Wall clock time and date at job start Tue Mar 31 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47204 * 2 1 4 4 C 1.52999 * 109.47055 * 120.00233 * 2 1 3 5 5 N 1.46903 * 109.47224 * 170.79337 * 4 2 1 6 6 C 1.48536 * 110.99732 * 70.37160 * 5 4 2 7 7 C 1.54937 * 103.22795 * 159.72137 * 6 5 4 8 8 C 1.54595 * 102.92177 * 322.58632 * 7 6 5 9 9 O 1.42899 * 110.39390 * 262.99689 * 8 7 6 10 10 C 1.50703 * 110.31066 * 140.87006 * 8 7 6 11 11 H 1.07993 * 120.00209 * 239.08001 * 10 8 7 12 12 C 1.37876 * 119.99807 * 59.08486 * 10 8 7 13 13 N 1.31521 * 119.99784 * 0.90113 * 12 10 8 14 14 Si 1.86797 * 120.00055 * 180.90371 * 12 10 8 15 15 H 1.48494 * 109.47561 * 94.97861 * 14 12 10 16 16 H 1.48498 * 109.46867 * 214.98213 * 14 12 10 17 17 H 1.48499 * 109.46878 * 334.97731 * 14 12 10 18 18 C 1.47903 * 111.00371 * 187.76642 * 5 4 2 19 19 C 1.53000 * 109.46962 * 240.00044 * 2 1 3 20 20 F 1.39902 * 109.47190 * 299.99713 * 19 2 1 21 21 F 1.39894 * 109.47254 * 60.00389 * 19 2 1 22 22 F 1.39903 * 109.47186 * 180.02562 * 19 2 1 23 23 H 1.08999 * 109.47239 * 295.42525 * 1 2 3 24 24 H 1.09002 * 109.47446 * 55.42745 * 1 2 3 25 25 H 1.09003 * 109.47523 * 175.43359 * 1 2 3 26 26 H 0.96704 * 113.99868 * 202.77600 * 3 2 1 27 27 H 1.09000 * 109.47025 * 290.79077 * 4 2 1 28 28 H 1.09000 * 109.47295 * 50.79280 * 4 2 1 29 29 H 1.09000 * 110.66683 * 278.15414 * 6 5 4 30 30 H 1.08997 * 110.67181 * 41.28393 * 6 5 4 31 31 H 1.08994 * 110.72927 * 204.22748 * 7 6 5 32 32 H 1.09007 * 110.87710 * 81.01031 * 7 6 5 33 33 H 0.96701 * 114.00086 * 295.77014 * 9 8 7 34 34 H 0.97001 * 119.99510 * 180.02562 * 13 12 10 35 35 H 1.09004 * 109.91059 * 333.50888 * 18 5 4 36 36 H 1.08995 * 109.91687 * 94.60064 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.4921 -0.9162 1.1436 6 6 4.2134 0.3757 1.2745 7 6 5.6484 -0.0576 1.6664 8 6 5.4021 -1.2635 2.6019 9 8 5.4456 -0.8500 3.9691 10 6 6.4263 -2.3396 2.3489 11 1 6.1090 -3.3269 2.0474 12 6 7.7684 -2.0637 2.5026 13 7 8.1538 -0.8665 2.8871 14 14 9.0393 -3.3904 2.1646 15 1 9.5341 -3.2583 0.7708 16 1 10.1750 -3.2400 3.1094 17 1 8.4190 -4.7275 2.3451 18 6 3.9935 -1.7709 2.2416 19 6 2.0399 -0.7212 -1.2493 20 9 1.5736 -2.0403 -1.2492 21 9 1.5737 -0.0617 -2.3915 22 9 3.4389 -0.7218 -1.2490 23 1 -0.3634 0.4412 0.9281 24 1 -0.3634 0.5831 -0.8462 25 1 -0.3634 -1.0244 -0.0818 26 1 2.9053 1.4465 -0.3420 27 1 1.8171 -0.1214 2.1315 28 1 1.5486 -1.6905 1.3352 29 1 4.2191 0.9110 0.3250 30 1 3.7683 0.9871 2.0594 31 1 6.1619 0.7439 2.1973 32 1 6.2163 -0.3615 0.7869 33 1 6.3092 -0.5203 4.2530 34 1 9.0981 -0.6724 2.9948 35 1 3.3360 -1.6873 3.1070 36 1 4.0425 -2.8086 1.9116 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592154141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:50 Heat of formation + Delta-G solvation = -256.303708 kcal Electronic energy + Delta-G solvation = -24760.550020 eV Core-core repulsion = 20636.360150 eV Total energy + Delta-G solvation = -4124.189869 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.02223 -48.55083 -48.43849 -40.58503 -38.75458 -36.25364 -34.17619 -33.63267 -31.04471 -29.86826 -27.51442 -26.96364 -25.46475 -22.45459 -21.88131 -21.26892 -20.06458 -19.32687 -19.25442 -19.06540 -17.22968 -16.89292 -16.67687 -16.00531 -15.66074 -15.53898 -15.40449 -15.14977 -14.90181 -14.78188 -14.65416 -14.57897 -14.50901 -14.29553 -13.89435 -13.56404 -13.35228 -13.23246 -13.16738 -13.00342 -12.71409 -12.46030 -12.32453 -12.12410 -11.98808 -11.81020 -11.29419 -10.99426 -10.60627 -10.09611 -9.41413 -8.20745 -6.34462 1.39756 1.42462 1.51792 1.70480 2.39326 2.63762 2.71391 2.91424 3.06391 3.09732 3.34478 3.72557 3.84616 3.96917 4.12867 4.31953 4.44492 4.52603 4.54731 4.66792 4.67854 4.72105 4.82646 5.10757 5.11743 5.20318 5.42024 5.63421 5.77016 5.88600 6.05565 6.16823 6.23906 6.70218 7.34489 7.41871 8.84576 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.027574 B = 0.005543 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.206566 B = 5049.809520 C = 5392.395896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.111 3.889 3 O -0.541 6.541 4 C 0.016 3.984 5 N -0.516 5.516 6 C 0.044 3.956 7 C -0.105 4.105 8 C 0.226 3.774 9 O -0.600 6.600 10 C -0.553 4.553 11 H 0.051 0.949 12 C 0.029 3.971 13 N -0.912 5.912 14 Si 0.956 3.044 15 H -0.278 1.278 16 H -0.280 1.280 17 H -0.273 1.273 18 C 0.066 3.934 19 C 0.426 3.574 20 F -0.182 7.182 21 F -0.187 7.187 22 F -0.171 7.171 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.388 0.612 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.376 0.624 34 H 0.268 0.732 35 H 0.041 0.959 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.647 3.005 -6.461 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.068 3.932 3 O -0.353 6.353 4 C -0.112 4.112 5 N -0.240 5.240 6 C -0.084 4.084 7 C -0.144 4.144 8 C 0.186 3.814 9 O -0.408 6.408 10 C -0.591 4.591 11 H 0.070 0.930 12 C -0.171 4.171 13 N -0.551 5.551 14 Si 0.782 3.218 15 H -0.204 1.204 16 H -0.205 1.205 17 H -0.198 1.198 18 C -0.062 4.062 19 C 0.372 3.628 20 F -0.163 7.163 21 F -0.169 7.169 22 F -0.152 7.152 23 H 0.116 0.884 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.242 0.758 27 H 0.086 0.914 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.225 0.775 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.594 2.773 -6.734 16.310 hybrid contribution 2.256 -0.373 0.223 2.297 sum -12.338 2.401 -6.511 14.156 Atomic orbital electron populations 1.21958 0.87256 1.05169 1.05909 1.22541 0.98606 0.82961 0.89112 1.86642 1.37467 1.23833 1.87339 1.23071 0.89681 1.01932 0.96543 1.64961 1.03409 1.11952 1.43707 1.23361 0.94413 0.90836 0.99757 1.22688 0.94313 0.98250 0.99187 1.19601 0.91533 0.91144 0.79083 1.86092 1.38215 1.86165 1.30377 1.21932 0.92224 0.97966 1.47008 0.93026 1.25656 1.00112 0.97490 0.93885 1.69814 1.16969 1.21066 1.47293 0.85577 0.78628 0.79670 0.77925 1.20368 1.20548 1.19790 1.22618 0.94930 0.97273 0.91340 1.21520 0.76492 0.78266 0.86566 1.93143 1.88450 1.37957 1.96767 1.93161 1.88542 1.80741 1.54422 1.93275 1.29271 1.96101 1.96545 0.88410 0.89838 0.88485 0.75807 0.91356 0.87727 0.89726 0.93630 0.93136 0.93728 0.77518 0.92281 0.94056 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.59 71.98 0.62 -1.85 16 2 C 0.11 2.62 0.78 -10.80 -0.01 2.62 16 3 O -0.54 -13.31 12.17 -148.98 -1.81 -15.12 16 4 C 0.02 0.45 3.85 86.30 0.33 0.78 16 5 N -0.52 -18.21 3.22 -883.01 -2.84 -21.05 16 6 C 0.04 1.57 4.76 86.65 0.41 1.98 16 7 C -0.11 -4.84 5.22 31.80 0.17 -4.67 16 8 C 0.23 11.12 0.99 -10.66 -0.01 11.11 16 9 O -0.60 -30.93 12.94 -148.98 -1.93 -32.86 16 10 C -0.55 -29.91 8.12 25.60 0.21 -29.70 16 11 H 0.05 2.82 7.36 -2.91 -0.02 2.80 16 12 C 0.03 1.53 5.23 84.65 0.44 1.98 16 13 N -0.91 -48.77 10.86 21.45 0.23 -48.54 16 14 Si 0.96 42.71 29.54 68.60 2.03 44.73 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 C 0.07 2.77 6.14 86.45 0.53 3.30 16 19 C 0.43 11.45 2.25 71.98 0.16 11.61 16 20 F -0.18 -4.97 16.37 44.97 0.74 -4.23 16 21 F -0.19 -4.82 16.82 44.97 0.76 -4.06 16 22 F -0.17 -5.53 13.46 44.97 0.61 -4.93 16 23 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.08 1.34 7.93 -2.39 -0.02 1.32 16 25 H 0.10 1.38 7.68 -2.39 -0.02 1.36 16 26 H 0.39 9.14 5.40 -74.05 -0.40 8.74 16 27 H 0.07 1.84 7.88 -2.39 -0.02 1.82 16 28 H 0.10 2.56 8.00 -2.39 -0.02 2.54 16 29 H 0.08 2.64 4.93 -2.39 -0.01 2.63 16 30 H 0.05 1.62 7.84 -2.39 -0.02 1.60 16 31 H 0.05 2.43 7.93 -2.39 -0.02 2.41 16 32 H 0.04 2.22 7.85 -2.38 -0.02 2.21 16 33 H 0.38 19.86 7.44 -74.06 -0.55 19.31 16 34 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 35 H 0.04 1.67 7.59 -2.38 -0.02 1.66 16 36 H 0.07 3.14 7.40 -2.39 -0.02 3.12 16 Total: -1.00 -58.32 294.33 0.81 -57.52 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.18 Total: 31.39 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 2.85 Total: -2.85 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -2.61 Total: -69.59 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -3.74 Total: -47.98 kcal Atomic # 9 Polarization: -15.31 SS G_CDS: 2.10 Total: -13.22 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -58.32 0.81 -57.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.786 kcal (2) G-P(sol) polarization free energy of solvation -58.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds