53945 * 113.73960 * 280.58000 * 9 7 2 12 12 N 1.47582 * 86.11797 * 222.05041 * 11 9 7 13 13 C 1.34776 * 134.49131 * 204.64457 * 12 11 9 14 14 O 1.21281 * 119.99710 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00331 * 359.97438 * 13 12 11 16 16 N 1.46494 * 109.47210 * 180.02562 * 15 13 12 17 17 C 1.46378 * 119.32993 * 90.00367 * 16 15 13 18 18 C 1.53249 * 109.15440 * 209.03703 * 17 16 15 19 19 C 1.53241 * 108.56197 * 304.51842 * 18 17 16 20 20 N 1.46380 * 109.15329 * 55.47988 * 19 18 17 21 21 C 1.34143 * 119.33098 * 269.72911 * 16 15 13 22 22 O 1.21582 * 118.69191 * 359.42850 * 21 16 15 23 23 C 1.47579 * 91.01427 * 24.64505 * 12 11 9 24 24 H 0.97008 * 119.99681 * 174.95530 * 1 2 3 25 25 H 0.96707 * 113.99791 * 304.09314 * 10 9 7 26 26 H 1.09003 * 113.77282 * 336.35677 * 11 9 7 27 27 H 1.09009 * 113.76274 * 107.75196 * 11 9 7 28 28 H 1.08998 * 109.46957 * 300.00592 * 15 13 12 29 29 H 1.09008 * 109.46933 * 60.00266 * 15 13 12 30 30 H 1.08999 * 109.52200 * 328.93656 * 17 16 15 31 31 H 1.08995 * 109.52794 * 89.07159 * 17 16 15 32 32 H 1.09000 * 109.62094 * 64.23956 * 18 17 16 33 33 H 1.09001 * 109.62065 * 184.60841 * 18 17 16 34 34 H 1.08993 * 109.52106 * 175.38121 * 19 18 17 35 35 H 1.09001 * 109.51953 * 295.57833 * 19 18 17 36 36 H 0.96993 * 119.33135 * 150.96388 * 20 19 18 37 37 H 1.08998 * 113.77112 * 221.06054 * 23 12 11 38 38 H 1.09000 * 113.87384 * 89.66748 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5468 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4680 -2.1275 -0.0844 9 6 3.5069 -1.1967 0.1195 10 8 3.9785 -0.4412 1.2369 11 6 4.2336 -0.8768 -1.1994 12 7 5.1662 -1.9598 -0.8316 13 6 6.4458 -2.2496 -1.1399 14 8 6.9722 -3.2389 -0.6760 15 6 7.2223 -1.3451 -2.0618 16 7 8.5770 -1.8739 -2.2379 17 6 8.8435 -2.8147 -3.3272 18 6 9.9939 -3.7419 -2.9207 19 6 11.2027 -2.8810 -2.5386 20 7 10.8082 -1.9366 -1.4921 21 6 9.5494 -1.4820 -1.4010 22 8 9.2779 -0.6866 -0.5225 23 6 4.1349 -2.5980 0.0092 24 1 -0.4850 -0.8369 -0.0739 25 1 3.6757 0.4772 1.2467 26 1 3.6421 -1.0897 -2.0898 27 1 4.6935 0.1113 -1.2190 28 1 6.7227 -1.2971 -3.0293 29 1 7.2753 -0.3455 -1.6303 30 1 7.9500 -3.4073 -3.5235 31 1 9.1194 -2.2629 -4.2258 32 1 9.6914 -4.3477 -2.0665 33 1 10.2533 -4.3916 -3.7566 34 1 12.0034 -3.5212 -2.1686 35 1 11.5494 -2.3312 -3.4136 36 1 11.4713 -1.6303 -0.8540 37 1 4.5159 -2.9842 0.9546 38 1 3.5135 -3.3171 -0.5245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527004075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:57 Heat of formation + Delta-G solvation = -84.936725 kcal Electronic energy + Delta-G solvation = -23062.424510 eV Core-core repulsion = 19519.815162 eV Total energy + Delta-G solvation = -3542.609348 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.93070 -41.15175 -39.21130 -37.51194 -36.19822 -35.84280 -34.64927 -32.15020 -31.07946 -28.98077 -27.26616 -26.75992 -26.09992 -23.96939 -21.94527 -20.46755 -19.99912 -19.82653 -18.64431 -18.30913 -18.26100 -17.75344 -17.00197 -16.76515 -16.45482 -15.80144 -15.59402 -15.33575 -15.11341 -14.73749 -14.71268 -14.59151 -14.24152 -13.96996 -13.81957 -13.34045 -13.07350 -12.72558 -12.54709 -12.36787 -12.26148 -12.10275 -11.68219 -11.35956 -11.26842 -11.16625 -10.96693 -10.46040 -10.17848 -9.72207 -9.62281 -8.80906 -6.59616 1.38585 1.45086 1.47237 1.56024 1.63622 1.93568 2.15390 2.40470 2.84410 2.87655 3.24065 3.53447 3.76397 3.81439 3.92601 3.98374 4.24672 4.32040 4.33634 4.40957 4.45857 4.58880 4.63936 4.65666 4.73103 4.78055 4.83482 4.92348 5.19254 5.29890 5.55043 5.57111 5.90657 6.06461 6.38678 6.70521 6.75034 6.77195 7.05247 7.25689 7.48787 8.53733 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.034058 B = 0.004283 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.918076 B = 6535.173472 C = 6809.719627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 1.062 2.938 4 H -0.264 1.264 5 H -0.224 1.224 6 H -0.280 1.280 7 C -0.613 4.613 8 H 0.039 0.961 9 C 0.183 3.817 10 O -0.566 6.566 11 C 0.074 3.926 12 N -0.635 5.635 13 C 0.509 3.491 14 O -0.589 6.589 15 C 0.124 3.876 16 N -0.608 5.608 17 C 0.106 3.894 18 C -0.151 4.151 19 C 0.108 3.892 20 N -0.732 5.732 21 C 0.701 3.299 22 O -0.651 6.651 23 C 0.123 3.877 24 H 0.259 0.741 25 H 0.362 0.638 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.149 0.851 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.417 0.583 37 H 0.056 0.944 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.980 -2.971 -13.215 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.883 3.117 4 H -0.190 1.190 5 H -0.148 1.148 6 H -0.206 1.206 7 C -0.651 4.651 8 H 0.057 0.943 9 C 0.142 3.858 10 O -0.377 6.377 11 C -0.048 4.048 12 N -0.369 5.369 13 C 0.299 3.701 14 O -0.470 6.470 15 C -0.004 4.004 16 N -0.343 5.343 17 C -0.016 4.016 18 C -0.189 4.189 19 C -0.015 4.015 20 N -0.389 5.389 21 C 0.402 3.598 22 O -0.534 6.534 23 C 0.000 4.000 24 H 0.068 0.932 25 H 0.213 0.787 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.166 0.834 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.255 0.745 37 H 0.075 0.925 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 21.309 -2.173 -12.551 24.825 hybrid contribution -0.759 -1.603 0.679 1.899 sum 20.550 -3.776 -11.872 24.031 Atomic orbital electron populations 1.70911 1.08008 1.30429 1.46601 1.27234 0.96313 1.06200 0.91253 0.83979 0.76478 0.72037 0.79196 1.18974 1.14777 1.20647 1.22371 0.91471 0.95011 1.56216 0.94274 1.20581 0.91683 0.89841 0.83702 1.86464 1.76216 1.26400 1.48624 1.24617 0.88340 0.91059 1.00756 1.50135 1.09716 1.28809 1.48264 1.21613 0.80464 0.86179 0.81846 1.90605 1.69344 1.30867 1.56158 1.21163 0.81682 0.96729 1.00820 1.46495 1.06676 1.48304 1.32826 1.21941 1.00072 0.90873 0.88665 1.22225 0.94734 0.98177 1.03756 1.21846 0.97534 0.91092 0.91043 1.44944 1.08355 1.49170 1.36389 1.15748 0.82258 0.80530 0.81256 1.90920 1.82371 1.41353 1.38718 1.23194 0.86378 0.96573 0.93880 0.93193 0.78656 0.86948 0.88654 0.83386 0.87610 0.90197 0.88139 0.93265 0.84762 0.87462 0.89128 0.74487 0.92501 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.84 13.70 21.45 0.29 -53.55 16 2 C -0.01 -0.50 5.47 84.66 0.46 -0.04 16 3 Si 1.06 43.12 24.79 68.60 1.70 44.82 16 4 H -0.26 -10.22 6.95 99.48 0.69 -9.53 16 5 H -0.22 -7.50 4.86 99.48 0.48 -7.01 16 6 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.61 -32.18 9.04 25.60 0.23 -31.95 16 8 H 0.04 2.24 8.04 -2.91 -0.02 2.22 16 9 C 0.18 8.34 1.06 -10.88 -0.01 8.33 16 10 O -0.57 -26.85 13.42 -148.98 -2.00 -28.85 16 11 C 0.07 2.75 6.78 86.48 0.59 3.33 16 12 N -0.63 -25.10 3.61 -840.24 -3.03 -28.13 16 13 C 0.51 19.65 8.12 87.66 0.71 20.36 16 14 O -0.59 -26.84 17.16 -3.03 -0.05 -26.89 16 15 C 0.12 3.56 5.55 85.63 0.48 4.03 16 16 N -0.61 -16.25 2.30 -845.67 -1.95 -18.20 16 17 C 0.11 1.75 6.49 86.49 0.56 2.31 16 18 C -0.15 -1.97 6.20 30.76 0.19 -1.78 16 19 C 0.11 1.19 7.20 86.48 0.62 1.81 16 20 N -0.73 -15.44 5.58 -479.85 -2.68 -18.11 16 21 C 0.70 21.90 8.18 179.45 1.47 23.37 16 22 O -0.65 -27.00 16.48 -3.98 -0.07 -27.07 16 23 C 0.12 5.33 8.23 86.48 0.71 6.04 16 24 H 0.26 15.28 8.72 -92.70 -0.81 14.47 16 25 H 0.36 15.47 4.23 -74.05 -0.31 15.15 16 26 H 0.11 3.76 8.09 -2.39 -0.02 3.74 16 27 H 0.10 3.14 6.54 -2.38 -0.02 3.13 16 28 H 0.15 2.89 8.05 -2.39 -0.02 2.87 16 29 H 0.11 3.30 7.29 -2.38 -0.02 3.28 16 30 H 0.08 1.36 8.06 -2.39 -0.02 1.34 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.59 8.14 -2.39 -0.02 0.58 16 36 H 0.42 7.88 8.88 -92.71 -0.82 7.05 16 37 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.10 4.05 8.09 -2.39 -0.02 4.03 16 Total: -1.00 -81.59 313.13 -2.08 -83.67 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: -0.31 Total: 36.50 kcal Atomic # 6 Polarization: 29.80 SS G_CDS: 6.01 Total: 35.81 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -7.36 Total: -117.99 kcal Atomic # 8 Polarization: -80.69 SS G_CDS: -2.12 Total: -82.81 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.70 Total: 44.82 kcal Total: -81.59 -2.08 -83.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527004075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.263 kcal (2) G-P(sol) polarization free energy of solvation -81.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds