Wall clock time and date at job start Tue Mar 31 2020 02:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47085 * 2 1 4 4 C 1.46499 * 119.99978 * 269.99916 * 3 2 1 5 5 C 1.50703 * 109.46999 * 269.99997 * 4 3 2 6 6 H 1.07996 * 119.99872 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99781 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00156 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99771 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47522 * 60.00294 * 9 7 5 11 11 H 1.48503 * 109.47169 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47290 * 300.00176 * 9 7 5 13 13 C 1.34772 * 119.99665 * 90.00279 * 3 2 1 14 14 O 1.21281 * 119.99957 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00570 * 359.97438 * 13 3 2 16 16 O 1.42901 * 109.47530 * 180.02562 * 15 13 3 17 17 C 1.34928 * 117.00090 * 180.02562 * 16 15 13 18 18 O 1.21666 * 120.00044 * 0.02562 * 17 16 15 19 19 C 1.41558 * 119.99814 * 180.02562 * 17 16 15 20 20 C 1.33874 * 125.96967 * 180.02562 * 19 17 16 21 21 O 1.33757 * 114.13903 * 179.97438 * 20 19 17 22 22 C 1.45610 * 110.37911 * 359.97438 * 21 20 19 23 23 C 1.51450 * 125.97479 * 359.97438 * 19 17 16 24 24 H 1.08999 * 109.47102 * 59.99322 * 1 2 3 25 25 H 1.08993 * 109.47627 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47149 * 299.99975 * 1 2 3 27 27 H 1.08996 * 109.47509 * 239.99995 * 2 1 3 28 28 H 1.09007 * 109.47088 * 120.00020 * 2 1 3 29 29 H 1.08994 * 109.46928 * 30.00251 * 4 3 2 30 30 H 1.09003 * 109.46678 * 150.00314 * 4 3 2 31 31 H 0.96992 * 119.99807 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47065 * 59.99860 * 15 13 3 33 33 H 1.09004 * 109.46952 * 300.00422 * 15 13 3 34 34 H 1.07994 * 122.93229 * 359.68901 * 20 19 17 35 35 H 1.09003 * 110.49280 * 241.33662 * 22 21 20 36 36 H 1.08996 * 110.61119 * 118.72339 * 22 21 20 37 37 H 1.09002 * 110.66047 * 298.48213 * 23 19 17 38 38 H 1.09007 * 110.65984 * 61.59110 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9131 2.0955 -3.4175 10 1 6.1402 0.6388 -3.5948 11 1 6.1607 2.7957 -4.7035 12 1 6.8410 2.6188 -2.3829 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9913 1.3064 2.4723 16 8 2.3004 2.1820 3.5585 17 6 2.1286 1.6957 4.8053 18 8 1.7273 0.5582 4.9647 19 6 2.4151 2.5091 5.9279 20 6 2.2887 2.1504 7.2115 21 8 2.6265 3.1076 8.0827 22 6 3.0508 4.3086 7.3772 23 6 2.9192 3.9366 5.8868 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6878 -2.0283 30 1 2.0955 3.1411 -1.1383 31 1 3.6749 3.5156 -4.4443 32 1 2.6212 0.4186 2.5302 33 1 0.9432 1.0125 2.5299 34 1 1.9399 1.1751 7.5170 35 1 4.0857 4.5488 7.6209 36 1 2.3980 5.1470 7.6200 37 1 3.8884 3.9881 5.3907 38 1 2.1971 4.5853 5.3908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734192865.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:11 Heat of formation + Delta-G solvation = -157.736624 kcal Electronic energy + Delta-G solvation = -22108.622777 eV Core-core repulsion = 18530.563838 eV Total energy + Delta-G solvation = -3578.058940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.25286 -41.38042 -40.41937 -37.66039 -36.97156 -34.94578 -34.07037 -31.75059 -31.01657 -30.55337 -28.46630 -25.48769 -24.62879 -24.01896 -23.66158 -21.16779 -20.27417 -19.27229 -18.64714 -18.24343 -17.96954 -17.73792 -17.24924 -17.10138 -16.56354 -16.22510 -15.92569 -15.08760 -14.76508 -14.62460 -14.42856 -14.03083 -13.92047 -13.79486 -13.61346 -13.28826 -13.14989 -13.07888 -12.94198 -12.66146 -12.52779 -12.51324 -12.21348 -12.03512 -11.78456 -11.75157 -11.70264 -10.72878 -10.64885 -9.58669 -9.55089 -8.23686 -6.38523 0.02665 1.36060 1.39668 1.41516 1.48920 1.60946 1.90924 2.16815 2.35791 2.52965 3.06272 3.43572 3.51158 3.69835 3.86826 3.98408 4.04281 4.09380 4.15251 4.30279 4.37861 4.58612 4.66483 4.87862 4.89742 4.91731 4.93974 5.01974 5.02373 5.17852 5.29833 5.35632 5.53666 5.77145 5.79283 6.03558 6.55897 6.70150 6.71314 7.20595 7.35966 8.83668 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.003734 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.938553 B = 7497.136516 C = 8319.545002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.264 3.736 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.499 3.501 14 O -0.579 6.579 15 C 0.064 3.936 16 O -0.346 6.346 17 C 0.539 3.461 18 O -0.546 6.546 19 C -0.361 4.361 20 C 0.211 3.789 21 O -0.294 6.294 22 C 0.046 3.954 23 C -0.105 4.105 24 H 0.044 0.956 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.030 0.970 30 H -0.001 1.001 31 H 0.268 0.732 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.222 0.778 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 -4.609 21.294 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.143 3.857 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.204 1.204 13 C 0.287 3.713 14 O -0.458 6.458 15 C -0.013 4.013 16 O -0.262 6.262 17 C 0.390 3.610 18 O -0.441 6.441 19 C -0.364 4.364 20 C 0.142 3.858 21 O -0.202 6.202 22 C -0.027 4.027 23 C -0.142 4.142 24 H 0.063 0.937 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.048 0.952 30 H 0.017 0.983 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.239 0.761 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.099 0.901 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.823 -4.190 21.379 22.118 hybrid contribution 0.767 0.179 -1.267 1.492 sum -3.055 -4.010 20.112 20.735 Atomic orbital electron populations 1.22171 0.94303 1.03808 1.01796 1.21866 0.95589 0.80972 1.04369 1.48209 1.63575 1.15266 1.05675 1.18780 0.95591 0.91614 0.79742 1.21688 0.97855 1.32366 1.06725 0.92758 1.25850 1.02448 0.94360 0.96332 1.70039 1.37846 1.34018 1.14771 0.85463 0.78892 0.79076 0.77355 1.18392 1.20234 1.20405 1.20571 0.78277 0.86622 0.85863 1.90666 1.47189 1.20215 1.87774 1.22371 1.04392 0.92282 0.82304 1.86241 1.79555 1.45285 1.15107 1.19002 0.74130 0.85288 0.82538 1.90849 1.46246 1.20107 1.86856 1.19899 1.24056 1.00236 0.92195 1.23911 0.81947 0.93196 0.86763 1.86750 1.75806 1.23466 1.34147 1.24453 1.03913 0.85891 0.88421 1.21618 1.02736 0.92091 0.97794 0.93663 0.88318 0.92517 0.89960 0.88479 0.95234 0.98308 0.92310 0.87016 0.86542 0.76133 0.86286 0.86115 0.90062 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.37 16 2 C 0.09 2.90 5.93 86.38 0.51 3.42 16 3 N -0.59 -25.80 2.46 -826.15 -2.03 -27.83 16 4 C 0.26 14.36 5.16 85.63 0.44 14.80 16 5 C -0.55 -31.86 9.39 25.60 0.24 -31.62 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 9 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.50 22.09 7.75 87.66 0.68 22.77 16 14 O -0.58 -31.77 16.08 16.00 0.26 -31.51 16 15 C 0.06 2.12 4.41 71.24 0.31 2.43 16 16 O -0.35 -12.15 9.44 -51.97 -0.49 -12.64 16 17 C 0.54 15.85 7.72 68.64 0.53 16.38 16 18 O -0.55 -16.73 16.49 19.29 0.32 -16.41 16 19 C -0.36 -8.12 6.06 -19.80 -0.12 -8.24 16 20 C 0.21 3.31 11.26 66.83 0.75 4.06 16 21 O -0.29 -4.13 11.02 -70.58 -0.78 -4.91 16 22 C 0.05 0.53 8.23 72.38 0.60 1.12 16 23 C -0.10 -2.02 6.80 30.48 0.21 -1.81 16 24 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.06 1.36 7.22 -2.38 -0.02 1.35 16 27 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 28 H 0.10 2.39 6.44 -2.38 -0.02 2.37 16 29 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 30 H 0.00 -0.08 7.42 -2.39 -0.02 -0.09 16 31 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.11 3.25 7.39 -2.38 -0.02 3.23 16 33 H 0.12 3.25 7.17 -2.38 -0.02 3.23 16 34 H 0.22 2.29 7.99 -2.91 -0.02 2.27 16 35 H 0.12 0.90 8.14 -2.39 -0.02 0.89 16 36 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -79.54 332.77 6.00 -73.54 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.06 Total: 7.71 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 5.35 Total: 20.95 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -1.74 Total: -83.81 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: -0.69 Total: -65.48 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -79.54 6.00 -73.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734192865.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.201 kcal (2) G-P(sol) polarization free energy of solvation -79.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds