Wall clock time and date at job start Tue Mar 31 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86804 * 119.99864 * 2 1 4 4 H 1.48498 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46713 * 299.99612 * 3 2 1 6 6 H 1.48494 * 109.47200 * 59.99341 * 3 2 1 7 7 C 1.38949 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00262 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99696 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99871 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99933 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99962 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.46881 * 180.02562 * 12 10 9 14 14 C 1.34800 * 116.99632 * 180.02562 * 13 12 10 15 15 O 1.21530 * 120.00285 * 359.97438 * 14 13 12 16 16 C 1.46957 * 119.99673 * 179.97438 * 14 13 12 17 17 C 1.33083 * 119.99751 * 186.71901 * 16 14 13 18 18 C 1.50704 * 120.00082 * 16.76325 * 17 16 14 19 19 C 1.53181 * 109.54215 * 253.15017 * 18 17 16 20 20 C 1.53106 * 109.15544 * 183.24101 * 19 18 17 21 21 O 1.42904 * 109.48738 * 57.47275 * 20 19 18 22 22 C 1.42906 * 114.09794 * 298.89207 * 21 20 19 23 23 C 1.53088 * 109.41939 * 61.15359 * 22 21 20 24 24 H 0.96996 * 120.00062 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00227 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46935 * 60.00086 * 12 10 9 27 27 H 1.08998 * 109.47020 * 300.00061 * 12 10 9 28 28 H 1.07997 * 119.99675 * 6.71961 * 16 14 13 29 29 H 1.07993 * 119.99791 * 196.75982 * 17 16 14 30 30 H 1.09005 * 109.54167 * 13.32260 * 18 17 16 31 31 H 1.08997 * 109.51762 * 303.05725 * 19 18 17 32 32 H 1.08999 * 109.52371 * 63.24591 * 19 18 17 33 33 H 1.09000 * 109.40620 * 297.49426 * 20 19 18 34 34 H 1.08995 * 109.48044 * 177.50184 * 20 19 18 35 35 H 1.09003 * 109.47965 * 301.17066 * 22 21 20 36 36 H 1.09001 * 109.47750 * 181.14130 * 22 21 20 37 37 H 1.08997 * 109.52483 * 182.48134 * 23 22 21 38 38 H 1.09008 * 109.57351 * 62.32767 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0011 13 8 2.1875 -5.9665 0.0016 14 6 1.6723 -7.2122 0.0016 15 8 0.4675 -7.3715 0.0017 16 6 2.5675 -8.3776 0.0016 17 6 2.0651 -9.6025 -0.1333 18 6 0.6642 -9.7890 -0.6565 19 6 -0.2597 -10.2084 0.4911 20 6 -1.6617 -10.4739 -0.0640 21 8 -1.5906 -11.4780 -1.0784 22 6 -0.7786 -11.1195 -2.1984 23 6 0.6592 -10.8821 -1.7295 24 1 -0.4850 0.8400 -0.0004 25 1 0.3535 -2.3906 0.0005 26 1 0.6169 -4.9209 -0.8887 27 1 0.6176 -4.9205 0.8913 28 1 3.6331 -8.2399 0.1109 29 1 2.6614 -10.4629 0.1322 30 1 0.3084 -8.8532 -1.0876 31 1 0.1250 -11.1166 0.9550 32 1 -0.3050 -9.4107 1.2324 33 1 -2.0625 -9.5543 -0.4905 34 1 -2.3126 -10.8155 0.7407 35 1 -1.1679 -10.2084 -2.6527 36 1 -0.7935 -11.9263 -2.9312 37 1 1.2705 -10.5658 -2.5747 38 1 1.0641 -11.8041 -1.3120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732689074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:31 Heat of formation + Delta-G solvation = -174.208747 kcal Electronic energy + Delta-G solvation = -21731.543427 eV Core-core repulsion = 18152.770202 eV Total energy + Delta-G solvation = -3578.773224 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.01 seconds Orbital eigenvalues (eV) -41.69467 -40.40371 -39.91748 -37.75921 -36.09856 -35.95193 -33.44288 -32.71834 -32.00825 -30.11455 -27.01770 -26.19631 -24.47369 -23.90070 -21.46721 -21.28592 -20.71494 -20.09330 -18.77132 -17.81575 -17.67256 -17.43982 -16.92976 -16.78297 -16.19026 -15.98585 -15.75043 -15.57867 -15.41477 -14.84860 -14.66510 -14.26137 -13.97161 -13.67358 -13.57605 -13.30407 -13.03044 -12.95913 -12.53250 -12.47680 -12.26026 -12.11806 -11.90118 -11.83043 -11.60298 -11.32164 -10.92837 -10.57688 -10.53494 -10.26645 -10.13758 -8.54298 -6.05110 0.05939 1.33307 1.39917 1.49809 1.60840 1.82640 1.88966 2.29580 2.95998 3.07127 3.11157 3.57786 3.76228 3.84390 3.91702 4.07473 4.10334 4.14593 4.20193 4.33443 4.35611 4.47770 4.58693 4.68781 4.79398 4.87213 4.94990 4.99741 5.11815 5.19872 5.22977 5.30197 5.35512 5.65836 5.87465 6.24862 6.44336 6.70084 7.01125 7.37616 7.91299 8.63000 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.002833 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.730409 B = 9881.473038 C =10345.533746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.084 0.916 9 N -0.558 5.558 10 C 0.435 3.565 11 O -0.619 6.619 12 C 0.074 3.926 13 O -0.347 6.347 14 C 0.481 3.519 15 O -0.523 6.523 16 C -0.213 4.213 17 C -0.015 4.015 18 C -0.099 4.099 19 C -0.131 4.131 20 C 0.060 3.940 21 O -0.400 6.400 22 C 0.055 3.945 23 C -0.142 4.142 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.159 0.841 29 H 0.176 0.824 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.105 0.895 35 H 0.043 0.957 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 -22.156 -1.562 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.102 0.898 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.506 6.506 12 C -0.003 4.003 13 O -0.262 6.262 14 C 0.330 3.670 15 O -0.415 6.415 16 C -0.232 4.232 17 C -0.033 4.033 18 C -0.117 4.117 19 C -0.169 4.169 20 C -0.016 4.016 21 O -0.319 6.319 22 C -0.022 4.022 23 C -0.180 4.180 24 H 0.091 0.909 25 H 0.234 0.766 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.177 0.823 29 H 0.193 0.807 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.646 -22.175 -1.549 22.290 hybrid contribution -0.216 1.524 0.025 1.540 sum -1.862 -20.651 -1.524 20.790 Atomic orbital electron populations 1.69678 1.06956 1.29706 1.49188 1.26139 0.96596 1.02600 0.95603 0.84793 0.78056 0.76516 0.78496 1.19577 1.19370 1.19382 1.19760 0.92926 0.83401 1.50659 0.89838 1.41753 1.09544 1.04207 1.64014 1.20160 0.88087 0.85475 0.84078 1.90523 1.15545 1.87741 1.56799 1.22445 0.90158 0.82614 1.05100 1.86665 1.40524 1.15216 1.83840 1.22449 0.88226 0.83767 0.72578 1.90755 1.17114 1.86452 1.47206 1.22119 1.00424 0.88954 1.11715 1.24183 0.96201 0.96696 0.86180 1.20969 0.93206 1.00688 0.96797 1.21966 0.95436 1.01873 0.97576 1.22605 0.96735 0.91264 0.91015 1.87889 1.70012 1.42964 1.31049 1.22716 0.89765 1.01315 0.88365 1.22219 0.97887 0.99022 0.98847 0.90929 0.76566 0.87778 0.87748 0.82318 0.80689 0.89792 0.89911 0.91627 0.94120 0.87679 0.93892 0.86926 0.89763 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.74 13.05 21.66 0.28 -48.45 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 1.00 42.16 29.55 68.60 2.03 44.19 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 7 C -0.34 -19.17 9.68 84.04 0.81 -18.36 16 8 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.96 5.29 -306.98 -1.62 -30.58 16 10 C 0.44 21.65 7.86 87.66 0.69 22.34 16 11 O -0.62 -35.92 16.08 15.72 0.25 -35.67 16 12 C 0.07 2.85 5.96 71.24 0.42 3.27 16 13 O -0.35 -13.12 9.77 -50.73 -0.50 -13.62 16 14 C 0.48 14.68 7.66 70.11 0.54 15.22 16 15 O -0.52 -16.64 12.41 19.74 0.25 -16.39 16 16 C -0.21 -4.55 10.12 23.40 0.24 -4.31 16 17 C -0.01 -0.23 8.82 24.53 0.22 -0.01 16 18 C -0.10 -1.80 1.71 -11.42 -0.02 -1.82 16 19 C -0.13 -2.37 5.19 30.69 0.16 -2.21 16 20 C 0.06 1.14 6.84 72.02 0.49 1.64 16 21 O -0.40 -8.06 10.77 -148.98 -1.60 -9.66 16 22 C 0.05 0.87 6.84 72.01 0.49 1.36 16 23 C -0.14 -1.96 5.41 30.68 0.17 -1.79 16 24 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 25 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 26 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 27 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 28 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.08 2.08 5.31 -2.38 -0.01 2.06 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.40 7.50 -2.39 -0.02 1.38 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -70.71 325.39 4.11 -66.60 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.34 Total: 28.25 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 4.68 Total: 15.34 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -1.34 Total: -79.03 kcal Atomic # 8 Polarization: -73.74 SS G_CDS: -1.60 Total: -75.34 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -70.71 4.11 -66.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732689074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.609 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.01 seconds