Wall clock time and date at job start Tue Mar 31 2020 02:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48501 * 109.46799 * 264.77221 * 3 2 1 5 5 H 1.48500 * 109.47179 * 24.76817 * 3 2 1 6 6 H 1.48500 * 109.46981 * 144.76931 * 3 2 1 7 7 C 1.37878 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00129 * 6.04720 * 7 2 1 9 9 C 1.50705 * 119.99554 * 186.05249 * 7 2 1 10 10 O 1.42897 * 110.35583 * 61.57944 * 9 7 2 11 11 C 1.54595 * 110.30508 * 183.71683 * 9 7 2 12 12 C 1.54944 * 102.92089 * 140.87199 * 11 9 7 13 13 N 1.48534 * 103.22563 * 322.58570 * 12 11 9 14 14 C 1.46895 * 111.00190 * 159.72163 * 13 12 11 15 15 C 1.53002 * 109.47372 * 52.60128 * 14 13 12 16 16 H 1.08999 * 109.46551 * 60.00018 * 15 14 13 17 17 O 1.42906 * 109.47006 * 300.00597 * 15 14 13 18 18 C 1.52991 * 109.47369 * 180.02562 * 15 14 13 19 19 C 1.52998 * 109.47132 * 185.00187 * 18 15 14 20 20 F 1.39902 * 109.47286 * 59.99680 * 19 18 15 21 21 F 1.39903 * 109.47375 * 180.02562 * 19 18 15 22 22 F 1.39898 * 109.47365 * 299.99836 * 19 18 15 23 23 C 1.47903 * 105.82174 * 39.20610 * 13 12 11 24 24 H 0.97007 * 120.00154 * 359.97438 * 1 2 3 25 25 H 0.96699 * 114.00212 * 57.85069 * 10 9 7 26 26 H 1.08996 * 110.72471 * 259.22820 * 11 9 7 27 27 H 1.09003 * 110.72615 * 22.33500 * 11 9 7 28 28 H 1.09000 * 110.66844 * 204.15261 * 12 11 9 29 29 H 1.08996 * 110.66632 * 81.01605 * 12 11 9 30 30 H 1.09003 * 109.46549 * 292.60601 * 14 13 12 31 31 H 1.08992 * 109.47367 * 172.60389 * 14 13 12 32 32 H 0.96703 * 113.99833 * 299.99587 * 17 15 14 33 33 H 1.08996 * 109.47119 * 304.99870 * 18 15 14 34 34 H 1.09005 * 109.47472 * 65.00309 * 18 15 14 35 35 H 1.08997 * 109.91465 * 94.02034 * 23 13 12 36 36 H 1.09003 * 109.91746 * 215.12130 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6071 1.9826 -1.3943 5 1 1.3957 2.6821 0.5866 6 1 3.4870 1.4745 0.8077 7 6 2.0044 -1.1941 0.0005 8 1 1.4689 -2.1268 -0.0976 9 6 3.5052 -1.1976 0.1382 10 8 3.8910 -0.6236 1.3886 11 6 4.0515 -2.6388 0.0181 12 6 5.3514 -2.4493 -0.8036 13 7 4.9869 -1.3872 -1.7759 14 6 6.1866 -0.7335 -2.3159 15 6 7.1429 -1.7949 -2.8635 16 1 6.6474 -2.3563 -3.6555 17 8 7.5186 -2.6859 -1.8113 18 6 8.3926 -1.1142 -3.4253 19 6 9.2917 -2.1622 -4.0841 20 9 8.5944 -2.7879 -5.1232 21 9 10.4347 -1.5399 -4.5974 22 9 9.6683 -3.1174 -3.1339 23 6 4.1505 -0.4245 -1.0268 24 1 -0.4851 0.8401 0.0004 25 1 3.5141 -1.0699 2.1592 26 1 4.2741 -3.0502 1.0025 27 1 3.3451 -3.2761 -0.5140 28 1 5.6167 -3.3707 -1.3219 29 1 6.1678 -2.1191 -0.1613 30 1 6.6820 -0.1721 -1.5237 31 1 5.9000 -0.0540 -3.1183 32 1 7.9658 -2.2537 -1.0708 33 1 8.0992 -0.3700 -4.1657 34 1 8.9359 -0.6267 -2.6157 35 1 4.7713 0.3827 -0.6380 36 1 3.3781 -0.0174 -1.6793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:43 Heat of formation + Delta-G solvation = -266.596594 kcal Electronic energy + Delta-G solvation = -23713.479584 eV Core-core repulsion = 19588.843381 eV Total energy + Delta-G solvation = -4124.636202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.00369 -48.54895 -48.44978 -40.66570 -38.67668 -36.15734 -34.48107 -33.49316 -31.77808 -30.00892 -28.31810 -25.98679 -24.31476 -22.91899 -22.17961 -21.31624 -19.46784 -19.32487 -19.09850 -18.65357 -17.36782 -17.10884 -16.95823 -16.40653 -16.10960 -15.73859 -15.44363 -15.34119 -15.08840 -14.92058 -14.66532 -14.64896 -14.59565 -14.39558 -14.03514 -13.71164 -13.48283 -13.30933 -13.02571 -12.81232 -12.51181 -12.44108 -12.20168 -12.00096 -11.88159 -11.77386 -10.97453 -10.84776 -10.67758 -10.17510 -9.29483 -8.35672 -6.47545 1.32864 1.39582 1.60800 1.84557 2.37146 2.73311 2.93306 2.99724 3.13082 3.25784 3.48647 3.67260 3.83790 3.94442 4.02349 4.22216 4.31693 4.34839 4.44297 4.50601 4.58707 4.71391 4.86369 4.94660 5.01433 5.28644 5.36533 5.41291 5.61489 5.96002 6.11031 6.21204 6.63445 6.76250 7.17570 7.33890 8.79327 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.034256 B = 0.004267 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.178856 B = 6560.543785 C = 6837.057036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.032 3.968 3 Si 0.935 3.065 4 H -0.273 1.273 5 H -0.303 1.303 6 H -0.218 1.218 7 C -0.548 4.548 8 H 0.034 0.966 9 C 0.208 3.792 10 O -0.583 6.583 11 C -0.142 4.142 12 C 0.065 3.935 13 N -0.524 5.524 14 C 0.014 3.986 15 C 0.117 3.883 16 H 0.105 0.895 17 O -0.557 6.557 18 C -0.189 4.189 19 C 0.454 3.546 20 F -0.195 7.195 21 F -0.192 7.192 22 F -0.183 7.183 23 C 0.051 3.949 24 H 0.266 0.734 25 H 0.375 0.625 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.386 0.614 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.042 0.958 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.518 -0.624 -5.799 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.168 4.168 3 Si 0.760 3.240 4 H -0.199 1.199 5 H -0.231 1.231 6 H -0.140 1.140 7 C -0.585 4.585 8 H 0.052 0.948 9 C 0.167 3.833 10 O -0.391 6.391 11 C -0.181 4.181 12 C -0.061 4.061 13 N -0.249 5.249 14 C -0.114 4.114 15 C 0.057 3.943 16 H 0.123 0.877 17 O -0.365 6.365 18 C -0.227 4.227 19 C 0.400 3.600 20 F -0.176 7.176 21 F -0.173 7.173 22 F -0.165 7.165 23 C -0.077 4.077 24 H 0.075 0.925 25 H 0.224 0.776 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.236 0.764 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.060 0.940 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.190 -0.807 -7.043 22.344 hybrid contribution -0.126 0.898 1.086 1.415 sum 21.064 0.091 -5.956 21.890 Atomic orbital electron populations 1.70083 1.08467 1.28291 1.51066 1.25822 0.95154 1.03197 0.92596 0.86104 0.80815 0.77985 0.79084 1.19927 1.23104 1.14039 1.21700 0.92105 0.93194 1.51532 0.94817 1.19770 0.91153 0.90280 0.82051 1.86387 1.75098 1.61128 1.16442 1.23116 0.97600 0.97045 1.00319 1.23235 0.94543 0.95797 0.92568 1.64754 1.16671 1.10604 1.32830 1.23035 0.90917 0.96681 1.00810 1.21728 0.91249 0.90728 0.90585 0.87703 1.86779 1.79825 1.37819 1.32083 1.23607 0.96692 0.97128 1.05320 1.20694 0.79776 0.82782 0.76713 1.93171 1.78992 1.84585 1.60873 1.93179 1.53709 1.82378 1.88055 1.93210 1.92066 1.67027 1.64147 1.22977 0.96149 0.94421 0.94190 0.92483 0.77636 0.90609 0.92990 0.88610 0.92516 0.92850 0.88824 0.76378 0.84234 0.84520 0.93995 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.34 13.96 21.45 0.30 -58.05 16 2 C 0.03 1.82 5.39 84.66 0.46 2.28 16 3 Si 0.94 44.42 23.85 68.60 1.64 46.05 16 4 H -0.27 -12.41 6.94 99.48 0.69 -11.72 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.22 -9.79 5.42 99.48 0.54 -9.25 16 7 C -0.55 -30.67 8.67 25.60 0.22 -30.45 16 8 H 0.03 2.12 7.82 -2.91 -0.02 2.09 16 9 C 0.21 9.26 0.84 -10.66 -0.01 9.25 16 10 O -0.58 -24.53 10.44 -148.98 -1.56 -26.09 16 11 C -0.14 -5.44 6.34 31.80 0.20 -5.24 16 12 C 0.07 2.02 4.65 86.65 0.40 2.42 16 13 N -0.52 -17.41 5.40 -883.01 -4.76 -22.18 16 14 C 0.01 0.31 4.88 86.30 0.42 0.74 16 15 C 0.12 2.10 2.99 30.59 0.09 2.19 16 16 H 0.11 2.24 7.66 -2.39 -0.02 2.22 16 17 O -0.56 -10.64 8.07 -148.98 -1.20 -11.85 16 18 C -0.19 -2.21 5.01 30.59 0.15 -2.05 16 19 C 0.45 7.68 3.16 71.98 0.23 7.91 16 20 F -0.19 -4.00 16.71 44.97 0.75 -3.25 16 21 F -0.19 -3.35 17.32 44.97 0.78 -2.57 16 22 F -0.18 -3.67 15.75 44.97 0.71 -2.96 16 23 C 0.05 2.07 4.11 86.45 0.36 2.43 16 24 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 25 H 0.38 13.96 9.07 -74.06 -0.67 13.29 16 26 H 0.08 2.59 8.08 -2.39 -0.02 2.57 16 27 H 0.05 2.19 7.70 -2.39 -0.02 2.18 16 28 H 0.10 2.86 6.83 -2.39 -0.02 2.85 16 29 H 0.06 1.52 6.81 -2.39 -0.02 1.51 16 30 H 0.05 1.08 7.81 -2.39 -0.02 1.06 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.39 4.97 8.34 -74.06 -0.62 4.35 16 33 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.14 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.04 1.64 6.53 -2.39 -0.02 1.62 16 36 H 0.06 2.83 5.80 -2.39 -0.01 2.81 16 Total: -1.00 -69.76 292.19 -1.17 -70.93 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.34 Total: 20.49 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 2.52 Total: -10.53 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -4.47 Total: -80.22 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -2.76 Total: -37.94 kcal Atomic # 9 Polarization: -11.02 SS G_CDS: 2.24 Total: -8.78 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.64 Total: 46.05 kcal Total: -69.76 -1.17 -70.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.668 kcal (2) G-P(sol) polarization free energy of solvation -69.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds