Wall clock time and date at job start Tue Mar 31 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47481 * 2 1 4 4 O 1.42897 * 109.47250 * 119.99974 * 2 1 3 5 5 C 1.34929 * 116.99915 * 269.99986 * 4 2 1 6 6 O 1.21670 * 120.00130 * 359.97438 * 5 4 2 7 7 C 1.41561 * 120.00060 * 179.97438 * 5 4 2 8 8 C 1.33870 * 125.97555 * 180.02562 * 7 5 4 9 9 O 1.33753 * 114.14263 * 180.02562 * 8 7 5 10 10 C 1.45607 * 110.37660 * 359.97438 * 9 8 7 11 11 C 1.51452 * 125.96961 * 359.71954 * 7 5 4 12 12 C 1.50699 * 109.47156 * 240.00191 * 2 1 3 13 13 O 1.21287 * 119.99833 * 256.02987 * 12 2 1 14 14 N 1.34774 * 120.00278 * 76.02950 * 12 2 1 15 15 C 1.46496 * 119.99788 * 5.36201 * 14 12 2 16 16 C 1.46507 * 119.99946 * 185.36511 * 14 12 2 17 17 C 1.50700 * 109.46726 * 89.99860 * 16 14 12 18 18 H 1.07997 * 120.00428 * 359.97438 * 17 16 14 19 19 C 1.37878 * 119.99561 * 179.97438 * 17 16 14 20 20 N 1.31517 * 120.00044 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00043 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46729 * 90.00077 * 21 19 17 23 23 H 1.48501 * 109.46901 * 210.00132 * 21 19 17 24 24 H 1.48498 * 109.46946 * 329.99979 * 21 19 17 25 25 H 1.08995 * 109.47308 * 186.13776 * 1 2 3 26 26 H 1.09001 * 109.47543 * 306.13811 * 1 2 3 27 27 H 1.08997 * 109.47448 * 66.13521 * 1 2 3 28 28 H 1.08001 * 122.92866 * 359.97438 * 8 7 5 29 29 H 1.09005 * 110.49380 * 118.67150 * 10 9 8 30 30 H 1.08999 * 110.49977 * 241.20062 * 10 9 8 31 31 H 1.08998 * 110.66299 * 298.44298 * 11 7 5 32 32 H 1.08996 * 110.66361 * 61.55372 * 11 7 5 33 33 H 1.09004 * 109.47061 * 84.82748 * 15 14 12 34 34 H 1.08998 * 109.47093 * 204.82144 * 15 14 12 35 35 H 1.08993 * 109.47702 * 324.82393 * 15 14 12 36 36 H 1.08997 * 109.46930 * 210.00071 * 16 14 12 37 37 H 1.08998 * 109.47004 * 329.99798 * 16 14 12 38 38 H 0.97001 * 119.99846 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2105 0.0788 2.2680 6 8 1.9900 1.2750 2.2370 7 6 2.6812 -0.5235 3.4595 8 6 2.9236 0.1056 4.6160 9 8 3.3643 -0.6953 5.5925 10 6 3.4615 -2.0681 5.1171 11 6 2.9925 -1.9933 3.6504 12 6 2.0323 -0.7104 -1.2305 13 8 2.4735 -1.8367 -1.1428 14 7 1.9913 -0.0941 -2.4284 15 6 1.5690 1.3058 -2.5178 16 6 2.3689 -0.8243 -3.6411 17 6 1.1506 -1.4918 -4.2253 18 1 0.1911 -1.3834 -3.7415 19 6 1.2609 -2.2409 -5.3775 20 7 0.1977 -2.8231 -5.8877 21 14 2.9206 -2.4290 -6.2140 22 1 3.6176 -3.6213 -5.6682 23 1 2.7217 -2.5978 -7.6759 24 1 3.7416 -1.2174 -5.9628 25 1 -0.3633 -1.0217 0.1099 26 1 -0.3634 0.6060 0.8299 27 1 -0.3634 0.4158 -0.9398 28 1 2.7769 1.1673 4.7489 29 1 4.4916 -2.4199 5.1748 30 1 2.8042 -2.7191 5.6935 31 1 2.0988 -2.5986 3.4988 32 1 3.7900 -2.3082 2.9774 33 1 2.4230 1.9558 -2.3267 34 1 1.1775 1.5043 -3.5155 35 1 0.7926 1.4992 -1.7777 36 1 2.7862 -0.1285 -4.3689 37 1 3.1136 -1.5804 -3.3928 38 1 0.2754 -3.3504 -6.6981 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734189666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:43 Heat of formation + Delta-G solvation = -126.655178 kcal Electronic energy + Delta-G solvation = -22413.177879 eV Core-core repulsion = 18836.466732 eV Total energy + Delta-G solvation = -3576.711147 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41019 -40.39953 -38.91353 -36.45497 -34.97976 -33.37943 -32.68518 -31.49802 -30.22241 -28.39084 -26.18269 -25.21538 -23.73876 -23.08505 -21.84323 -20.12107 -18.84239 -18.37018 -17.01872 -16.98548 -16.84863 -16.49024 -15.87615 -15.62998 -15.34733 -14.67866 -14.34018 -13.82978 -13.59015 -13.28165 -13.11030 -12.92288 -12.43462 -12.37262 -12.27550 -12.24130 -12.23408 -11.96774 -11.84277 -11.49173 -11.39122 -10.95353 -10.65796 -10.62003 -10.49031 -10.17216 -9.56999 -8.99535 -8.81384 -8.61335 -7.77706 -6.11349 -4.10788 0.88622 2.59290 2.86897 2.91130 3.18324 3.28339 3.34366 3.36308 3.86528 4.20837 4.37685 4.41199 4.62545 4.76141 4.80464 5.00390 5.13318 5.14869 5.18744 5.22476 5.51742 5.55149 5.64961 5.73478 5.74682 5.80000 5.81340 6.07791 6.27196 6.40995 6.54068 6.66451 6.90558 7.25388 7.56791 7.79761 8.12750 8.43009 8.82933 8.92153 9.48450 11.01818 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.003700 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.313479 B = 7565.683537 C = 7993.982120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.072 3.928 3 H 0.101 0.899 4 O -0.318 6.318 5 C 0.539 3.461 6 O -0.528 6.528 7 C -0.316 4.316 8 C 0.171 3.829 9 O -0.297 6.297 10 C 0.042 3.958 11 C -0.102 4.102 12 C 0.513 3.487 13 O -0.521 6.521 14 N -0.593 5.593 15 C 0.074 3.926 16 C 0.216 3.784 17 C -0.532 4.532 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.266 1.266 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.198 0.802 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.851 7.031 19.906 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 H 0.119 0.881 4 O -0.233 6.233 5 C 0.388 3.612 6 O -0.421 6.421 7 C -0.319 4.319 8 C 0.103 3.897 9 O -0.206 6.206 10 C -0.032 4.032 11 C -0.140 4.140 12 C 0.298 3.702 13 O -0.397 6.397 14 N -0.326 5.326 15 C -0.070 4.070 16 C 0.096 3.904 17 C -0.571 4.571 18 H 0.094 0.906 19 C -0.129 4.129 20 N -0.534 5.534 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.190 1.190 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.215 0.785 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.036 6.643 19.981 21.650 hybrid contribution 0.548 -0.134 -0.904 1.066 sum 5.584 6.509 19.076 20.915 Atomic orbital electron populations 1.22191 0.92152 1.04175 1.03784 1.22190 0.96119 0.97458 0.82953 0.88101 1.86314 1.76742 1.40898 1.19375 1.18642 0.74422 0.84679 0.83484 1.90862 1.50717 1.15737 1.84751 1.19883 1.20168 0.97462 0.94391 1.23545 0.84293 0.96549 0.85351 1.86732 1.77377 1.20169 1.36339 1.24260 1.03514 0.80650 0.94789 1.21617 1.03557 0.93368 0.95417 1.19829 0.79833 0.86722 0.83823 1.90682 1.45197 1.18379 1.85414 1.47738 1.65687 1.12037 1.07126 1.21857 0.99149 0.82118 1.03879 1.19731 0.97267 0.92385 0.81038 1.21328 0.95074 1.31152 1.09517 0.90638 1.24852 0.96590 0.94764 0.96737 1.69895 1.28827 1.33031 1.21692 0.86846 0.84591 0.79419 0.78825 1.19843 1.21016 1.19024 0.90658 0.91251 0.89542 0.78527 0.88409 0.88451 0.88856 0.88776 0.93325 0.89926 0.91855 0.94876 0.94318 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.17 37.15 0.34 -2.15 16 2 C 0.07 1.23 2.09 -27.89 -0.06 1.18 16 3 H 0.10 1.58 6.27 -51.93 -0.33 1.25 16 4 O -0.32 -5.48 9.13 -47.73 -0.44 -5.91 16 5 C 0.54 8.00 7.68 32.00 0.25 8.25 16 6 O -0.53 -8.36 15.95 -19.40 -0.31 -8.67 16 7 C -0.32 -3.66 6.06 -104.52 -0.63 -4.29 16 8 C 0.17 1.53 11.26 29.20 0.33 1.86 16 9 O -0.30 -2.51 11.02 -13.31 -0.15 -2.66 16 10 C 0.04 0.28 8.23 37.77 0.31 0.59 16 11 C -0.10 -0.98 6.80 -26.90 -0.18 -1.16 16 12 C 0.51 11.01 6.95 -10.99 -0.08 10.93 16 13 O -0.52 -13.33 16.13 -13.83 -0.22 -13.55 16 14 N -0.59 -12.43 2.86 -182.95 -0.52 -12.95 16 15 C 0.07 1.15 9.79 59.84 0.59 1.73 16 16 C 0.22 5.30 4.25 -5.19 -0.02 5.28 16 17 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 18 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 20 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 21 Si 0.88 21.47 27.47 -169.99 -4.67 16.81 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.25 6.33 -51.93 -0.33 0.92 16 28 H 0.20 1.33 7.99 -52.49 -0.42 0.91 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 35 H 0.06 0.85 4.92 -51.93 -0.26 0.59 16 36 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 37 H 0.04 1.02 6.78 -51.93 -0.35 0.66 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -35.91 325.77 -5.24 -41.15 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.02 Total: -1.14 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 0.40 Total: 8.70 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.25 Total: -39.64 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.12 Total: -30.79 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.91 -5.24 -41.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734189666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.502 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds