Wall clock time and date at job start Tue Mar 31 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86804 * 119.99864 * 2 1 4 4 H 1.48498 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46713 * 299.99612 * 3 2 1 6 6 H 1.48494 * 109.47200 * 59.99341 * 3 2 1 7 7 C 1.38949 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00262 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99696 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99871 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99933 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99962 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.46881 * 180.02562 * 12 10 9 14 14 C 1.34800 * 116.99632 * 180.02562 * 13 12 10 15 15 O 1.21530 * 120.00285 * 359.97438 * 14 13 12 16 16 C 1.46957 * 119.99673 * 179.97438 * 14 13 12 17 17 C 1.33083 * 119.99751 * 186.71901 * 16 14 13 18 18 C 1.50704 * 120.00082 * 16.76325 * 17 16 14 19 19 C 1.53181 * 109.54215 * 253.15017 * 18 17 16 20 20 C 1.53106 * 109.15544 * 183.24101 * 19 18 17 21 21 O 1.42904 * 109.48738 * 57.47275 * 20 19 18 22 22 C 1.42906 * 114.09794 * 298.89207 * 21 20 19 23 23 C 1.53088 * 109.41939 * 61.15359 * 22 21 20 24 24 H 0.96996 * 120.00062 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00227 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46935 * 60.00086 * 12 10 9 27 27 H 1.08998 * 109.47020 * 300.00061 * 12 10 9 28 28 H 1.07997 * 119.99675 * 6.71961 * 16 14 13 29 29 H 1.07993 * 119.99791 * 196.75982 * 17 16 14 30 30 H 1.09005 * 109.54167 * 13.32260 * 18 17 16 31 31 H 1.08997 * 109.51762 * 303.05725 * 19 18 17 32 32 H 1.08999 * 109.52371 * 63.24591 * 19 18 17 33 33 H 1.09000 * 109.40620 * 297.49426 * 20 19 18 34 34 H 1.08995 * 109.48044 * 177.50184 * 20 19 18 35 35 H 1.09003 * 109.47965 * 301.17066 * 22 21 20 36 36 H 1.09001 * 109.47750 * 181.14130 * 22 21 20 37 37 H 1.08997 * 109.52483 * 182.48134 * 23 22 21 38 38 H 1.09008 * 109.57351 * 62.32767 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0011 13 8 2.1875 -5.9665 0.0016 14 6 1.6723 -7.2122 0.0016 15 8 0.4675 -7.3715 0.0017 16 6 2.5675 -8.3776 0.0016 17 6 2.0651 -9.6025 -0.1333 18 6 0.6642 -9.7890 -0.6565 19 6 -0.2597 -10.2084 0.4911 20 6 -1.6617 -10.4739 -0.0640 21 8 -1.5906 -11.4780 -1.0784 22 6 -0.7786 -11.1195 -2.1984 23 6 0.6592 -10.8821 -1.7295 24 1 -0.4850 0.8400 -0.0004 25 1 0.3535 -2.3906 0.0005 26 1 0.6169 -4.9209 -0.8887 27 1 0.6176 -4.9205 0.8913 28 1 3.6331 -8.2399 0.1109 29 1 2.6614 -10.4629 0.1322 30 1 0.3084 -8.8532 -1.0876 31 1 0.1250 -11.1166 0.9550 32 1 -0.3050 -9.4107 1.2324 33 1 -2.0625 -9.5543 -0.4905 34 1 -2.3126 -10.8155 0.7407 35 1 -1.1679 -10.2084 -2.6527 36 1 -0.7935 -11.9263 -2.9312 37 1 1.2705 -10.5658 -2.5747 38 1 1.0641 -11.8041 -1.3120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732689074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:31 Heat of formation + Delta-G solvation = -153.205338 kcal Electronic energy + Delta-G solvation = -21730.632650 eV Core-core repulsion = 18152.770202 eV Total energy + Delta-G solvation = -3577.862448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.50572 -39.41766 -38.16691 -36.47859 -35.05115 -34.00531 -31.88774 -31.37681 -31.28604 -28.50913 -25.79197 -24.59820 -23.74450 -22.81544 -20.53651 -19.70139 -19.50393 -18.09080 -17.59375 -16.57373 -16.29829 -16.17677 -15.97819 -15.28270 -15.05563 -14.69413 -14.52910 -14.12296 -13.97104 -13.86952 -13.61507 -12.95569 -12.64462 -12.38028 -12.34140 -11.91907 -11.65467 -11.60485 -11.50965 -11.16935 -11.15212 -10.54018 -10.39997 -10.39728 -10.31184 -9.92814 -9.78771 -9.62397 -9.44762 -8.52731 -8.09020 -6.50856 -3.92826 0.97759 2.80634 2.93602 3.11163 3.23324 3.31057 3.67988 3.73253 4.11307 4.36994 4.54291 4.64232 4.69417 4.81347 5.02121 5.03919 5.13718 5.14299 5.22105 5.33258 5.38475 5.47860 5.52250 5.62019 5.64588 5.69199 5.75726 5.88849 5.98187 6.02286 6.05639 6.28832 6.69964 6.99150 7.47279 7.85570 7.96695 8.47942 9.06562 9.38704 9.88708 10.66485 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.002833 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.730409 B = 9881.473038 C =10345.533746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.322 6.322 14 C 0.487 3.513 15 O -0.511 6.511 16 C -0.189 4.189 17 C -0.049 4.049 18 C -0.091 4.091 19 C -0.135 4.135 20 C 0.062 3.938 21 O -0.387 6.387 22 C 0.062 3.938 23 C -0.149 4.149 24 H 0.273 0.727 25 H 0.395 0.605 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 -20.753 -1.506 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.237 6.237 14 C 0.334 3.666 15 O -0.403 6.403 16 C -0.208 4.208 17 C -0.067 4.067 18 C -0.109 4.109 19 C -0.173 4.173 20 C -0.015 4.015 21 O -0.306 6.306 22 C -0.015 4.015 23 C -0.187 4.187 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.162 0.838 29 H 0.152 0.848 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.726 -20.754 -1.490 20.879 hybrid contribution -0.096 1.202 0.034 1.206 sum -1.822 -19.552 -1.455 19.691 Atomic orbital electron populations 1.69623 1.06000 1.28377 1.49802 1.25315 0.95689 0.99868 0.96915 0.85744 0.79720 0.80749 0.77810 1.19083 1.20611 1.20614 1.19779 0.93508 0.81758 1.48042 0.87573 1.41715 1.09359 1.04108 1.63891 1.19346 0.88345 0.84115 0.85908 1.90564 1.13445 1.86804 1.55175 1.22722 0.90850 0.84638 1.03391 1.86665 1.39951 1.14123 1.82925 1.21682 0.87572 0.84182 0.73155 1.90750 1.16491 1.86611 1.46462 1.22050 1.00188 0.89984 1.08560 1.23797 0.96754 0.96366 0.89788 1.20951 0.92624 1.01164 0.96124 1.22023 0.95441 1.01785 0.98047 1.22578 0.96361 0.91792 0.90767 1.87906 1.69422 1.42713 1.30516 1.22537 0.89598 1.00851 0.88503 1.22258 0.98118 0.99171 0.99164 0.91681 0.77173 0.89614 0.89574 0.83807 0.84794 0.86963 0.91568 0.90082 0.92706 0.88926 0.93022 0.88897 0.90758 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 2 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16 3 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 8 H 0.11 3.07 7.16 -52.49 -0.38 2.70 16 9 N -0.55 -14.02 5.29 -10.96 -0.06 -14.08 16 10 C 0.44 10.62 7.86 -10.98 -0.09 10.53 16 11 O -0.58 -16.15 16.08 -14.12 -0.23 -16.38 16 12 C 0.06 1.17 5.96 36.01 0.21 1.39 16 13 O -0.32 -6.04 9.77 -47.45 -0.46 -6.50 16 14 C 0.49 7.50 7.66 34.26 0.26 7.76 16 15 O -0.51 -8.14 12.41 -19.29 -0.24 -8.38 16 16 C -0.19 -2.16 10.12 -37.84 -0.38 -2.54 16 17 C -0.05 -0.45 8.82 -36.10 -0.32 -0.77 16 18 C -0.09 -0.91 1.71 -91.59 -0.16 -1.07 16 19 C -0.14 -1.34 5.19 -26.58 -0.14 -1.47 16 20 C 0.06 0.61 6.84 37.21 0.25 0.87 16 21 O -0.39 -4.19 10.77 -35.23 -0.38 -4.57 16 22 C 0.06 0.54 6.84 37.20 0.25 0.80 16 23 C -0.15 -1.23 5.41 -26.60 -0.14 -1.38 16 24 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 26 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.11 1.42 5.31 -51.93 -0.28 1.14 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.89 7.50 -51.93 -0.39 0.51 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -32.26 325.39 -6.39 -38.65 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.15 Total: 7.84 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.48 Total: 6.18 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.67 Total: -37.41 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.31 Total: -35.83 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.26 -6.39 -38.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732689074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.555 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds