Wall clock time and date at job start Tue Mar 31 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47204 * 2 1 4 4 C 1.52999 * 109.47055 * 120.00233 * 2 1 3 5 5 N 1.46903 * 109.47224 * 170.79337 * 4 2 1 6 6 C 1.48536 * 110.99732 * 70.37160 * 5 4 2 7 7 C 1.54937 * 103.22795 * 159.72137 * 6 5 4 8 8 C 1.54595 * 102.92177 * 322.58632 * 7 6 5 9 9 O 1.42899 * 110.39390 * 262.99689 * 8 7 6 10 10 C 1.50703 * 110.31066 * 140.87006 * 8 7 6 11 11 H 1.07993 * 120.00209 * 239.08001 * 10 8 7 12 12 C 1.37876 * 119.99807 * 59.08486 * 10 8 7 13 13 N 1.31521 * 119.99784 * 0.90113 * 12 10 8 14 14 Si 1.86797 * 120.00055 * 180.90371 * 12 10 8 15 15 H 1.48494 * 109.47561 * 94.97861 * 14 12 10 16 16 H 1.48498 * 109.46867 * 214.98213 * 14 12 10 17 17 H 1.48499 * 109.46878 * 334.97731 * 14 12 10 18 18 C 1.47903 * 111.00371 * 187.76642 * 5 4 2 19 19 C 1.53000 * 109.46962 * 240.00044 * 2 1 3 20 20 F 1.39902 * 109.47190 * 299.99713 * 19 2 1 21 21 F 1.39894 * 109.47254 * 60.00389 * 19 2 1 22 22 F 1.39903 * 109.47186 * 180.02562 * 19 2 1 23 23 H 1.08999 * 109.47239 * 295.42525 * 1 2 3 24 24 H 1.09002 * 109.47446 * 55.42745 * 1 2 3 25 25 H 1.09003 * 109.47523 * 175.43359 * 1 2 3 26 26 H 0.96704 * 113.99868 * 202.77600 * 3 2 1 27 27 H 1.09000 * 109.47025 * 290.79077 * 4 2 1 28 28 H 1.09000 * 109.47295 * 50.79280 * 4 2 1 29 29 H 1.09000 * 110.66683 * 278.15414 * 6 5 4 30 30 H 1.08997 * 110.67181 * 41.28393 * 6 5 4 31 31 H 1.08994 * 110.72927 * 204.22748 * 7 6 5 32 32 H 1.09007 * 110.87710 * 81.01031 * 7 6 5 33 33 H 0.96701 * 114.00086 * 295.77014 * 9 8 7 34 34 H 0.97001 * 119.99510 * 180.02562 * 13 12 10 35 35 H 1.09004 * 109.91059 * 333.50888 * 18 5 4 36 36 H 1.08995 * 109.91687 * 94.60064 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.4921 -0.9162 1.1436 6 6 4.2134 0.3757 1.2745 7 6 5.6484 -0.0576 1.6664 8 6 5.4021 -1.2635 2.6019 9 8 5.4456 -0.8500 3.9691 10 6 6.4263 -2.3396 2.3489 11 1 6.1090 -3.3269 2.0474 12 6 7.7684 -2.0637 2.5026 13 7 8.1538 -0.8665 2.8871 14 14 9.0393 -3.3904 2.1646 15 1 9.5341 -3.2583 0.7708 16 1 10.1750 -3.2400 3.1094 17 1 8.4190 -4.7275 2.3451 18 6 3.9935 -1.7709 2.2416 19 6 2.0399 -0.7212 -1.2493 20 9 1.5736 -2.0403 -1.2492 21 9 1.5737 -0.0617 -2.3915 22 9 3.4389 -0.7218 -1.2490 23 1 -0.3634 0.4412 0.9281 24 1 -0.3634 0.5831 -0.8462 25 1 -0.3634 -1.0244 -0.0818 26 1 2.9053 1.4465 -0.3420 27 1 1.8171 -0.1214 2.1315 28 1 1.5486 -1.6905 1.3352 29 1 4.2191 0.9110 0.3250 30 1 3.7683 0.9871 2.0594 31 1 6.1619 0.7439 2.1973 32 1 6.2163 -0.3615 0.7869 33 1 6.3092 -0.5203 4.2530 34 1 9.0981 -0.6724 2.9948 35 1 3.3360 -1.6873 3.1070 36 1 4.0425 -2.8086 1.9116 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:50 Heat of formation + Delta-G solvation = -235.663580 kcal Electronic energy + Delta-G solvation = -24759.654997 eV Core-core repulsion = 20636.360150 eV Total energy + Delta-G solvation = -4123.294846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.87132 -47.42692 -47.22942 -39.17454 -37.32752 -34.57683 -32.48647 -32.13689 -29.52567 -28.12490 -26.35325 -25.44653 -23.84962 -21.13367 -20.51961 -19.45028 -18.94789 -18.18231 -18.09024 -17.09089 -15.84222 -15.31228 -14.91417 -14.55406 -14.27555 -14.22470 -13.95446 -13.85806 -13.73767 -13.62060 -13.42584 -13.31058 -13.21523 -12.87042 -12.52283 -12.24396 -12.10910 -11.75025 -11.59190 -11.27437 -11.01856 -10.86299 -10.63519 -10.46275 -10.38801 -10.13570 -9.87264 -9.14451 -8.60127 -8.14327 -7.93363 -6.19824 -4.26547 2.80776 3.24107 3.31562 3.35714 3.69516 3.84008 4.11048 4.22624 4.33301 4.53114 4.89670 4.96495 5.07830 5.37597 5.42946 5.52959 5.60173 5.75631 5.83907 5.97663 6.04901 6.18265 6.33969 6.39012 6.90291 6.97785 7.21089 7.26220 7.47551 7.57610 7.61478 7.81681 8.14827 8.75712 9.38320 9.46734 10.87290 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.027574 B = 0.005543 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.206566 B = 5049.809520 C = 5392.395896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.105 3.895 3 O -0.539 6.539 4 C 0.019 3.981 5 N -0.514 5.514 6 C 0.030 3.970 7 C -0.113 4.113 8 C 0.243 3.757 9 O -0.595 6.595 10 C -0.528 4.528 11 H 0.062 0.938 12 C 0.068 3.932 13 N -0.898 5.898 14 Si 0.899 3.101 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.058 3.942 19 C 0.429 3.571 20 F -0.180 7.180 21 F -0.191 7.191 22 F -0.153 7.153 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.386 0.614 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.381 0.619 34 H 0.266 0.734 35 H 0.037 0.963 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.365 2.924 -5.949 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.062 3.938 3 O -0.350 6.350 4 C -0.111 4.111 5 N -0.238 5.238 6 C -0.097 4.097 7 C -0.152 4.152 8 C 0.203 3.797 9 O -0.404 6.404 10 C -0.566 4.566 11 H 0.080 0.920 12 C -0.134 4.134 13 N -0.538 5.538 14 Si 0.727 3.273 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.069 4.069 19 C 0.374 3.626 20 F -0.162 7.162 21 F -0.172 7.172 22 F -0.134 7.134 23 H 0.102 0.898 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.240 0.760 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.293 2.687 -6.216 14.919 hybrid contribution 1.868 -0.349 0.074 1.902 sum -11.425 2.338 -6.142 13.181 Atomic orbital electron populations 1.21879 0.89916 1.03884 1.04842 1.22454 0.96847 0.83639 0.90889 1.86630 1.37346 1.23639 1.87392 1.22931 0.92193 1.00623 0.95342 1.65002 1.01123 1.12594 1.45103 1.23476 0.97235 0.90546 0.98453 1.22933 0.92053 0.99358 1.00843 1.19341 0.90004 0.90884 0.79448 1.86100 1.38667 1.86144 1.29457 1.21671 0.91021 0.97675 1.46279 0.92011 1.25014 0.98612 0.95664 0.94082 1.69737 1.16624 1.20070 1.47323 0.86456 0.80745 0.81997 0.78080 1.20596 1.21154 1.19779 1.22818 0.96522 0.97200 0.90361 1.21268 0.77299 0.78158 0.85838 1.93147 1.88558 1.37727 1.96718 1.93155 1.88723 1.80867 1.54493 1.93309 1.27667 1.96007 1.96421 0.89750 0.90525 0.89893 0.75970 0.91902 0.89164 0.92158 0.94018 0.91488 0.91245 0.76853 0.92439 0.94437 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.59 37.15 0.32 -1.18 16 2 C 0.11 1.38 0.78 -90.62 -0.07 1.31 16 3 O -0.54 -7.33 12.17 -35.23 -0.43 -7.76 16 4 C 0.02 0.27 3.85 -3.82 -0.01 0.26 16 5 N -0.51 -9.41 3.22 -230.45 -0.74 -10.15 16 6 C 0.03 0.56 4.76 -1.90 -0.01 0.55 16 7 C -0.11 -2.57 5.22 -24.87 -0.13 -2.70 16 8 C 0.24 5.93 0.99 -90.41 -0.09 5.84 16 9 O -0.59 -15.16 12.94 -35.23 -0.46 -15.62 16 10 C -0.53 -14.08 8.12 -34.44 -0.28 -14.36 16 11 H 0.06 1.66 7.36 -52.49 -0.39 1.27 16 12 C 0.07 1.79 5.23 -17.82 -0.09 1.70 16 13 N -0.90 -23.78 10.86 55.43 0.60 -23.17 16 14 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.06 1.23 6.14 -2.75 -0.02 1.21 16 19 C 0.43 6.21 2.25 37.16 0.08 6.29 16 20 F -0.18 -2.65 16.37 2.25 0.04 -2.61 16 21 F -0.19 -2.66 16.82 2.25 0.04 -2.62 16 22 F -0.15 -2.58 13.46 2.25 0.03 -2.55 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 25 H 0.08 0.74 7.68 -51.93 -0.40 0.34 16 26 H 0.39 4.99 5.40 45.56 0.25 5.23 16 27 H 0.06 0.94 7.88 -51.93 -0.41 0.53 16 28 H 0.09 1.23 8.00 -51.93 -0.42 0.82 16 29 H 0.06 0.99 4.93 -51.93 -0.26 0.73 16 30 H 0.04 0.78 7.84 -51.93 -0.41 0.37 16 31 H 0.07 1.58 7.93 -51.93 -0.41 1.17 16 32 H 0.07 1.70 7.85 -51.92 -0.41 1.30 16 33 H 0.38 9.87 7.44 45.56 0.34 10.21 16 34 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 35 H 0.04 0.78 7.59 -51.93 -0.39 0.38 16 36 H 0.08 1.74 7.40 -51.93 -0.38 1.36 16 LS Contribution 294.33 15.07 4.44 4.44 Total: -1.00 -27.60 294.33 -5.06 -32.67 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -3.26 Total: 12.72 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.30 Total: -1.08 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: -0.14 Total: -33.32 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.88 Total: -23.38 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.11 Total: -7.78 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.60 -5.06 -32.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.998 kcal (2) G-P(sol) polarization free energy of solvation -27.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds