Wall clock time and date at job start Tue Mar 31 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47286 * 2 1 4 4 H 1.09002 * 109.47030 * 305.00589 * 3 2 1 5 5 C 1.50696 * 109.47174 * 185.00087 * 3 2 1 6 6 H 1.08000 * 119.99670 * 240.00017 * 5 3 2 7 7 C 1.37871 * 120.00308 * 60.00390 * 5 3 2 8 8 N 1.31516 * 119.99703 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00325 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47091 * 59.99779 * 9 7 5 11 11 H 1.48501 * 109.47111 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47296 * 299.99984 * 9 7 5 13 13 N 1.46501 * 109.46672 * 64.99841 * 3 2 1 14 14 C 1.34778 * 120.00317 * 274.99916 * 13 3 2 15 15 O 1.21283 * 120.00013 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99890 * 180.02562 * 14 13 3 17 17 N 1.46503 * 109.46690 * 180.02562 * 16 14 13 18 18 C 1.47317 * 126.68513 * 269.98018 * 17 16 14 19 19 C 1.51581 * 103.58722 * 179.84385 * 18 17 16 20 20 O 1.21243 * 127.15351 * 180.24592 * 19 18 17 21 21 N 1.34766 * 105.69005 * 0.31936 * 19 18 17 22 22 C 1.46499 * 124.17994 * 179.97438 * 21 19 18 23 23 C 1.33791 * 111.64117 * 359.66261 * 21 19 18 24 24 O 1.21540 * 123.76923 * 180.23040 * 23 21 19 25 25 H 1.08999 * 109.46960 * 59.99578 * 1 2 3 26 26 H 1.08998 * 109.46861 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47078 * 299.99854 * 1 2 3 28 28 H 1.09007 * 109.47045 * 240.00292 * 2 1 3 29 29 H 1.08993 * 109.47151 * 120.00012 * 2 1 3 30 30 H 0.97000 * 120.00262 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99887 * 95.00547 * 13 3 2 32 32 H 1.08990 * 109.46764 * 60.00332 * 16 14 13 33 33 H 1.08996 * 109.47052 * 300.00252 * 16 14 13 34 34 H 1.09003 * 110.59914 * 298.56213 * 18 17 16 35 35 H 1.08994 * 110.60091 * 61.51062 * 18 17 16 36 36 H 1.09002 * 109.47391 * 269.70277 * 22 21 19 37 37 H 1.09001 * 109.46813 * 149.70333 * 22 21 19 38 38 H 1.09004 * 109.47041 * 29.70461 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0050 0.8813 -1.3818 10 1 6.5976 0.1473 -0.2349 11 1 6.3978 0.2168 -2.6504 12 1 6.4995 2.2815 -1.3821 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3396 2.6320 0.4345 16 6 0.0367 3.3386 2.6546 17 7 -1.3223 3.8706 2.5270 18 6 -1.7011 5.2123 2.0510 19 6 -3.2150 5.2028 2.1267 20 8 -3.9688 6.1037 1.8265 21 7 -3.5486 3.9854 2.5986 22 6 -4.9253 3.5417 2.8310 23 6 -2.4675 3.2296 2.8223 24 8 -2.5149 2.0911 3.2451 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.8293 -0.0617 -2.9495 31 1 2.2720 2.1231 1.9978 32 1 0.7281 4.1540 2.8668 33 1 0.0681 2.6145 3.4687 34 1 -1.2864 5.9816 2.7025 35 1 -1.3724 5.3613 1.0225 36 1 -5.2188 3.7869 3.8517 37 1 -4.9894 2.4636 2.6836 38 1 -5.5922 4.0445 2.1305 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599761049.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:49 Heat of formation + Delta-G solvation = -71.042455 kcal Electronic energy + Delta-G solvation = -22871.023347 eV Core-core repulsion = 19329.016499 eV Total energy + Delta-G solvation = -3542.006847 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33778 -39.20467 -38.52474 -36.18541 -35.47093 -34.78156 -32.47696 -31.22593 -30.03683 -27.35773 -27.23348 -26.10318 -23.13803 -22.54147 -20.92336 -20.01887 -19.40864 -17.78392 -17.55026 -16.89074 -16.71021 -15.87596 -15.66680 -15.43148 -14.82927 -14.66919 -14.27082 -14.23104 -14.04707 -13.85221 -13.04681 -12.82606 -12.76089 -12.69581 -12.57005 -11.76803 -11.41935 -11.26928 -11.02769 -10.96146 -10.84222 -10.36760 -10.33999 -10.19467 -9.91679 -9.73899 -9.60036 -9.08893 -8.70608 -8.52254 -7.89493 -6.15393 -4.25641 1.53193 1.95210 2.80995 2.96932 3.22594 3.24400 3.28954 3.29611 3.93515 4.04107 4.34271 4.57947 4.88242 5.02238 5.13064 5.15045 5.15813 5.25845 5.36882 5.39805 5.46166 5.76247 6.26340 6.40492 6.47444 6.67018 7.02164 7.04856 7.17967 7.22682 7.33494 7.39719 7.58375 7.68510 7.85759 8.02793 8.15140 8.57843 8.72369 9.03601 9.41688 10.89712 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.032622 B = 0.003900 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.114733 B = 7178.479476 C = 7471.638516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.705 5.705 14 C 0.480 3.520 15 O -0.539 6.539 16 C 0.129 3.871 17 N -0.605 5.605 18 C 0.065 3.935 19 C 0.527 3.473 20 O -0.478 6.478 21 N -0.579 5.579 22 C 0.090 3.910 23 C 0.705 3.295 24 O -0.539 6.539 25 H 0.047 0.953 26 H 0.022 0.978 27 H 0.039 0.961 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.624 8.259 11.306 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.262 3.738 15 O -0.417 6.417 16 C 0.004 3.996 17 N -0.342 5.342 18 C -0.061 4.061 19 C 0.315 3.685 20 O -0.349 6.349 21 N -0.326 5.326 22 C -0.051 4.051 23 C 0.407 3.593 24 O -0.412 6.412 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.545 7.912 10.516 16.257 hybrid contribution 1.317 -0.105 0.134 1.328 sum -8.228 7.807 10.650 15.559 Atomic orbital electron populations 1.21820 0.98245 0.98110 1.01155 1.21939 0.92624 0.99774 1.02296 1.18789 0.94165 0.89196 0.80786 0.93358 1.21181 0.90637 1.39322 1.06337 0.92079 1.24886 0.98609 0.94754 0.95384 1.69886 1.35270 1.37363 1.09348 0.86513 0.84816 0.78293 0.77492 1.20146 1.21149 1.20190 1.46477 1.14348 1.55793 1.18724 1.20776 0.83214 0.80282 0.89507 1.90695 1.51146 1.59577 1.40236 1.21288 0.79722 1.00343 0.98260 1.46949 1.05205 1.14318 1.67725 1.22516 0.92081 0.86658 1.04837 1.20875 0.91268 0.81428 0.74960 1.90802 1.58542 1.38727 1.46792 1.46225 1.09128 1.15979 1.61221 1.21801 0.78373 1.02438 1.02535 1.15747 0.80596 0.84206 0.78741 1.90982 1.85206 1.15127 1.49850 0.93414 0.95899 0.94151 0.88332 0.94978 0.92467 0.77847 0.86844 0.86769 0.85889 0.85525 0.91052 0.89190 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.59 8.73 -34.44 -0.30 -13.89 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.26 11.29 55.43 0.63 -23.63 16 9 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.70 -13.32 5.02 -54.93 -0.28 -13.59 16 14 C 0.48 8.53 6.47 -10.98 -0.07 8.46 16 15 O -0.54 -11.78 13.57 5.56 0.08 -11.70 16 16 C 0.13 1.56 6.63 -5.19 -0.03 1.53 16 17 N -0.60 -7.72 2.51 -181.40 -0.45 -8.17 16 18 C 0.07 0.65 7.66 -4.31 -0.03 0.61 16 19 C 0.53 6.29 8.31 -10.56 -0.09 6.20 16 20 O -0.48 -6.62 17.75 5.59 0.10 -6.52 16 21 N -0.58 -7.26 3.00 -128.16 -0.39 -7.65 16 22 C 0.09 0.87 10.73 59.85 0.64 1.51 16 23 C 0.70 10.46 8.31 -88.02 -0.73 9.73 16 24 O -0.54 -9.73 17.15 5.33 0.09 -9.64 16 25 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.92 5.64 -51.93 -0.29 0.62 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 6.13 8.54 -40.82 -0.35 5.78 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.11 1.28 8.03 -51.93 -0.42 0.86 16 34 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.13 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.90 7.86 -51.93 -0.41 0.49 16 38 H 0.09 0.74 8.00 -51.93 -0.42 0.33 16 LS Contribution 323.84 15.07 4.88 4.88 Total: -1.00 -33.94 323.84 -6.13 -40.07 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.07 Total: 4.71 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: -0.69 Total: 16.21 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.49 Total: -53.04 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: 0.27 Total: -27.86 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.94 -6.13 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599761049.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.974 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds