Wall clock time and date at job start Tue Mar 31 2020 02:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48501 * 109.46799 * 264.77221 * 3 2 1 5 5 H 1.48500 * 109.47179 * 24.76817 * 3 2 1 6 6 H 1.48500 * 109.46981 * 144.76931 * 3 2 1 7 7 C 1.37878 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00129 * 6.04720 * 7 2 1 9 9 C 1.50705 * 119.99554 * 186.05249 * 7 2 1 10 10 O 1.42897 * 110.35583 * 61.57944 * 9 7 2 11 11 C 1.54595 * 110.30508 * 183.71683 * 9 7 2 12 12 C 1.54944 * 102.92089 * 140.87199 * 11 9 7 13 13 N 1.48534 * 103.22563 * 322.58570 * 12 11 9 14 14 C 1.46895 * 111.00190 * 159.72163 * 13 12 11 15 15 C 1.53002 * 109.47372 * 52.60128 * 14 13 12 16 16 H 1.08999 * 109.46551 * 60.00018 * 15 14 13 17 17 O 1.42906 * 109.47006 * 300.00597 * 15 14 13 18 18 C 1.52991 * 109.47369 * 180.02562 * 15 14 13 19 19 C 1.52998 * 109.47132 * 185.00187 * 18 15 14 20 20 F 1.39902 * 109.47286 * 59.99680 * 19 18 15 21 21 F 1.39903 * 109.47375 * 180.02562 * 19 18 15 22 22 F 1.39898 * 109.47365 * 299.99836 * 19 18 15 23 23 C 1.47903 * 105.82174 * 39.20610 * 13 12 11 24 24 H 0.97007 * 120.00154 * 359.97438 * 1 2 3 25 25 H 0.96699 * 114.00212 * 57.85069 * 10 9 7 26 26 H 1.08996 * 110.72471 * 259.22820 * 11 9 7 27 27 H 1.09003 * 110.72615 * 22.33500 * 11 9 7 28 28 H 1.09000 * 110.66844 * 204.15261 * 12 11 9 29 29 H 1.08996 * 110.66632 * 81.01605 * 12 11 9 30 30 H 1.09003 * 109.46549 * 292.60601 * 14 13 12 31 31 H 1.08992 * 109.47367 * 172.60389 * 14 13 12 32 32 H 0.96703 * 113.99833 * 299.99587 * 17 15 14 33 33 H 1.08996 * 109.47119 * 304.99870 * 18 15 14 34 34 H 1.09005 * 109.47472 * 65.00309 * 18 15 14 35 35 H 1.08997 * 109.91465 * 94.02034 * 23 13 12 36 36 H 1.09003 * 109.91746 * 215.12130 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6071 1.9826 -1.3943 5 1 1.3957 2.6821 0.5866 6 1 3.4870 1.4745 0.8077 7 6 2.0044 -1.1941 0.0005 8 1 1.4689 -2.1268 -0.0976 9 6 3.5052 -1.1976 0.1382 10 8 3.8910 -0.6236 1.3886 11 6 4.0515 -2.6388 0.0181 12 6 5.3514 -2.4493 -0.8036 13 7 4.9869 -1.3872 -1.7759 14 6 6.1866 -0.7335 -2.3159 15 6 7.1429 -1.7949 -2.8635 16 1 6.6474 -2.3563 -3.6555 17 8 7.5186 -2.6859 -1.8113 18 6 8.3926 -1.1142 -3.4253 19 6 9.2917 -2.1622 -4.0841 20 9 8.5944 -2.7879 -5.1232 21 9 10.4347 -1.5399 -4.5974 22 9 9.6683 -3.1174 -3.1339 23 6 4.1505 -0.4245 -1.0268 24 1 -0.4851 0.8401 0.0004 25 1 3.5141 -1.0699 2.1592 26 1 4.2741 -3.0502 1.0025 27 1 3.3451 -3.2761 -0.5140 28 1 5.6167 -3.3707 -1.3219 29 1 6.1678 -2.1191 -0.1613 30 1 6.6820 -0.1721 -1.5237 31 1 5.9000 -0.0540 -3.1183 32 1 7.9658 -2.2537 -1.0708 33 1 8.0992 -0.3700 -4.1657 34 1 8.9359 -0.6267 -2.6157 35 1 4.7713 0.3827 -0.6380 36 1 3.3781 -0.0174 -1.6793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:44 Heat of formation + Delta-G solvation = -238.977753 kcal Electronic energy + Delta-G solvation = -23712.281941 eV Core-core repulsion = 19588.843381 eV Total energy + Delta-G solvation = -4123.438560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.118 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.23488 -47.77798 -47.65814 -39.36714 -37.44927 -34.66831 -32.66513 -32.34639 -30.44825 -28.32880 -27.06333 -24.31903 -23.21455 -22.02702 -20.84073 -19.57136 -18.70459 -18.54915 -17.84325 -17.07387 -16.36784 -16.08625 -15.26590 -15.13646 -14.70494 -14.64967 -14.47047 -14.22858 -14.13231 -13.86095 -13.82540 -13.64390 -13.02544 -12.84752 -12.64220 -12.48230 -12.19153 -11.90088 -11.88353 -11.47354 -11.30835 -10.95739 -10.66762 -10.55431 -10.20478 -9.97425 -9.66369 -9.00053 -8.67630 -8.36214 -7.94787 -6.16770 -4.25086 2.56085 3.28135 3.38967 3.53804 3.57775 3.69128 3.80354 4.24294 4.33021 4.43689 4.70720 4.76103 4.87696 5.06477 5.13624 5.20777 5.34846 5.57786 5.78117 5.80451 5.91339 6.01748 6.12602 6.34139 6.58956 6.73989 6.93598 7.11221 7.37361 7.42741 7.53455 7.60954 8.26690 8.82251 8.98064 9.47716 10.94327 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.034256 B = 0.004267 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.178856 B = 6560.543785 C = 6837.057036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.085 3.915 3 Si 0.870 3.130 4 H -0.284 1.284 5 H -0.298 1.298 6 H -0.232 1.232 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.211 3.789 10 O -0.583 6.583 11 C -0.141 4.141 12 C 0.050 3.950 13 N -0.507 5.507 14 C 0.016 3.984 15 C 0.108 3.892 16 H 0.120 0.880 17 O -0.543 6.543 18 C -0.202 4.202 19 C 0.457 3.543 20 F -0.183 7.183 21 F -0.190 7.190 22 F -0.173 7.173 23 C 0.044 3.956 24 H 0.265 0.735 25 H 0.365 0.635 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.373 0.627 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.034 0.966 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.531 -1.681 -5.750 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.119 4.119 3 Si 0.698 3.302 4 H -0.211 1.211 5 H -0.225 1.225 6 H -0.155 1.155 7 C -0.582 4.582 8 H 0.095 0.905 9 C 0.172 3.828 10 O -0.389 6.389 11 C -0.180 4.180 12 C -0.077 4.077 13 N -0.232 5.232 14 C -0.113 4.113 15 C 0.048 3.952 16 H 0.138 0.862 17 O -0.349 6.349 18 C -0.241 4.241 19 C 0.403 3.597 20 F -0.165 7.165 21 F -0.172 7.172 22 F -0.155 7.155 23 C -0.083 4.083 24 H 0.075 0.925 25 H 0.212 0.788 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.221 0.779 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.052 0.948 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 18.173 -1.847 -6.998 19.561 hybrid contribution 0.828 1.350 1.066 1.909 sum 19.001 -0.497 -5.932 19.912 Atomic orbital electron populations 1.69942 1.06603 1.27387 1.48753 1.24999 0.94569 0.99526 0.92847 0.87114 0.81965 0.82640 0.78496 1.21068 1.22521 1.15501 1.21387 0.89200 0.94970 1.52623 0.90497 1.19822 0.93975 0.87789 0.81245 1.86445 1.75409 1.60761 1.16330 1.23156 0.96500 0.99379 0.98935 1.23301 0.95911 0.95613 0.92905 1.64859 1.14231 1.10843 1.33253 1.22898 0.92256 0.95893 1.00226 1.21930 0.90573 0.91571 0.91093 0.86210 1.86814 1.79580 1.37115 1.31350 1.23670 0.98388 0.97838 1.04213 1.20390 0.79605 0.82680 0.77054 1.93190 1.78775 1.84236 1.60249 1.93181 1.53535 1.82463 1.88016 1.93228 1.91924 1.66434 1.63870 1.23290 0.96104 0.93719 0.95208 0.92516 0.78848 0.92284 0.90680 0.89406 0.94725 0.94450 0.89779 0.77922 0.86259 0.87055 0.94765 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 2 C 0.08 2.40 5.39 -17.82 -0.10 2.30 16 3 Si 0.87 21.49 23.85 -169.99 -4.05 17.43 16 4 H -0.28 -6.83 6.94 56.52 0.39 -6.44 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.23 -5.62 5.42 56.52 0.31 -5.31 16 7 C -0.54 -14.88 8.67 -34.44 -0.30 -15.17 16 8 H 0.08 2.29 7.82 -52.49 -0.41 1.88 16 9 C 0.21 4.82 0.84 -90.41 -0.08 4.74 16 10 O -0.58 -12.92 10.44 -35.23 -0.37 -13.28 16 11 C -0.14 -2.77 6.34 -24.87 -0.16 -2.93 16 12 C 0.05 0.84 4.65 -1.89 -0.01 0.83 16 13 N -0.51 -9.04 5.40 -230.45 -1.24 -10.28 16 14 C 0.02 0.22 4.88 -3.83 -0.02 0.20 16 15 C 0.11 1.15 2.99 -26.73 -0.08 1.07 16 16 H 0.12 1.42 7.66 -51.93 -0.40 1.02 16 17 O -0.54 -6.13 8.07 -35.23 -0.28 -6.41 16 18 C -0.20 -1.58 5.01 -26.74 -0.13 -1.71 16 19 C 0.46 4.47 3.16 37.16 0.12 4.59 16 20 F -0.18 -2.05 16.71 2.25 0.04 -2.01 16 21 F -0.19 -1.91 17.32 2.25 0.04 -1.87 16 22 F -0.17 -1.94 15.75 2.25 0.04 -1.91 16 23 C 0.04 0.94 4.11 -2.75 -0.01 0.93 16 24 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.36 7.10 9.07 45.56 0.41 7.51 16 26 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 27 H 0.07 1.56 7.70 -51.93 -0.40 1.16 16 28 H 0.09 1.43 6.83 -51.93 -0.35 1.07 16 29 H 0.03 0.54 6.81 -51.93 -0.35 0.19 16 30 H 0.04 0.47 7.81 -51.93 -0.41 0.07 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.37 3.20 8.34 45.56 0.38 3.58 16 33 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.73 6.53 -51.93 -0.34 0.39 16 36 H 0.09 2.11 5.80 -51.93 -0.30 1.81 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -31.68 292.19 -4.52 -36.20 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -3.10 Total: 8.88 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.76 Total: -5.15 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.47 Total: -36.28 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.65 Total: -19.70 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.05 Total: 17.43 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.68 -4.52 -36.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.774 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds