Wall clock time and date at job start Tue Mar 31 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99717 * 2 1 4 4 C 1.52999 * 109.47159 * 184.89660 * 3 2 1 5 5 N 1.46906 * 109.46898 * 63.68247 * 4 3 2 6 6 C 1.46902 * 110.99879 * 200.07845 * 5 4 3 7 7 C 1.50696 * 109.47174 * 66.04966 * 6 5 4 8 8 H 1.08005 * 120.00109 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00387 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00388 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99712 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47139 * 89.99695 * 11 9 7 13 13 H 1.48501 * 109.47037 * 210.00255 * 11 9 7 14 14 H 1.48500 * 109.46954 * 329.99630 * 11 9 7 15 15 C 1.46900 * 110.99865 * 76.12816 * 5 4 3 16 16 C 1.50697 * 109.47164 * 200.32023 * 15 5 4 17 17 O 1.21273 * 120.00087 * 4.65024 * 16 15 5 18 18 N 1.34782 * 119.99879 * 184.65999 * 16 15 5 19 19 C 1.39504 * 119.99703 * 176.02212 * 18 16 15 20 20 C 1.42026 * 126.89288 * 5.82274 * 19 18 16 21 21 C 1.35247 * 103.95276 * 179.85431 * 20 19 18 22 22 O 1.34090 * 106.61221 * 0.40176 * 21 20 19 23 23 N 1.20914 * 111.74310 * 359.72651 * 22 21 20 24 24 H 1.08994 * 109.46601 * 184.90458 * 1 2 3 25 25 H 1.09002 * 109.46846 * 304.90658 * 1 2 3 26 26 H 1.08997 * 109.46988 * 64.90292 * 1 2 3 27 27 H 1.09006 * 109.46863 * 64.90257 * 3 2 1 28 28 H 1.08996 * 109.47454 * 304.90060 * 3 2 1 29 29 H 1.09003 * 109.47514 * 303.68582 * 4 3 2 30 30 H 1.08999 * 109.47340 * 183.68554 * 4 3 2 31 31 H 1.09000 * 109.46557 * 186.04866 * 6 5 4 32 32 H 1.09000 * 109.47086 * 306.04387 * 6 5 4 33 33 H 0.96998 * 120.00120 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.47304 * 80.31299 * 15 5 4 35 35 H 1.09006 * 109.46909 * 320.32097 * 15 5 4 36 36 H 0.96995 * 120.00005 * 355.74566 * 18 16 15 37 37 H 1.08001 * 128.02212 * 359.97438 * 20 19 18 38 38 H 1.07998 * 126.69485 * 180.12668 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5306 1.1869 -0.1231 5 7 3.8713 0.5802 -1.4170 6 6 5.2279 0.0172 -1.3935 7 6 5.2744 -1.1414 -0.4310 8 1 4.3852 -1.4304 0.1096 9 6 6.4521 -1.8326 -0.2405 10 7 6.4926 -2.8440 0.5991 11 14 7.9903 -1.3323 -1.1750 12 1 8.7434 -0.3250 -0.3856 13 1 8.8445 -2.5265 -1.3976 14 1 7.6056 -0.7479 -2.4849 15 6 3.7232 1.5515 -2.5091 16 6 3.5850 0.8181 -3.8183 17 8 3.5228 -0.3930 -3.8313 18 7 3.5307 1.5081 -4.9748 19 6 3.4864 0.8274 -6.1917 20 6 3.3762 -0.5760 -6.3801 21 6 3.3720 -0.7252 -7.7243 22 8 3.4816 0.5048 -8.2469 23 7 3.5439 1.3528 -7.3872 24 1 -0.3632 -1.0239 0.0879 25 1 -0.3633 0.5881 0.8428 26 1 -0.3633 0.4359 -0.9306 27 1 1.7597 1.8147 0.9307 28 1 1.6209 1.8766 -0.8428 29 1 3.9128 0.5611 0.6834 30 1 3.9789 2.1783 -0.0574 31 1 5.4948 -0.3290 -2.3920 32 1 5.9339 0.7837 -1.0740 33 1 7.3212 -3.3300 0.7334 34 1 4.6019 2.1954 -2.5443 35 1 2.8344 2.1587 -2.3372 36 1 3.5183 2.4779 -4.9608 37 1 3.3091 -1.3453 -5.6251 38 1 3.2995 -1.6542 -8.2702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610391769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:50 Heat of formation + Delta-G solvation = 12.855838 kcal Electronic energy + Delta-G solvation = -22631.259613 eV Core-core repulsion = 19092.890869 eV Total energy + Delta-G solvation = -3538.368744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.81709 -39.89842 -37.78320 -36.24174 -35.21094 -32.61171 -32.35508 -31.40642 -29.80826 -28.71006 -26.25274 -25.21739 -23.51141 -22.22500 -22.04456 -20.88076 -19.79233 -18.24031 -17.55184 -17.11068 -16.80579 -16.42455 -16.01896 -15.81381 -15.08152 -14.76035 -14.37109 -14.24877 -13.77166 -13.58475 -13.39763 -13.07748 -12.51906 -12.37798 -12.15193 -11.98738 -11.47536 -11.40596 -11.28820 -11.27630 -10.70665 -10.63486 -10.07728 -9.84158 -9.68981 -9.65836 -9.27981 -9.13159 -8.76378 -8.51098 -7.48652 -5.97417 -3.93266 1.47230 2.15080 2.58699 3.02668 3.29921 3.34615 3.38681 3.41084 4.21999 4.37169 4.47061 4.55548 4.82377 5.11869 5.23696 5.24919 5.33766 5.40251 5.44306 5.50172 5.53565 5.66340 5.69332 5.72451 5.91500 5.98660 6.03072 6.47532 6.53652 6.78491 6.88924 7.17436 7.56441 7.67710 7.81125 7.96172 8.25112 8.32380 8.70971 9.16626 9.64012 11.15870 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.006051 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.049707 B = 4626.014109 C = 6293.053277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.069 3.931 4 C 0.059 3.941 5 N -0.498 5.498 6 C 0.164 3.836 7 C -0.499 4.499 8 H 0.087 0.913 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.870 3.130 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.039 3.961 16 C 0.516 3.484 17 O -0.466 6.466 18 N -0.644 5.644 19 C 0.253 3.747 20 C -0.224 4.224 21 C -0.056 4.056 22 O 0.088 5.912 23 N -0.401 5.401 24 H 0.081 0.919 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.108 0.892 30 H 0.040 0.960 31 H 0.033 0.967 32 H -0.018 1.018 33 H 0.262 0.738 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.414 0.586 37 H 0.192 0.808 38 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.178 10.809 -10.310 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.008 4.008 4 C -0.069 4.069 5 N -0.222 5.222 6 C 0.038 3.962 7 C -0.537 4.537 8 H 0.105 0.895 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.698 3.302 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.195 1.195 15 C -0.094 4.094 16 C 0.301 3.699 17 O -0.333 6.333 18 N -0.298 5.298 19 C 0.004 3.996 20 C -0.247 4.247 21 C -0.137 4.137 22 O 0.030 5.970 23 N -0.119 5.119 24 H 0.100 0.900 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.126 0.874 30 H 0.058 0.942 31 H 0.051 0.949 32 H -0.001 1.001 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.250 0.750 37 H 0.210 0.790 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -9.178 10.386 -10.715 17.519 hybrid contribution 1.191 0.862 0.095 1.473 sum -7.987 11.247 -10.620 17.409 Atomic orbital electron populations 1.22670 0.82808 1.02256 0.98779 1.88185 1.17784 1.26743 1.94944 1.22589 0.94748 0.85155 0.98304 1.22146 0.92772 0.98073 0.93935 1.61574 1.30593 1.29681 1.00397 1.20271 0.82663 0.94737 0.98517 1.21002 0.97843 1.12302 1.22602 0.89468 1.24856 0.98366 0.94910 0.95068 1.69888 1.27098 1.20761 1.36152 0.86949 0.83998 0.78283 0.80986 1.20460 1.21137 1.19465 1.21914 1.02368 0.94683 0.90389 1.21168 0.75772 0.88709 0.84230 1.90716 1.43318 1.13560 1.85722 1.42851 1.74382 1.10566 1.02025 1.20720 1.01166 0.90988 0.86774 1.23179 1.08741 0.95715 0.97063 1.25956 1.03077 0.90473 0.94210 1.84776 1.68535 1.12808 1.30912 1.74003 1.26386 1.14484 0.97010 0.90029 0.94990 0.94961 0.93769 0.94624 0.87361 0.94181 0.94891 1.00082 0.92789 0.92094 0.88439 0.75004 0.79048 0.76471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.62 10.63 -35.23 -0.37 -6.99 16 3 C 0.07 1.05 6.11 37.16 0.23 1.28 16 4 C 0.06 1.04 5.18 -3.82 -0.02 1.02 16 5 N -0.50 -10.11 3.88 -237.51 -0.92 -11.03 16 6 C 0.16 3.98 3.43 -4.98 -0.02 3.96 16 7 C -0.50 -14.40 8.78 -34.44 -0.30 -14.70 16 8 H 0.09 2.78 7.56 -52.48 -0.40 2.38 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 11 Si 0.87 21.98 27.47 -169.99 -4.67 17.31 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 14 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 15 C 0.04 0.59 5.30 -4.98 -0.03 0.57 16 16 C 0.52 8.68 7.37 -10.98 -0.08 8.60 16 17 O -0.47 -9.86 12.82 5.56 0.07 -9.79 16 18 N -0.64 -8.88 5.42 -11.43 -0.06 -8.95 16 19 C 0.25 3.81 8.17 -154.82 -1.26 2.55 16 20 C -0.22 -3.25 9.86 -39.20 -0.39 -3.64 16 21 C -0.06 -0.61 12.28 29.67 0.36 -0.24 16 22 O 0.09 1.12 11.19 17.05 0.19 1.31 16 23 N -0.40 -5.79 12.10 31.19 0.38 -5.41 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.47 6.70 -51.93 -0.35 0.12 16 29 H 0.11 2.28 6.58 -51.93 -0.34 1.94 16 30 H 0.04 0.59 7.99 -51.93 -0.42 0.18 16 31 H 0.03 0.86 5.97 -51.93 -0.31 0.55 16 32 H -0.02 -0.43 7.55 -51.93 -0.39 -0.82 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.06 0.82 7.99 -51.93 -0.41 0.41 16 35 H 0.10 1.16 6.48 -51.93 -0.34 0.82 16 36 H 0.41 4.23 8.82 -40.82 -0.36 3.87 16 37 H 0.19 3.11 6.25 -52.49 -0.33 2.78 16 38 H 0.22 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -36.30 322.00 -5.18 -41.47 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.92 Total: 1.60 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -0.49 Total: 2.88 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.17 Total: -52.64 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.11 Total: -15.47 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.30 -5.18 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.326 kcal (2) G-P(sol) polarization free energy of solvation -36.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds