Wall clock time and date at job start Tue Mar 31 2020 02:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48501 * 109.47245 * 239.99899 * 3 2 1 5 5 H 1.48504 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47176 * 119.99422 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21283 * 119.99990 * 359.71991 * 11 10 9 13 13 C 1.50698 * 119.99538 * 179.72653 * 11 10 9 14 14 O 1.45209 * 109.46951 * 179.97438 * 13 11 10 15 15 C 1.34223 * 116.99725 * 179.97438 * 14 13 11 16 16 O 1.20820 * 120.00620 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99666 * 179.97438 * 15 14 13 18 18 H 1.08995 * 115.56696 * 34.38136 * 17 15 14 19 19 C 1.53182 * 117.51984 * 248.60589 * 17 15 14 20 20 C 1.52137 * 59.77694 * 252.57608 * 19 17 15 21 21 C 1.54028 * 121.47477 * 249.14300 * 20 19 17 22 22 C 1.55183 * 101.83059 * 195.69479 * 21 20 19 23 23 O 1.44450 * 103.62916 * 36.33390 * 22 21 20 24 24 C 1.43995 * 107.04934 * 320.42744 * 23 22 21 25 25 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 26 26 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 27 27 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 28 28 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 29 29 H 1.09003 * 109.47112 * 299.99065 * 13 11 10 30 30 H 1.08993 * 109.47916 * 59.99687 * 13 11 10 31 31 H 1.08999 * 117.52261 * 0.02562 * 19 17 15 32 32 H 1.09003 * 117.51718 * 145.10067 * 19 17 15 33 33 H 1.08995 * 110.96296 * 313.83648 * 21 20 19 34 34 H 1.09006 * 110.95883 * 77.56749 * 21 20 19 35 35 H 1.08996 * 110.59564 * 277.79575 * 22 21 20 36 36 H 1.09004 * 110.72329 * 154.92808 * 22 21 20 37 37 H 1.08995 * 109.97419 * 266.93928 * 24 23 22 38 38 H 1.09005 * 110.00108 * 145.68336 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5616 -5.1049 -0.0046 13 6 2.7334 -6.0286 -0.0087 14 8 2.0074 -7.2862 -0.0135 15 6 2.7385 -8.4118 -0.0188 16 8 3.9451 -8.3486 -0.0199 17 6 2.0544 -9.7547 -0.0235 18 1 1.1172 -9.8032 -0.5779 19 6 2.1761 -10.6153 1.2378 20 6 2.9375 -10.9936 -0.0238 21 6 2.5666 -12.2445 -0.8424 22 6 3.8245 -12.4265 -1.7328 23 8 4.9136 -12.0394 -0.8665 24 6 4.4656 -10.9001 -0.1084 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8898 27 1 0.6241 -2.5567 0.8902 28 1 3.1569 -3.4353 0.0021 29 1 3.3599 -5.9671 -0.8985 30 1 3.3601 -5.9748 0.8814 31 1 2.7505 -10.2100 2.0708 32 1 1.3188 -11.2298 1.5128 33 1 2.4211 -13.1070 -0.1922 34 1 1.6809 -12.0634 -1.4514 35 1 3.7759 -11.7724 -2.6033 36 1 3.9313 -13.4664 -2.0416 37 1 4.7548 -9.9791 -0.6144 38 1 4.8962 -10.9257 0.8927 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764646774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:12 Heat of formation + Delta-G solvation = -162.345749 kcal Electronic energy + Delta-G solvation = -21487.907488 eV Core-core repulsion = 17909.648681 eV Total energy + Delta-G solvation = -3578.258806 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.13880 -40.82295 -40.10855 -37.82960 -36.83887 -36.20186 -34.43305 -31.39759 -30.89814 -28.93540 -28.25157 -25.83418 -24.49171 -23.62647 -22.04479 -21.67706 -20.55747 -19.21070 -18.96978 -17.95800 -17.82229 -17.30977 -17.02631 -16.99904 -16.56865 -16.28109 -16.09020 -15.63306 -14.97196 -14.60750 -14.40775 -14.31638 -14.03822 -13.77715 -13.73108 -13.49609 -13.18122 -12.96845 -12.69220 -12.39924 -12.25154 -12.06299 -11.95681 -11.75228 -11.53917 -11.49342 -11.08031 -10.92236 -10.81768 -10.44666 -9.95250 -8.30465 -6.47271 0.88727 1.15987 1.44017 1.47191 1.52532 1.55684 2.31383 2.48351 2.54878 2.96532 3.04669 3.21739 3.50179 3.60149 3.65204 3.81138 3.90215 4.02307 4.03388 4.26085 4.42857 4.44550 4.69119 4.75814 4.80379 4.84070 4.88037 5.02987 5.06091 5.06379 5.20320 5.31106 5.40050 5.61358 5.80798 5.86486 6.53092 6.61437 6.76156 7.18900 7.33685 8.81412 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.047616 B = 0.002527 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.893362 B =11077.929409 C =11396.049873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.499 3.501 12 O -0.584 6.584 13 C 0.060 3.940 14 O -0.344 6.344 15 C 0.490 3.510 16 O -0.520 6.520 17 C -0.162 4.162 18 H 0.157 0.843 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.112 4.112 22 C 0.038 3.962 23 O -0.403 6.403 24 C 0.070 3.930 25 H 0.269 0.731 26 H -0.008 1.008 27 H -0.007 1.007 28 H 0.413 0.587 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.145 0.855 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.892 -24.402 -0.278 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.464 6.464 13 C -0.016 4.016 14 O -0.260 6.260 15 C 0.335 3.665 16 O -0.410 6.410 17 C -0.181 4.181 18 H 0.175 0.825 19 C -0.146 4.146 20 C -0.131 4.131 21 C -0.149 4.149 22 C -0.038 4.038 23 O -0.323 6.323 24 C -0.006 4.006 25 H 0.078 0.922 26 H 0.010 0.990 27 H 0.011 0.989 28 H 0.249 0.751 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.124 0.876 32 H 0.163 0.837 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.458 -24.470 -0.265 25.583 hybrid contribution 0.261 1.561 -0.098 1.586 sum 7.719 -22.909 -0.363 24.177 Atomic orbital electron populations 1.70120 1.08233 1.28719 1.49741 1.26052 0.95779 1.03867 0.93812 0.85206 0.77901 0.76611 0.79494 1.18699 1.21140 1.18661 1.21578 0.94410 0.90403 1.53205 0.89620 1.18631 0.88569 0.83777 0.94613 1.46049 1.11738 1.04738 1.72474 1.20690 0.89296 0.84722 0.76791 1.90687 1.18914 1.85308 1.51495 1.22743 0.92569 0.79211 1.07098 1.86558 1.41403 1.14503 1.83511 1.23305 0.85770 0.86077 0.71340 1.90590 1.15976 1.87612 1.46849 1.21944 1.03116 0.84312 1.08745 0.82537 1.23222 1.03072 0.98665 0.89656 1.22344 0.94173 0.94375 1.02240 1.22709 0.99177 0.95084 0.97905 1.23797 0.85019 1.02054 0.92947 1.88899 1.38984 1.48452 1.55952 1.22882 0.91012 0.89516 0.97203 0.92171 0.98956 0.98924 0.75114 0.85908 0.85771 0.87650 0.83678 0.87695 0.87786 0.92282 0.86819 0.90776 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 2 C 0.00 0.26 5.46 84.66 0.46 0.73 16 3 Si 0.98 41.69 29.54 68.60 2.03 43.71 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 7 C -0.56 -29.75 9.28 25.60 0.24 -29.51 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.34 5.43 85.63 0.46 14.80 16 10 N -0.70 -28.68 5.55 -466.78 -2.59 -31.27 16 11 C 0.50 19.89 7.91 87.66 0.69 20.59 16 12 O -0.58 -29.23 16.50 15.76 0.26 -28.97 16 13 C 0.06 1.72 5.94 71.24 0.42 2.15 16 14 O -0.34 -10.34 9.76 -45.00 -0.44 -10.78 16 15 C 0.49 12.15 7.74 71.24 0.55 12.70 16 16 O -0.52 -14.12 13.14 21.98 0.29 -13.83 16 17 C -0.16 -2.80 6.18 -11.76 -0.07 -2.87 16 18 H 0.16 2.20 8.14 -2.39 -0.02 2.18 16 19 C -0.11 -1.37 10.01 30.37 0.30 -1.06 16 20 C -0.13 -1.97 2.43 -52.29 -0.13 -2.10 16 21 C -0.11 -1.13 6.94 31.69 0.22 -0.91 16 22 C 0.04 0.52 7.73 72.73 0.56 1.08 16 23 O -0.40 -8.61 11.53 -148.98 -1.72 -10.32 16 24 C 0.07 1.43 6.57 72.09 0.47 1.90 16 25 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 26 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 28 H 0.41 13.60 8.32 -92.71 -0.77 12.83 16 29 H 0.12 2.91 8.13 -2.39 -0.02 2.89 16 30 H 0.12 2.91 8.13 -2.39 -0.02 2.89 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.72 8.13 -2.38 -0.02 0.70 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.07 1.84 5.54 -2.39 -0.01 1.83 16 38 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -75.35 329.68 2.62 -72.73 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.31 Total: 16.34 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 4.19 Total: 17.48 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -2.30 Total: -86.35 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -1.61 Total: -63.91 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -75.35 2.62 -72.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764646774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.613 kcal (2) G-P(sol) polarization free energy of solvation -75.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds