Wall clock time and date at job start Tue Mar 31 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 117.00100 * 2 1 4 4 O 1.20818 * 119.99985 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99540 * 180.02562 * 3 2 1 6 6 H 1.09001 * 115.55019 * 317.46503 * 5 3 2 7 7 C 1.52999 * 117.49422 * 171.80162 * 5 3 2 8 8 C 1.52996 * 117.51848 * 103.17320 * 5 3 2 9 9 H 1.09000 * 117.49932 * 214.96759 * 8 5 3 10 10 C 1.50704 * 117.49795 * 359.97438 * 8 5 3 11 11 O 1.21276 * 119.99937 * 3.40965 * 10 8 5 12 12 N 1.34777 * 120.00174 * 183.40210 * 10 8 5 13 13 C 1.47425 * 125.64328 * 359.69329 * 12 10 8 14 14 C 1.55131 * 104.71850 * 155.81773 * 13 12 10 15 15 C 1.55150 * 101.48851 * 37.29748 * 14 13 12 16 16 O 1.42900 * 110.72455 * 82.69531 * 15 14 13 17 17 C 1.50701 * 110.87461 * 205.89923 * 15 14 13 18 18 H 1.07997 * 119.99670 * 113.60433 * 17 15 14 19 19 C 1.37871 * 120.00038 * 293.61018 * 17 15 14 20 20 N 1.31519 * 120.00050 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00228 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46994 * 89.99714 * 21 19 17 23 23 H 1.48496 * 109.46982 * 209.99857 * 21 19 17 24 24 H 1.48497 * 109.46783 * 329.99732 * 21 19 17 25 25 C 1.47018 * 125.65188 * 180.02562 * 12 10 8 26 26 H 1.09009 * 109.46882 * 59.99655 * 1 2 3 27 27 H 1.08994 * 109.47491 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47292 * 299.99993 * 1 2 3 29 29 H 1.09004 * 117.50098 * 359.97438 * 7 5 3 30 30 H 1.09002 * 117.49772 * 144.99486 * 7 5 3 31 31 H 1.08996 * 110.37134 * 274.74414 * 13 12 10 32 32 H 1.08999 * 110.36811 * 37.07111 * 13 12 10 33 33 H 1.08998 * 111.19293 * 279.18583 * 14 13 12 34 34 H 1.09003 * 110.93891 * 155.29203 * 14 13 12 35 35 H 0.96695 * 113.99810 * 66.47299 * 16 15 14 36 36 H 0.96995 * 119.99882 * 179.97438 * 20 19 17 37 37 H 1.08995 * 109.88366 * 300.44275 * 25 12 10 38 38 H 1.09006 * 109.87899 * 61.60394 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0740 0.5755 0.6639 7 6 4.2015 2.6532 -0.1941 8 6 4.2557 1.6207 -1.3219 9 1 5.2167 1.1491 -1.5269 10 6 3.3776 1.8563 -2.5239 11 8 2.1707 1.8298 -2.4078 12 7 3.9336 2.0965 -3.7279 13 6 5.3794 2.1630 -4.0087 14 6 5.5030 1.8336 -5.5196 15 6 4.2462 2.5394 -6.0936 16 8 4.5005 3.9291 -6.3083 17 6 3.7954 1.8784 -7.3707 18 1 2.8495 1.3585 -7.4048 19 6 4.5906 1.9375 -8.4955 20 7 5.7424 2.5710 -8.4540 21 14 4.0322 1.1176 -10.0783 22 1 3.2466 2.0847 -10.8863 23 1 5.2198 0.6754 -10.8524 24 1 3.1862 -0.0591 -9.7544 25 6 3.1989 2.3424 -4.9774 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.5309 3.5030 -0.3214 30 1 5.1270 2.8607 0.3430 31 1 5.7600 3.1636 -3.8039 32 1 5.9157 1.4232 -3.4145 33 1 5.4608 0.7583 -5.6932 34 1 6.4153 2.2591 -5.9377 35 1 5.1520 4.1075 -7.0002 36 1 6.3020 2.6122 -9.2452 37 1 2.5660 1.4860 -5.2100 38 1 2.5891 3.2405 -4.8782 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:21 Heat of formation + Delta-G solvation = -158.625550 kcal Electronic energy + Delta-G solvation = -22956.899866 eV Core-core repulsion = 19378.802380 eV Total energy + Delta-G solvation = -3578.097486 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.91439 -40.82821 -39.25511 -37.73797 -36.74455 -36.15291 -34.16806 -31.57393 -30.16245 -29.13012 -27.56474 -25.66485 -24.91736 -23.51792 -21.69949 -21.33174 -20.19500 -19.37283 -18.98728 -18.03938 -17.40982 -17.27130 -16.98775 -16.84354 -16.12673 -15.93733 -15.64501 -15.21525 -14.78881 -14.45581 -14.13632 -13.90365 -13.82935 -13.41173 -13.25899 -13.16628 -13.10238 -12.89669 -12.68487 -12.45836 -12.28452 -12.02876 -11.77144 -11.75283 -11.70550 -11.45646 -11.30909 -10.95248 -10.64087 -10.15814 -9.67312 -8.27815 -6.41967 1.06449 1.40314 1.43644 1.50828 1.52403 1.68682 2.03022 2.38289 2.77754 2.97740 3.40874 3.53688 3.63524 3.84076 3.91971 3.98548 4.18750 4.22704 4.27557 4.31357 4.44480 4.54859 4.61461 4.65791 4.72609 4.78954 4.88868 5.01046 5.16164 5.22252 5.44758 5.48664 5.52047 5.74645 6.03566 6.53281 6.62023 6.84413 7.06257 7.29142 7.43353 8.78747 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027802 B = 0.004205 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.873159 B = 6656.667579 C = 7211.281136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.492 3.508 4 O -0.537 6.537 5 C -0.138 4.138 6 H 0.192 0.808 7 C -0.099 4.099 8 C -0.160 4.160 9 H 0.180 0.820 10 C 0.530 3.470 11 O -0.586 6.586 12 N -0.604 5.604 13 C 0.105 3.895 14 C -0.128 4.128 15 C 0.235 3.765 16 O -0.596 6.596 17 C -0.566 4.566 18 H 0.049 0.951 19 C 0.040 3.960 20 N -0.906 5.906 21 Si 0.959 3.041 22 H -0.279 1.279 23 H -0.273 1.273 24 H -0.275 1.275 25 C 0.130 3.870 26 H 0.037 0.963 27 H 0.132 0.868 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.173 0.827 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.383 0.617 36 H 0.274 0.726 37 H 0.055 0.945 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.441 -5.284 15.961 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.336 3.664 4 O -0.426 6.426 5 C -0.156 4.156 6 H 0.209 0.791 7 C -0.136 4.136 8 C -0.181 4.181 9 H 0.198 0.802 10 C 0.321 3.679 11 O -0.468 6.468 12 N -0.336 5.336 13 C -0.016 4.016 14 C -0.167 4.167 15 C 0.195 3.805 16 O -0.406 6.406 17 C -0.604 4.604 18 H 0.067 0.933 19 C -0.162 4.162 20 N -0.546 5.546 21 Si 0.785 3.215 22 H -0.205 1.205 23 H -0.198 1.198 24 H -0.200 1.200 25 C 0.006 3.994 26 H 0.056 0.944 27 H 0.150 0.850 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.191 0.809 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.235 0.765 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.270 -4.914 16.443 17.311 hybrid contribution -0.662 -0.157 -1.937 2.053 sum 1.609 -5.070 14.506 15.450 Atomic orbital electron populations 1.23379 0.75519 1.05193 1.01623 1.86393 1.24416 1.33155 1.84170 1.22929 0.91704 0.81053 0.70697 1.90597 1.67783 1.37638 1.46558 1.22064 0.87070 1.04992 1.01508 0.79096 1.23327 1.03751 0.90417 0.96152 1.22498 1.01712 1.07979 0.85870 0.80245 1.20202 0.87996 0.76100 0.83629 1.90696 1.16864 1.54331 1.84861 1.48551 1.09490 1.68470 1.07076 1.22640 0.79249 1.02524 0.97219 1.23141 1.00142 1.00361 0.93061 1.19584 0.90467 0.79727 0.90681 1.86087 1.66540 1.26471 1.61502 1.21745 1.05805 1.35847 0.97017 0.93267 1.25556 0.94423 0.94854 1.01321 1.69613 1.11350 1.42563 1.31028 0.85543 0.78073 0.78654 0.79257 1.20489 1.19836 1.20014 1.21778 0.95198 0.98567 0.83817 0.94358 0.84979 0.91435 0.89980 0.80942 0.90755 0.87073 0.92025 0.90256 0.76522 0.91635 0.92651 0.94622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.56 113.37 1.20 2.09 16 2 O -0.36 -10.76 10.57 -51.43 -0.54 -11.30 16 3 C 0.49 15.56 5.46 71.24 0.39 15.95 16 4 O -0.54 -21.08 14.98 28.70 0.43 -20.65 16 5 C -0.14 -2.89 6.30 -11.54 -0.07 -2.97 16 6 H 0.19 2.10 8.14 -2.39 -0.02 2.09 16 7 C -0.10 -1.88 9.75 30.59 0.30 -1.58 16 8 C -0.16 -3.68 5.58 -11.54 -0.06 -3.74 16 9 H 0.18 2.57 6.96 -2.39 -0.02 2.55 16 10 C 0.53 19.62 7.61 87.66 0.67 20.29 16 11 O -0.59 -26.90 13.74 17.05 0.23 -26.66 16 12 N -0.60 -23.42 3.32 -811.35 -2.70 -26.12 16 13 C 0.10 3.37 6.69 86.93 0.58 3.95 16 14 C -0.13 -5.25 5.69 32.06 0.18 -5.07 16 15 C 0.24 11.48 0.85 -10.35 -0.01 11.47 16 16 O -0.60 -30.52 13.08 -148.98 -1.95 -32.47 16 17 C -0.57 -30.12 8.22 25.60 0.21 -29.91 16 18 H 0.05 2.69 7.53 -2.91 -0.02 2.66 16 19 C 0.04 2.03 5.28 84.65 0.45 2.47 16 20 N -0.91 -45.55 10.71 21.45 0.23 -45.32 16 21 Si 0.96 41.12 29.54 68.60 2.03 43.15 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 25 C 0.13 6.12 6.22 86.73 0.54 6.66 16 26 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.07 1.50 8.13 -2.38 -0.02 1.48 16 29 H 0.08 2.15 7.70 -2.39 -0.02 2.14 16 30 H 0.17 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.11 2.50 6.95 -2.39 -0.02 2.49 16 33 H 0.06 2.57 8.04 -2.39 -0.02 2.55 16 34 H 0.08 3.34 7.78 -2.39 -0.02 3.32 16 35 H 0.38 19.65 6.98 -74.06 -0.52 19.14 16 36 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 37 H 0.06 2.73 7.63 -2.39 -0.02 2.71 16 38 H 0.04 1.81 8.07 -2.38 -0.02 1.80 16 Total: -1.00 -73.11 320.23 2.66 -70.44 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.57 Total: 29.30 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 4.37 Total: 19.62 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -2.47 Total: -71.44 kcal Atomic # 8 Polarization: -89.25 SS G_CDS: -1.83 Total: -91.08 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -73.11 2.66 -70.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.182 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds