Wall clock time and date at job start Tue Mar 31 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 117.00100 * 2 1 4 4 O 1.20818 * 119.99985 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99540 * 180.02562 * 3 2 1 6 6 H 1.09001 * 115.55019 * 317.46503 * 5 3 2 7 7 C 1.52999 * 117.49422 * 171.80162 * 5 3 2 8 8 C 1.52996 * 117.51848 * 103.17320 * 5 3 2 9 9 H 1.09000 * 117.49932 * 214.96759 * 8 5 3 10 10 C 1.50704 * 117.49795 * 359.97438 * 8 5 3 11 11 O 1.21276 * 119.99937 * 3.40965 * 10 8 5 12 12 N 1.34777 * 120.00174 * 183.40210 * 10 8 5 13 13 C 1.47425 * 125.64328 * 359.69329 * 12 10 8 14 14 C 1.55131 * 104.71850 * 155.81773 * 13 12 10 15 15 C 1.55150 * 101.48851 * 37.29748 * 14 13 12 16 16 O 1.42900 * 110.72455 * 82.69531 * 15 14 13 17 17 C 1.50701 * 110.87461 * 205.89923 * 15 14 13 18 18 H 1.07997 * 119.99670 * 113.60433 * 17 15 14 19 19 C 1.37871 * 120.00038 * 293.61018 * 17 15 14 20 20 N 1.31519 * 120.00050 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00228 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46994 * 89.99714 * 21 19 17 23 23 H 1.48496 * 109.46982 * 209.99857 * 21 19 17 24 24 H 1.48497 * 109.46783 * 329.99732 * 21 19 17 25 25 C 1.47018 * 125.65188 * 180.02562 * 12 10 8 26 26 H 1.09009 * 109.46882 * 59.99655 * 1 2 3 27 27 H 1.08994 * 109.47491 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47292 * 299.99993 * 1 2 3 29 29 H 1.09004 * 117.50098 * 359.97438 * 7 5 3 30 30 H 1.09002 * 117.49772 * 144.99486 * 7 5 3 31 31 H 1.08996 * 110.37134 * 274.74414 * 13 12 10 32 32 H 1.08999 * 110.36811 * 37.07111 * 13 12 10 33 33 H 1.08998 * 111.19293 * 279.18583 * 14 13 12 34 34 H 1.09003 * 110.93891 * 155.29203 * 14 13 12 35 35 H 0.96695 * 113.99810 * 66.47299 * 16 15 14 36 36 H 0.96995 * 119.99882 * 179.97438 * 20 19 17 37 37 H 1.08995 * 109.88366 * 300.44275 * 25 12 10 38 38 H 1.09006 * 109.87899 * 61.60394 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0740 0.5755 0.6639 7 6 4.2015 2.6532 -0.1941 8 6 4.2557 1.6207 -1.3219 9 1 5.2167 1.1491 -1.5269 10 6 3.3776 1.8563 -2.5239 11 8 2.1707 1.8298 -2.4078 12 7 3.9336 2.0965 -3.7279 13 6 5.3794 2.1630 -4.0087 14 6 5.5030 1.8336 -5.5196 15 6 4.2462 2.5394 -6.0936 16 8 4.5005 3.9291 -6.3083 17 6 3.7954 1.8784 -7.3707 18 1 2.8495 1.3585 -7.4048 19 6 4.5906 1.9375 -8.4955 20 7 5.7424 2.5710 -8.4540 21 14 4.0322 1.1176 -10.0783 22 1 3.2466 2.0847 -10.8863 23 1 5.2198 0.6754 -10.8524 24 1 3.1862 -0.0591 -9.7544 25 6 3.1989 2.3424 -4.9774 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.5309 3.5030 -0.3214 30 1 5.1270 2.8607 0.3430 31 1 5.7600 3.1636 -3.8039 32 1 5.9157 1.4232 -3.4145 33 1 5.4608 0.7583 -5.6932 34 1 6.4153 2.2591 -5.9377 35 1 5.1520 4.1075 -7.0002 36 1 6.3020 2.6122 -9.2452 37 1 2.5660 1.4860 -5.2100 38 1 2.5891 3.2405 -4.8782 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:21 Heat of formation + Delta-G solvation = -136.791662 kcal Electronic energy + Delta-G solvation = -22955.953077 eV Core-core repulsion = 19378.802380 eV Total energy + Delta-G solvation = -3577.150698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.67794 -39.38910 -37.71598 -36.44333 -35.53412 -34.37540 -32.18716 -29.87146 -28.49875 -28.04889 -25.86697 -24.43101 -23.61841 -22.08739 -20.48160 -19.65310 -18.84899 -17.92072 -17.24716 -16.74978 -16.15122 -15.96726 -15.44070 -15.01858 -14.68517 -14.56840 -14.18356 -13.71303 -13.22794 -13.07190 -12.89963 -12.41590 -12.13877 -12.02055 -11.91600 -11.60612 -11.45374 -11.38455 -10.95577 -10.86207 -10.73410 -10.62155 -10.57468 -10.51257 -10.23239 -10.16145 -9.53445 -9.37614 -8.70069 -8.25874 -8.07100 -6.33662 -4.40914 2.25948 2.72600 2.86991 3.18057 3.25428 3.28556 3.41792 3.81011 4.23558 4.51680 4.58875 4.64352 4.93565 4.95199 5.06833 5.20009 5.32468 5.45301 5.47670 5.51813 5.65896 5.75192 5.87089 5.89985 5.98064 6.16359 6.42017 6.61666 6.64366 6.85008 6.91497 7.25190 7.29175 7.69710 7.95774 8.01353 8.05300 8.52895 8.61800 9.27680 9.41767 10.74271 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027802 B = 0.004205 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.873159 B = 6656.667579 C = 7211.281136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.359 6.359 3 C 0.505 3.495 4 O -0.494 6.494 5 C -0.140 4.140 6 H 0.142 0.858 7 C -0.117 4.117 8 C -0.156 4.156 9 H 0.137 0.863 10 C 0.543 3.457 11 O -0.541 6.541 12 N -0.600 5.600 13 C 0.096 3.904 14 C -0.137 4.137 15 C 0.248 3.752 16 O -0.587 6.587 17 C -0.535 4.535 18 H 0.065 0.935 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.123 3.877 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.386 0.614 36 H 0.269 0.731 37 H 0.072 0.928 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -4.047 14.389 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.276 6.276 3 C 0.347 3.653 4 O -0.380 6.380 5 C -0.159 4.159 6 H 0.160 0.840 7 C -0.154 4.154 8 C -0.177 4.177 9 H 0.154 0.846 10 C 0.330 3.670 11 O -0.420 6.420 12 N -0.332 5.332 13 C -0.027 4.027 14 C -0.176 4.176 15 C 0.208 3.792 16 O -0.397 6.397 17 C -0.574 4.574 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.538 5.538 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.002 3.998 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.238 0.762 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.139 -3.663 14.855 15.301 hybrid contribution 0.193 -0.567 -1.429 1.549 sum 0.053 -4.230 13.426 14.077 Atomic orbital electron populations 1.23170 0.76483 1.03073 1.02507 1.86392 1.23244 1.33385 1.84575 1.21953 0.89791 0.81488 0.72042 1.90620 1.66402 1.36348 1.44602 1.21700 0.89666 1.02996 1.01543 0.84004 1.23125 1.02540 0.92069 0.97653 1.22434 1.01305 1.05742 0.88240 0.84553 1.19077 0.87685 0.77587 0.82640 1.90708 1.14408 1.52735 1.84099 1.48473 1.08806 1.68194 1.07714 1.22573 0.80401 1.00444 0.99259 1.23360 1.02349 1.01416 0.90484 1.19433 0.88627 0.80259 0.90914 1.86101 1.66505 1.25407 1.61685 1.21546 1.05843 1.34754 0.95211 0.91703 1.24982 0.94333 0.94495 0.99155 1.69570 1.11184 1.42763 1.30302 0.86393 0.78295 0.79751 0.82437 1.20341 1.20995 1.19708 1.22112 0.95369 1.00487 0.81875 0.91573 0.88580 0.92421 0.86732 0.86253 0.91646 0.92060 0.91364 0.89566 0.76159 0.92058 0.90982 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.36 -5.44 10.57 -39.26 -0.41 -5.85 16 3 C 0.50 8.19 5.46 36.01 0.20 8.39 16 4 O -0.49 -9.47 14.98 -25.77 -0.39 -9.86 16 5 C -0.14 -1.72 6.30 -91.77 -0.58 -2.30 16 6 H 0.14 1.21 8.14 -51.93 -0.42 0.78 16 7 C -0.12 -1.32 9.75 -26.73 -0.26 -1.58 16 8 C -0.16 -2.09 5.58 -91.77 -0.51 -2.60 16 9 H 0.14 1.43 6.96 -51.93 -0.36 1.07 16 10 C 0.54 10.26 7.61 -10.98 -0.08 10.17 16 11 O -0.54 -12.06 13.74 -15.43 -0.21 -12.27 16 12 N -0.60 -11.81 3.32 -170.38 -0.57 -12.38 16 13 C 0.10 1.66 6.69 -2.41 -0.02 1.65 16 14 C -0.14 -2.87 5.69 -24.47 -0.14 -3.01 16 15 C 0.25 5.93 0.85 -89.94 -0.08 5.85 16 16 O -0.59 -14.72 13.08 -35.23 -0.46 -15.18 16 17 C -0.54 -13.88 8.22 -34.44 -0.28 -14.16 16 18 H 0.06 1.69 7.53 -52.49 -0.40 1.30 16 19 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 20 N -0.90 -22.70 10.71 55.43 0.59 -22.11 16 21 Si 0.90 20.04 29.54 -169.99 -5.02 15.01 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 C 0.12 2.80 6.22 -3.06 -0.02 2.78 16 26 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.11 1.58 7.70 -51.93 -0.40 1.18 16 30 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.85 6.95 -51.93 -0.36 0.49 16 33 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 34 H 0.09 1.86 7.78 -51.93 -0.40 1.46 16 35 H 0.39 9.74 6.98 45.56 0.32 10.06 16 36 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.07 1.67 7.63 -51.93 -0.40 1.27 16 38 H 0.06 1.48 8.07 -51.93 -0.42 1.06 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -31.40 320.23 -6.95 -38.35 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.51 Total: 10.94 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -0.80 Total: 8.50 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.03 Total: -34.48 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -1.47 Total: -43.16 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.40 -6.95 -38.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.442 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds