Wall clock time and date at job start Tue Mar 31 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99717 * 2 1 4 4 C 1.52999 * 109.47159 * 184.89660 * 3 2 1 5 5 N 1.46906 * 109.46898 * 63.68247 * 4 3 2 6 6 C 1.46902 * 110.99879 * 200.07845 * 5 4 3 7 7 C 1.50696 * 109.47174 * 66.04966 * 6 5 4 8 8 H 1.08005 * 120.00109 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00387 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00388 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99712 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47139 * 89.99695 * 11 9 7 13 13 H 1.48501 * 109.47037 * 210.00255 * 11 9 7 14 14 H 1.48500 * 109.46954 * 329.99630 * 11 9 7 15 15 C 1.46900 * 110.99865 * 76.12816 * 5 4 3 16 16 C 1.50697 * 109.47164 * 200.32023 * 15 5 4 17 17 O 1.21273 * 120.00087 * 4.65024 * 16 15 5 18 18 N 1.34782 * 119.99879 * 184.65999 * 16 15 5 19 19 C 1.39504 * 119.99703 * 176.02212 * 18 16 15 20 20 C 1.42026 * 126.89288 * 5.82274 * 19 18 16 21 21 C 1.35247 * 103.95276 * 179.85431 * 20 19 18 22 22 O 1.34090 * 106.61221 * 0.40176 * 21 20 19 23 23 N 1.20914 * 111.74310 * 359.72651 * 22 21 20 24 24 H 1.08994 * 109.46601 * 184.90458 * 1 2 3 25 25 H 1.09002 * 109.46846 * 304.90658 * 1 2 3 26 26 H 1.08997 * 109.46988 * 64.90292 * 1 2 3 27 27 H 1.09006 * 109.46863 * 64.90257 * 3 2 1 28 28 H 1.08996 * 109.47454 * 304.90060 * 3 2 1 29 29 H 1.09003 * 109.47514 * 303.68582 * 4 3 2 30 30 H 1.08999 * 109.47340 * 183.68554 * 4 3 2 31 31 H 1.09000 * 109.46557 * 186.04866 * 6 5 4 32 32 H 1.09000 * 109.47086 * 306.04387 * 6 5 4 33 33 H 0.96998 * 120.00120 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.47304 * 80.31299 * 15 5 4 35 35 H 1.09006 * 109.46909 * 320.32097 * 15 5 4 36 36 H 0.96995 * 120.00005 * 355.74566 * 18 16 15 37 37 H 1.08001 * 128.02212 * 359.97438 * 20 19 18 38 38 H 1.07998 * 126.69485 * 180.12668 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5306 1.1869 -0.1231 5 7 3.8713 0.5802 -1.4170 6 6 5.2279 0.0172 -1.3935 7 6 5.2744 -1.1414 -0.4310 8 1 4.3852 -1.4304 0.1096 9 6 6.4521 -1.8326 -0.2405 10 7 6.4926 -2.8440 0.5991 11 14 7.9903 -1.3323 -1.1750 12 1 8.7434 -0.3250 -0.3856 13 1 8.8445 -2.5265 -1.3976 14 1 7.6056 -0.7479 -2.4849 15 6 3.7232 1.5515 -2.5091 16 6 3.5850 0.8181 -3.8183 17 8 3.5228 -0.3930 -3.8313 18 7 3.5307 1.5081 -4.9748 19 6 3.4864 0.8274 -6.1917 20 6 3.3762 -0.5760 -6.3801 21 6 3.3720 -0.7252 -7.7243 22 8 3.4816 0.5048 -8.2469 23 7 3.5439 1.3528 -7.3872 24 1 -0.3632 -1.0239 0.0879 25 1 -0.3633 0.5881 0.8428 26 1 -0.3633 0.4359 -0.9306 27 1 1.7597 1.8147 0.9307 28 1 1.6209 1.8766 -0.8428 29 1 3.9128 0.5611 0.6834 30 1 3.9789 2.1783 -0.0574 31 1 5.4948 -0.3290 -2.3920 32 1 5.9339 0.7837 -1.0740 33 1 7.3212 -3.3300 0.7334 34 1 4.6019 2.1954 -2.5443 35 1 2.8344 2.1587 -2.3372 36 1 3.5183 2.4779 -4.9608 37 1 3.3091 -1.3453 -5.6251 38 1 3.2995 -1.6542 -8.2702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610391769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:49 Heat of formation + Delta-G solvation = -16.505174 kcal Electronic energy + Delta-G solvation = -22632.532802 eV Core-core repulsion = 19092.890869 eV Total energy + Delta-G solvation = -3539.641933 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.86653 -41.18806 -39.09298 -37.63622 -36.48389 -34.64978 -33.58501 -32.47743 -31.22494 -30.36376 -27.56409 -26.64931 -24.64641 -23.79839 -23.29269 -22.15520 -21.21655 -19.28047 -18.99400 -18.60093 -18.22894 -17.63201 -17.23505 -17.21966 -16.35082 -16.16779 -16.05387 -15.74352 -15.05269 -14.94305 -14.72821 -14.42075 -14.11482 -14.00861 -13.46394 -13.33812 -12.89928 -12.68415 -12.62121 -12.52009 -12.48449 -12.19897 -11.85636 -11.58093 -11.40554 -10.97306 -10.75922 -10.68555 -10.40423 -9.88274 -8.97706 -8.24331 -6.25229 0.47084 1.03163 1.29392 1.34044 1.43265 1.46782 1.84019 2.34371 2.43548 3.04180 3.09612 3.17894 3.40259 3.62998 4.04948 4.11285 4.26681 4.28272 4.31926 4.38872 4.52470 4.59872 4.60901 4.67855 4.69285 4.84632 4.89379 4.97296 5.02293 5.19815 5.34298 5.59672 5.94127 6.14948 6.32753 6.55834 6.66907 6.82363 7.05790 7.30471 7.36089 8.93071 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.006051 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.049707 B = 4626.014109 C = 6293.053277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.411 6.411 3 C 0.071 3.929 4 C 0.058 3.942 5 N -0.526 5.526 6 C 0.179 3.821 7 C -0.502 4.502 8 H 0.037 0.963 9 C 0.006 3.994 10 N -0.950 5.950 11 Si 0.944 3.056 12 H -0.258 1.258 13 H -0.284 1.284 14 H -0.261 1.261 15 C 0.040 3.960 16 C 0.515 3.485 17 O -0.520 6.520 18 N -0.628 5.628 19 C 0.233 3.767 20 C -0.266 4.266 21 C -0.016 4.016 22 O 0.093 5.907 23 N -0.410 5.410 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.016 0.984 32 H -0.005 1.005 33 H 0.265 0.735 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.431 0.569 37 H 0.169 0.831 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.161 13.474 -12.319 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.006 4.006 4 C -0.069 4.069 5 N -0.250 5.250 6 C 0.052 3.948 7 C -0.540 4.540 8 H 0.055 0.945 9 C -0.191 4.191 10 N -0.591 5.591 11 Si 0.768 3.232 12 H -0.183 1.183 13 H -0.210 1.210 14 H -0.185 1.185 15 C -0.091 4.091 16 C 0.302 3.698 17 O -0.391 6.391 18 N -0.283 5.283 19 C -0.017 4.017 20 C -0.289 4.289 21 C -0.097 4.097 22 O 0.034 5.966 23 N -0.127 5.127 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.034 0.966 32 H 0.013 0.987 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.157 0.843 36 H 0.271 0.729 37 H 0.187 0.813 38 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -9.187 13.135 -12.737 20.474 hybrid contribution 1.044 -0.005 0.685 1.249 sum -8.143 13.131 -12.052 19.595 Atomic orbital electron populations 1.22816 0.80635 1.02801 1.00513 1.88124 1.20442 1.29070 1.95378 1.22690 0.92644 0.84435 1.00813 1.22163 0.95005 0.98523 0.91231 1.61291 1.28013 1.32817 1.02909 1.19891 0.85639 0.93493 0.95755 1.21220 0.96090 1.13871 1.22822 0.94496 1.25799 1.02274 0.94865 0.96127 1.70060 1.28282 1.22500 1.38290 0.85774 0.79283 0.78339 0.79810 1.18306 1.20970 1.18539 1.22066 1.05538 0.93802 0.87736 1.21508 0.74762 0.88188 0.85326 1.90717 1.46026 1.15840 1.86509 1.42587 1.73262 1.11326 1.01134 1.20981 1.01926 0.91476 0.87281 1.23125 1.11962 0.95431 0.98420 1.26700 0.98910 0.91000 0.93077 1.84752 1.67928 1.13360 1.30522 1.74011 1.26846 1.15124 0.96755 0.90429 0.92543 0.93597 0.91128 0.91783 0.92095 0.90469 0.96570 0.98729 0.92641 0.89143 0.84278 0.72940 0.81330 0.71598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.41 -15.24 10.63 -148.98 -1.58 -16.82 16 3 C 0.07 2.02 6.11 71.98 0.44 2.46 16 4 C 0.06 2.01 5.18 86.30 0.45 2.46 16 5 N -0.53 -21.07 3.88 -905.35 -3.51 -24.57 16 6 C 0.18 8.74 3.43 85.56 0.29 9.03 16 7 C -0.50 -30.22 8.78 25.60 0.22 -30.00 16 8 H 0.04 2.53 7.56 -2.91 -0.02 2.51 16 9 C 0.01 0.35 5.47 84.65 0.46 0.82 16 10 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 11 Si 0.94 45.92 27.47 68.60 1.88 47.81 16 12 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 13 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.26 -12.24 6.54 99.48 0.65 -11.59 16 15 C 0.04 1.11 5.30 85.56 0.45 1.56 16 16 C 0.52 16.80 7.37 87.66 0.65 17.45 16 17 O -0.52 -22.47 12.82 -3.01 -0.04 -22.51 16 18 N -0.63 -16.29 5.42 -309.52 -1.68 -17.97 16 19 C 0.23 6.73 8.17 134.11 1.10 7.83 16 20 C -0.27 -7.58 9.86 22.52 0.22 -7.36 16 21 C -0.02 -0.30 12.28 67.13 0.82 0.52 16 22 O 0.09 2.12 11.19 71.17 0.80 2.91 16 23 N -0.41 -11.06 12.10 -56.32 -0.68 -11.74 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.06 1.44 6.70 -2.39 -0.02 1.42 16 29 H 0.06 2.67 6.58 -2.39 -0.02 2.66 16 30 H 0.08 2.04 7.99 -2.39 -0.02 2.02 16 31 H 0.02 0.85 5.97 -2.39 -0.01 0.83 16 32 H 0.00 -0.22 7.55 -2.39 -0.02 -0.24 16 33 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 34 H 0.09 2.07 7.99 -2.39 -0.02 2.05 16 35 H 0.14 2.70 6.48 -2.38 -0.02 2.68 16 36 H 0.43 7.67 8.82 -92.71 -0.82 6.85 16 37 H 0.17 5.71 6.25 -2.91 -0.02 5.69 16 38 H 0.27 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -85.45 322.00 2.06 -83.38 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.22 Total: 14.09 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 6.36 Total: 6.76 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -5.57 Total: -115.62 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.83 Total: -36.42 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.88 Total: 47.81 kcal Total: -85.45 2.06 -83.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.879 kcal (2) G-P(sol) polarization free energy of solvation -85.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds