Wall clock time and date at job start Tue Mar 31 2020 02:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46904 * 2 1 4 4 C 1.50697 * 109.46933 * 240.00503 * 2 1 3 5 5 H 1.08006 * 119.99858 * 239.99978 * 4 2 1 6 6 C 1.37877 * 120.00079 * 59.99625 * 4 2 1 7 7 N 1.31510 * 120.00005 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99863 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46993 * 60.00033 * 8 6 4 10 10 H 1.48499 * 109.46886 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47286 * 300.00103 * 8 6 4 12 12 C 1.52995 * 109.47261 * 119.99880 * 2 1 3 13 13 N 1.46497 * 109.47352 * 300.00150 * 12 2 1 14 14 C 1.34780 * 119.99799 * 180.02562 * 13 12 2 15 15 O 1.21282 * 120.00246 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00103 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.46212 * 40.01270 * 16 14 13 18 18 C 1.53057 * 109.47105 * 280.04288 * 16 14 13 19 19 C 1.50805 * 109.18353 * 286.69010 * 18 16 14 20 20 O 1.21227 * 120.01990 * 146.04240 * 19 18 16 21 21 N 1.34564 * 119.96133 * 325.77216 * 19 18 16 22 22 C 1.34337 * 120.98926 * 4.41515 * 21 19 18 23 23 O 1.21544 * 119.20680 * 192.02296 * 22 21 19 24 24 N 1.34291 * 121.58297 * 12.03382 * 22 21 19 25 25 H 1.09005 * 109.47100 * 299.99762 * 1 2 3 26 26 H 1.08993 * 109.47875 * 59.99881 * 1 2 3 27 27 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47319 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47200 * 300.00685 * 3 2 1 30 30 H 1.09005 * 109.47048 * 60.00206 * 3 2 1 31 31 H 0.97010 * 119.99835 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46829 * 179.97438 * 12 2 1 33 33 H 1.09005 * 109.46950 * 60.00386 * 12 2 1 34 34 H 0.96999 * 120.00190 * 359.97438 * 13 12 2 35 35 H 1.09001 * 109.51712 * 166.77859 * 18 16 14 36 36 H 1.09006 * 109.52418 * 46.60446 * 18 16 14 37 37 H 0.97000 * 119.50400 * 184.43133 * 21 19 18 38 38 H 0.96998 * 119.53595 * 185.71402 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3224 -1.1193 -4.0081 9 1 1.8280 -2.5196 -4.0083 10 1 1.8267 -0.4196 -5.2205 11 1 3.8073 -1.1187 -4.0079 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5751 -1.4769 3.7807 16 6 1.3751 0.2191 4.9000 17 1 0.3431 0.5327 4.7422 18 6 2.2456 1.4484 5.1712 19 6 3.5827 1.0006 5.7058 20 8 4.5856 1.6232 5.4299 21 7 3.6612 -0.0873 6.4939 22 6 2.5766 -0.8391 6.7451 23 8 2.6260 -1.6762 7.6250 24 7 1.4392 -0.6882 6.0473 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 0.7087 1.1616 -3.4844 32 1 3.1300 -0.7216 1.2489 33 1 1.6767 -1.7489 1.2492 34 1 0.9943 0.7582 2.3564 35 1 1.7551 2.0872 5.9057 36 1 2.3913 2.0033 4.2443 37 1 4.5136 -0.3323 6.8866 38 1 0.6490 -1.1871 6.3071 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597763101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:11 Heat of formation + Delta-G solvation = -130.551836 kcal Electronic energy + Delta-G solvation = -22980.668642 eV Core-core repulsion = 19436.081274 eV Total energy + Delta-G solvation = -3544.587368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.88015 -40.65366 -39.97055 -38.22592 -36.85903 -35.36449 -35.04610 -32.89601 -31.77034 -27.90976 -27.50001 -27.23768 -25.81620 -24.56428 -22.37385 -20.85671 -20.62458 -19.30582 -19.14171 -18.20608 -17.81813 -17.46866 -17.08266 -16.64893 -16.42800 -16.34255 -15.70054 -15.51527 -15.15037 -14.83715 -14.62380 -14.39670 -13.96235 -13.47428 -13.34215 -13.12929 -13.04725 -12.64902 -12.62846 -12.21005 -12.12545 -11.95047 -11.56404 -11.44362 -11.39538 -11.38337 -11.20154 -10.69101 -10.37537 -10.26514 -9.97515 -8.01381 -6.16132 0.61244 1.35945 1.43320 1.45728 1.51205 1.58531 1.86667 2.18740 2.36864 2.50291 3.22607 3.26227 3.41354 3.69330 4.10112 4.23310 4.44661 4.51146 4.53062 4.76350 4.85253 5.02767 5.11319 5.13764 5.18664 5.25009 5.37413 5.59799 5.69679 5.73138 5.76695 6.16282 6.22368 6.26190 6.40270 6.46760 6.61359 6.87865 7.08985 7.25970 7.51480 8.96609 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.031272 B = 0.003905 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.163930 B = 7168.640808 C = 7283.466479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.531 4.531 5 H 0.039 0.961 6 C 0.033 3.967 7 N -0.895 5.895 8 Si 0.938 3.062 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.149 3.851 13 N -0.697 5.697 14 C 0.475 3.525 15 O -0.583 6.583 16 C 0.132 3.868 17 H 0.198 0.802 18 C -0.144 4.144 19 C 0.518 3.482 20 O -0.537 6.537 21 N -0.673 5.673 22 C 0.724 3.276 23 O -0.596 6.596 24 N -0.691 5.691 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.260 0.740 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.416 0.584 35 H 0.179 0.821 36 H 0.144 0.856 37 H 0.425 0.575 38 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 5.628 15.463 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.570 4.570 5 H 0.057 0.943 6 C -0.168 4.168 7 N -0.533 5.533 8 Si 0.765 3.235 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.025 3.975 13 N -0.349 5.349 14 C 0.260 3.740 15 O -0.463 6.463 16 C 0.023 3.977 17 H 0.215 0.785 18 C -0.184 4.184 19 C 0.308 3.692 20 O -0.412 6.412 21 N -0.341 5.341 22 C 0.425 3.575 23 O -0.474 6.474 24 N -0.350 5.350 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.255 0.745 35 H 0.196 0.804 36 H 0.162 0.838 37 H 0.265 0.735 38 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -4.501 5.099 15.552 16.974 hybrid contribution 0.705 -0.922 -1.166 1.645 sum -3.796 4.177 14.385 15.453 Atomic orbital electron populations 1.21662 0.96525 0.98728 1.00878 1.18365 0.93649 0.93034 0.89956 1.21683 0.97660 0.97722 1.00890 1.21254 1.31722 1.12127 0.91881 0.94284 1.25354 0.95192 0.95573 1.00650 1.69876 1.36823 1.23023 1.23595 0.85937 0.78511 0.78932 0.80116 1.20411 1.20737 1.20662 1.21223 0.96670 0.95171 0.84448 1.46041 1.52285 1.31817 1.04804 1.21911 0.80716 0.85099 0.86302 1.90744 1.39656 1.28600 1.87303 1.21394 1.06173 0.87966 0.82208 0.78487 1.22475 0.89756 0.98034 1.08089 1.21650 0.93150 0.78667 0.75741 1.90795 1.39299 1.54738 1.56347 1.44224 1.13599 1.27285 1.48970 1.15684 0.80727 0.80011 0.81115 1.91004 1.82914 1.37706 1.35784 1.44686 1.12454 1.48104 1.29713 0.93266 0.92134 0.96470 0.96883 0.92040 0.93321 0.93035 0.95085 0.94365 0.74533 0.80402 0.83836 0.73460 0.72025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 8.08 71.98 0.58 -4.14 16 2 C 0.05 2.14 0.50 -52.93 -0.03 2.12 16 3 C -0.12 -4.90 8.08 71.98 0.58 -4.32 16 4 C -0.53 -27.06 8.01 25.60 0.21 -26.85 16 5 H 0.04 2.06 7.74 -2.91 -0.02 2.04 16 6 C 0.03 1.66 5.15 84.66 0.44 2.09 16 7 N -0.89 -45.67 9.35 21.45 0.20 -45.47 16 8 Si 0.94 41.72 29.54 68.60 2.03 43.74 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 C 0.15 5.71 4.50 86.38 0.39 6.10 16 13 N -0.70 -18.43 4.96 -463.07 -2.30 -20.73 16 14 C 0.48 12.08 6.72 87.66 0.59 12.66 16 15 O -0.58 -21.42 16.15 -3.04 -0.05 -21.47 16 16 C 0.13 1.61 3.63 44.28 0.16 1.77 16 17 H 0.20 0.14 8.14 -2.38 -0.02 0.12 16 18 C -0.14 -1.57 5.71 29.90 0.17 -1.40 16 19 C 0.52 11.38 7.45 87.72 0.65 12.03 16 20 O -0.54 -15.97 17.93 -2.86 -0.05 -16.02 16 21 N -0.67 -15.31 5.18 -441.65 -2.29 -17.59 16 22 C 0.72 17.16 7.98 179.34 1.43 18.59 16 23 O -0.60 -18.37 17.97 -3.85 -0.07 -18.44 16 24 N -0.69 -11.02 4.90 -462.62 -2.27 -13.28 16 25 H 0.05 1.47 6.86 -2.38 -0.02 1.45 16 26 H 0.06 2.74 6.07 -2.39 -0.01 2.72 16 27 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 2.82 6.07 -2.39 -0.01 2.81 16 30 H 0.05 1.50 6.86 -2.38 -0.02 1.48 16 31 H 0.26 12.90 8.31 -92.70 -0.77 12.13 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.42 8.14 6.16 -92.71 -0.57 7.57 16 35 H 0.18 0.29 8.14 -2.39 -0.02 0.28 16 36 H 0.14 1.41 8.07 -2.38 -0.02 1.39 16 37 H 0.42 9.44 8.86 -92.71 -0.82 8.62 16 38 H 0.44 5.17 8.90 -92.71 -0.83 4.34 16 Total: -1.00 -75.95 315.87 -0.71 -76.66 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -1.09 Total: 13.94 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 5.17 Total: 18.65 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -6.65 Total: -97.08 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -0.17 Total: -55.92 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -75.95 -0.71 -76.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597763101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.891 kcal (2) G-P(sol) polarization free energy of solvation -75.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds