Wall clock time and date at job start Tue Mar 31 2020 02:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99597 * 2 1 4 4 H 1.48500 * 109.47176 * 269.99980 * 3 2 1 5 5 H 1.48496 * 109.47200 * 30.00434 * 3 2 1 6 6 H 1.48497 * 109.46541 * 150.00315 * 3 2 1 7 7 C 1.37873 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99648 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00491 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.34778 * 120.00078 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00383 * 179.72389 * 11 10 9 14 14 O 1.45197 * 109.47394 * 180.27906 * 13 11 10 15 15 C 1.34239 * 116.99856 * 180.02562 * 14 13 11 16 16 O 1.20820 * 119.99891 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99649 * 180.02562 * 15 14 13 18 18 H 1.09003 * 115.56556 * 61.57958 * 17 15 14 19 19 C 1.53180 * 117.51814 * 207.43647 * 17 15 14 20 20 C 1.52137 * 117.51928 * 275.80743 * 17 15 14 21 21 C 1.54032 * 121.46679 * 141.70758 * 20 17 15 22 22 C 1.55185 * 101.83043 * 195.73530 * 21 20 17 23 23 O 1.44456 * 103.63083 * 36.32570 * 22 21 20 24 24 C 1.43986 * 107.04561 * 320.42521 * 23 22 21 25 25 H 0.96994 * 120.00023 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47331 * 59.99559 * 9 7 2 27 27 H 1.08999 * 109.46981 * 299.99816 * 9 7 2 28 28 H 0.96996 * 120.00098 * 359.97438 * 10 9 7 29 29 H 1.09006 * 109.47007 * 300.28363 * 13 11 10 30 30 H 1.08999 * 109.46934 * 60.27544 * 13 11 10 31 31 H 1.09000 * 117.52073 * 214.84740 * 19 17 15 32 32 H 1.08996 * 117.52137 * 359.97438 * 19 17 15 33 33 H 1.09004 * 110.95707 * 313.87417 * 21 20 17 34 34 H 1.09002 * 110.95539 * 77.59799 * 21 20 17 35 35 H 1.08998 * 110.58942 * 277.78539 * 22 21 20 36 36 H 1.09007 * 110.71726 * 154.92112 * 22 21 20 37 37 H 1.08996 * 109.97704 * 266.94833 * 24 23 22 38 38 H 1.09004 * 109.96845 * 145.67998 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 1.7540 -4.8833 -0.0033 12 8 0.5616 -5.1050 -0.0035 13 6 2.7332 -6.0287 -0.0106 14 8 2.0073 -7.2861 -0.0165 15 6 2.7384 -8.4119 -0.0229 16 8 3.9450 -8.3486 -0.0240 17 6 2.0542 -9.7547 -0.0299 18 1 1.4233 -9.9567 -0.8955 19 6 2.8075 -10.9360 0.5894 20 6 1.6140 -10.3262 1.3096 21 6 0.2872 -11.0943 1.4590 22 6 0.0935 -11.0981 2.9987 23 8 0.5967 -9.8074 3.4083 24 6 1.7702 -9.5416 2.6176 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6242 -2.5575 0.8880 28 1 3.1568 -3.4353 -0.0029 29 1 3.3589 -5.9661 -0.9010 30 1 3.3609 -5.9757 0.8789 31 1 2.6724 -11.9156 0.1309 32 1 3.7978 -10.7418 1.0012 33 1 -0.5275 -10.5650 0.9648 34 1 0.3796 -12.1103 1.0751 35 1 0.6745 -11.8989 3.4562 36 1 -0.9615 -11.1970 3.2544 37 1 2.6610 -9.8769 3.1487 38 1 1.8424 -8.4748 2.4054 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764646824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:14 Heat of formation + Delta-G solvation = -166.528718 kcal Electronic energy + Delta-G solvation = -21736.283799 eV Core-core repulsion = 18157.843606 eV Total energy + Delta-G solvation = -3578.440193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.09739 -40.81237 -40.19601 -37.85966 -36.90688 -36.21404 -34.44086 -31.43516 -30.88997 -28.83933 -28.43973 -25.88185 -24.47539 -23.80514 -21.74207 -21.68200 -20.72074 -19.22572 -18.87270 -18.12365 -17.91752 -17.27899 -17.15923 -16.98154 -16.68623 -16.23367 -16.03465 -15.83320 -14.97055 -14.65936 -14.45504 -14.17283 -13.94158 -13.81161 -13.72496 -13.49060 -13.24141 -12.95358 -12.72821 -12.48562 -12.24383 -12.09254 -11.97703 -11.85162 -11.52843 -11.51443 -11.00160 -10.94136 -10.83333 -10.69964 -9.96435 -8.30956 -6.47911 0.89662 1.15080 1.43625 1.45437 1.51041 1.57011 2.30461 2.45103 2.53168 2.88215 3.04244 3.19509 3.45434 3.57569 3.64434 3.80709 3.89636 3.98698 4.02084 4.21607 4.38573 4.42432 4.54733 4.64276 4.78091 4.83660 4.91471 4.99779 5.04373 5.08781 5.18147 5.19283 5.39176 5.60586 5.80135 5.82063 6.48475 6.60820 6.74880 7.18202 7.32872 8.81293 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029939 B = 0.002946 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.999337 B = 9503.644929 C = 9995.969146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.499 3.501 12 O -0.583 6.583 13 C 0.058 3.942 14 O -0.346 6.346 15 C 0.490 3.510 16 O -0.521 6.521 17 C -0.161 4.161 18 H 0.165 0.835 19 C -0.097 4.097 20 C -0.145 4.145 21 C -0.113 4.113 22 C 0.039 3.961 23 O -0.404 6.404 24 C 0.075 3.925 25 H 0.269 0.731 26 H -0.007 1.007 27 H -0.009 1.009 28 H 0.413 0.587 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.151 0.849 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.368 -25.248 1.667 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.284 3.716 12 O -0.464 6.464 13 C -0.018 4.018 14 O -0.261 6.261 15 C 0.334 3.666 16 O -0.410 6.410 17 C -0.179 4.179 18 H 0.182 0.818 19 C -0.133 4.133 20 C -0.146 4.146 21 C -0.150 4.150 22 C -0.036 4.036 23 O -0.324 6.324 24 C -0.002 4.002 25 H 0.078 0.922 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.249 0.751 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.169 0.831 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.637 -25.080 1.843 26.009 hybrid contribution 0.427 1.452 -0.210 1.528 sum 7.064 -23.629 1.633 24.716 Atomic orbital electron populations 1.70136 1.08277 1.28669 1.49802 1.26070 0.95784 1.03921 0.93790 0.85137 0.78473 0.76878 0.78615 1.19561 1.20993 1.17898 1.21605 0.94429 0.90350 1.53123 0.89561 1.18633 0.88577 0.83819 0.94564 1.46037 1.11736 1.04683 1.72479 1.20688 0.89288 0.84754 0.76834 1.90692 1.18952 1.85306 1.51439 1.22768 0.92635 0.79329 1.07116 1.86599 1.41466 1.14593 1.83443 1.23303 0.85882 0.86167 0.71242 1.90651 1.15974 1.88018 1.46384 1.22003 1.06796 0.87984 1.01147 0.81773 1.23340 0.95468 0.96286 0.98193 1.22413 0.99444 1.01636 0.91088 1.22715 0.93624 1.01860 0.96823 1.23866 1.01149 0.84964 0.93649 1.88950 1.43578 1.38352 1.61531 1.22588 0.89302 0.98785 0.89557 0.92169 0.98953 0.99062 0.75092 0.85591 0.85997 0.83070 0.87529 0.90177 0.86087 0.89976 0.87679 0.90267 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.99 42.14 29.54 68.60 2.03 44.16 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.56 -30.09 9.28 25.60 0.24 -29.86 16 8 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.27 14.60 5.43 85.63 0.46 15.06 16 10 N -0.70 -29.40 5.55 -466.81 -2.59 -31.99 16 11 C 0.50 20.59 7.91 87.65 0.69 21.28 16 12 O -0.58 -30.25 16.50 15.76 0.26 -29.99 16 13 C 0.06 1.74 5.94 71.23 0.42 2.16 16 14 O -0.35 -11.01 9.73 -45.15 -0.44 -11.45 16 15 C 0.49 12.72 6.44 71.24 0.46 13.18 16 16 O -0.52 -14.74 16.36 21.98 0.36 -14.38 16 17 C -0.16 -2.85 6.17 -11.76 -0.07 -2.92 16 18 H 0.16 2.25 8.14 -2.39 -0.02 2.23 16 19 C -0.10 -1.10 9.81 30.37 0.30 -0.81 16 20 C -0.15 -2.34 2.43 -52.29 -0.13 -2.47 16 21 C -0.11 -1.37 6.94 31.69 0.22 -1.15 16 22 C 0.04 0.57 7.73 72.73 0.56 1.14 16 23 O -0.40 -10.00 11.53 -148.98 -1.72 -11.71 16 24 C 0.07 1.65 7.18 72.09 0.52 2.16 16 25 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H 0.41 13.96 8.32 -92.71 -0.77 13.19 16 29 H 0.13 3.08 8.13 -2.38 -0.02 3.07 16 30 H 0.12 3.05 8.13 -2.39 -0.02 3.04 16 31 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.11 1.39 7.94 -2.39 -0.02 1.37 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.12 0.63 8.13 -2.39 -0.02 0.61 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.59 7.23 -2.39 -0.02 1.58 16 Total: -1.00 -78.62 333.48 2.63 -75.99 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.31 Total: 16.66 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 4.14 Total: 18.47 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.30 Total: -87.75 kcal Atomic # 8 Polarization: -66.00 SS G_CDS: -1.54 Total: -67.53 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -78.62 2.63 -75.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764646824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.540 kcal (2) G-P(sol) polarization free energy of solvation -78.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds