Wall clock time and date at job start Tue Mar 31 2020 02:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47481 * 2 1 4 4 O 1.42897 * 109.47250 * 119.99974 * 2 1 3 5 5 C 1.34929 * 116.99915 * 269.99986 * 4 2 1 6 6 O 1.21670 * 120.00130 * 359.97438 * 5 4 2 7 7 C 1.41561 * 120.00060 * 179.97438 * 5 4 2 8 8 C 1.33870 * 125.97555 * 180.02562 * 7 5 4 9 9 O 1.33753 * 114.14263 * 180.02562 * 8 7 5 10 10 C 1.45607 * 110.37660 * 359.97438 * 9 8 7 11 11 C 1.51452 * 125.96961 * 359.71954 * 7 5 4 12 12 C 1.50699 * 109.47156 * 240.00191 * 2 1 3 13 13 O 1.21287 * 119.99833 * 256.02987 * 12 2 1 14 14 N 1.34774 * 120.00278 * 76.02950 * 12 2 1 15 15 C 1.46496 * 119.99788 * 5.36201 * 14 12 2 16 16 C 1.46507 * 119.99946 * 185.36511 * 14 12 2 17 17 C 1.50700 * 109.46726 * 89.99860 * 16 14 12 18 18 H 1.07997 * 120.00428 * 359.97438 * 17 16 14 19 19 C 1.37878 * 119.99561 * 179.97438 * 17 16 14 20 20 N 1.31517 * 120.00044 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00043 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46729 * 90.00077 * 21 19 17 23 23 H 1.48501 * 109.46901 * 210.00132 * 21 19 17 24 24 H 1.48498 * 109.46946 * 329.99979 * 21 19 17 25 25 H 1.08995 * 109.47308 * 186.13776 * 1 2 3 26 26 H 1.09001 * 109.47543 * 306.13811 * 1 2 3 27 27 H 1.08997 * 109.47448 * 66.13521 * 1 2 3 28 28 H 1.08001 * 122.92866 * 359.97438 * 8 7 5 29 29 H 1.09005 * 110.49380 * 118.67150 * 10 9 8 30 30 H 1.08999 * 110.49977 * 241.20062 * 10 9 8 31 31 H 1.08998 * 110.66299 * 298.44298 * 11 7 5 32 32 H 1.08996 * 110.66361 * 61.55372 * 11 7 5 33 33 H 1.09004 * 109.47061 * 84.82748 * 15 14 12 34 34 H 1.08998 * 109.47093 * 204.82144 * 15 14 12 35 35 H 1.08993 * 109.47702 * 324.82393 * 15 14 12 36 36 H 1.08997 * 109.46930 * 210.00071 * 16 14 12 37 37 H 1.08998 * 109.47004 * 329.99798 * 16 14 12 38 38 H 0.97001 * 119.99846 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2105 0.0788 2.2680 6 8 1.9900 1.2750 2.2370 7 6 2.6812 -0.5235 3.4595 8 6 2.9236 0.1056 4.6160 9 8 3.3643 -0.6953 5.5925 10 6 3.4615 -2.0681 5.1171 11 6 2.9925 -1.9933 3.6504 12 6 2.0323 -0.7104 -1.2305 13 8 2.4735 -1.8367 -1.1428 14 7 1.9913 -0.0941 -2.4284 15 6 1.5690 1.3058 -2.5178 16 6 2.3689 -0.8243 -3.6411 17 6 1.1506 -1.4918 -4.2253 18 1 0.1911 -1.3834 -3.7415 19 6 1.2609 -2.2409 -5.3775 20 7 0.1977 -2.8231 -5.8877 21 14 2.9206 -2.4290 -6.2140 22 1 3.6176 -3.6213 -5.6682 23 1 2.7217 -2.5978 -7.6759 24 1 3.7416 -1.2174 -5.9628 25 1 -0.3633 -1.0217 0.1099 26 1 -0.3634 0.6060 0.8299 27 1 -0.3634 0.4158 -0.9398 28 1 2.7769 1.1673 4.7489 29 1 4.4916 -2.4199 5.1748 30 1 2.8042 -2.7191 5.6935 31 1 2.0988 -2.5986 3.4988 32 1 3.7900 -2.3082 2.9774 33 1 2.4230 1.9558 -2.3267 34 1 1.1775 1.5043 -3.5155 35 1 0.7926 1.4992 -1.7777 36 1 2.7862 -0.1285 -4.3689 37 1 3.1136 -1.5804 -3.3928 38 1 0.2754 -3.3504 -6.6981 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734189666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:42 Heat of formation + Delta-G solvation = -151.294231 kcal Electronic energy + Delta-G solvation = -22414.246309 eV Core-core repulsion = 18836.466732 eV Total energy + Delta-G solvation = -3577.779576 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32349 -41.52846 -40.41447 -37.70590 -36.73427 -34.83224 -34.16923 -32.90782 -30.92154 -30.27125 -27.64118 -26.42835 -25.26968 -23.85096 -23.36882 -21.12886 -20.40062 -19.35496 -19.14868 -18.29828 -17.82586 -17.64043 -17.10025 -16.95771 -16.52968 -16.27504 -16.03462 -15.12374 -14.75843 -14.67472 -14.36074 -14.07335 -14.00508 -13.75395 -13.66745 -13.44037 -13.24082 -13.19392 -12.94933 -12.86208 -12.63530 -12.50890 -12.45923 -12.04658 -11.88678 -11.75540 -11.72182 -10.84074 -10.68537 -9.58840 -9.51553 -8.34849 -6.40635 0.02363 1.32160 1.37257 1.40201 1.45936 1.52831 1.90458 2.16569 2.30654 2.44929 2.99314 3.37381 3.48625 3.66811 3.76413 3.82489 4.01197 4.08971 4.19444 4.27896 4.52827 4.57504 4.60798 4.66112 4.75300 4.84448 4.89380 4.90094 4.91507 5.01416 5.05920 5.31957 5.42150 5.51946 5.77116 6.20653 6.46975 6.60895 6.69725 7.12644 7.26873 8.81745 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.003700 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.313479 B = 7565.683537 C = 7993.982120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.082 3.918 3 H 0.121 0.879 4 O -0.340 6.340 5 C 0.537 3.463 6 O -0.544 6.544 7 C -0.360 4.360 8 C 0.211 3.789 9 O -0.294 6.294 10 C 0.046 3.954 11 C -0.104 4.104 12 C 0.503 3.497 13 O -0.575 6.575 14 N -0.598 5.598 15 C 0.065 3.935 16 C 0.223 3.777 17 C -0.540 4.540 18 H 0.033 0.967 19 C 0.013 3.987 20 N -0.943 5.943 21 Si 0.946 3.054 22 H -0.277 1.277 23 H -0.274 1.274 24 H -0.237 1.237 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.222 0.778 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.348 8.728 21.445 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 H 0.139 0.861 4 O -0.256 6.256 5 C 0.389 3.611 6 O -0.439 6.439 7 C -0.364 4.364 8 C 0.141 3.859 9 O -0.202 6.202 10 C -0.027 4.027 11 C -0.142 4.142 12 C 0.290 3.710 13 O -0.455 6.455 14 N -0.330 5.330 15 C -0.076 4.076 16 C 0.101 3.899 17 C -0.578 4.578 18 H 0.052 0.948 19 C -0.185 4.185 20 N -0.583 5.583 21 Si 0.769 3.231 22 H -0.203 1.203 23 H -0.199 1.199 24 H -0.160 1.160 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.238 0.762 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.525 8.390 21.546 24.025 hybrid contribution 0.027 -0.661 -1.238 1.404 sum 6.552 7.729 20.308 22.695 Atomic orbital electron populations 1.22170 0.90711 1.03717 1.05057 1.22057 0.96936 0.97357 0.81352 0.86100 1.86322 1.77319 1.41956 1.19979 1.19060 0.74072 0.84571 0.83438 1.90833 1.52035 1.16097 1.84903 1.19903 1.23397 0.98783 0.94275 1.23908 0.80554 0.97317 0.84096 1.86751 1.76285 1.21015 1.36142 1.24458 1.05350 0.80023 0.92865 1.21613 1.02922 0.92401 0.97248 1.20666 0.78799 0.86328 0.85187 1.90640 1.47598 1.20820 1.86428 1.47832 1.65237 1.13874 1.06030 1.22192 1.01273 0.79385 1.04774 1.19447 0.94966 0.92697 0.82798 1.21542 0.94955 1.31768 1.09564 0.94829 1.25824 1.00923 0.94212 0.97547 1.70041 1.31526 1.34163 1.22546 0.85737 0.79400 0.80194 0.77774 1.20255 1.19900 1.16041 0.92322 0.88768 0.89049 0.76194 0.86327 0.86093 0.89617 0.90183 0.90028 0.89962 0.89598 0.92454 0.96158 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.71 9.17 71.98 0.66 -4.05 16 2 C 0.08 2.78 2.09 29.85 0.06 2.84 16 3 H 0.12 3.58 6.27 -2.39 -0.01 3.56 16 4 O -0.34 -11.83 9.13 -52.12 -0.48 -12.30 16 5 C 0.54 15.64 7.68 68.64 0.53 16.17 16 6 O -0.54 -16.45 15.95 19.28 0.31 -16.14 16 7 C -0.36 -7.96 6.06 -19.80 -0.12 -8.08 16 8 C 0.21 3.23 11.26 66.83 0.75 3.99 16 9 O -0.29 -4.03 11.02 -70.55 -0.78 -4.81 16 10 C 0.05 0.50 8.23 72.38 0.60 1.10 16 11 C -0.10 -1.94 6.80 30.48 0.21 -1.73 16 12 C 0.50 21.92 6.95 87.66 0.61 22.53 16 13 O -0.58 -30.60 16.13 15.48 0.25 -30.35 16 14 N -0.60 -24.91 2.86 -851.13 -2.43 -27.35 16 15 C 0.07 1.91 9.79 127.77 1.25 3.16 16 16 C 0.22 10.92 4.25 85.63 0.36 11.28 16 17 C -0.54 -31.64 9.94 25.60 0.25 -31.39 16 18 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 19 C 0.01 0.78 5.47 84.65 0.46 1.25 16 20 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 21 Si 0.95 44.24 27.47 68.60 1.88 46.13 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.09 2.58 6.33 -2.39 -0.02 2.56 16 28 H 0.22 2.24 7.99 -2.91 -0.02 2.22 16 29 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.08 2.42 8.03 -2.39 -0.02 2.40 16 35 H 0.09 2.11 4.92 -2.39 -0.01 2.10 16 36 H 0.06 2.54 7.13 -2.39 -0.02 2.52 16 37 H 0.02 1.07 6.78 -2.39 -0.02 1.06 16 38 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -81.22 325.77 5.70 -75.52 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.02 Total: 11.28 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 5.63 Total: 17.06 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -2.13 Total: -86.37 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -0.70 Total: -63.61 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -81.22 5.70 -75.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734189666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.777 kcal (2) G-P(sol) polarization free energy of solvation -81.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds