Wall clock time and date at job start Tue Mar 31 2020 02:29:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.35240 * 126.69461 * 2 1
4 4 C 1.42027 * 103.95661 * 179.97438 * 3 2 1
5 5 N 1.39505 * 126.89147 * 179.97438 * 4 3 2
6 6 C 1.34771 * 120.00326 * 0.02562 * 5 4 3
7 7 O 1.21276 * 120.00195 * 359.97438 * 6 5 4
8 8 C 1.50700 * 120.00166 * 179.97438 * 6 5 4
9 9 N 1.46897 * 109.47465 * 179.97438 * 8 6 5
10 10 C 1.46905 * 110.99828 * 293.95812 * 9 8 6
11 11 C 1.46897 * 111.00290 * 169.99788 * 9 8 6
12 12 C 1.53000 * 109.47303 * 287.96786 * 11 9 8
13 13 H 1.09003 * 109.47048 * 58.51148 * 12 11 9
14 14 O 1.42901 * 109.47204 * 298.50941 * 12 11 9
15 15 C 1.50701 * 109.46913 * 178.50712 * 12 11 9
16 16 H 1.07997 * 119.99976 * 0.02562 * 15 12 11
17 17 C 1.37880 * 119.99692 * 180.02562 * 15 12 11
18 18 N 1.31512 * 120.00098 * 0.02562 * 17 15 12
19 19 Si 1.86796 * 119.99593 * 180.02562 * 17 15 12
20 20 H 1.48497 * 109.47293 * 90.00155 * 19 17 15
21 21 H 1.48506 * 109.46707 * 209.99696 * 19 17 15
22 22 H 1.48496 * 109.47657 * 329.99819 * 19 17 15
23 23 N 1.30721 * 106.21057 * 0.24381 * 4 3 2
24 24 O 1.20916 * 111.47601 * 359.57166 * 23 4 3
25 25 H 1.09002 * 109.46574 * 90.00118 * 1 2 3
26 26 H 1.09004 * 109.46953 * 209.99773 * 1 2 3
27 27 H 1.08991 * 109.47010 * 329.99837 * 1 2 3
28 28 H 1.07997 * 128.02407 * 359.94806 * 3 2 1
29 29 H 0.97003 * 119.99304 * 180.02562 * 5 4 3
30 30 H 1.09005 * 109.47130 * 59.99782 * 8 6 5
31 31 H 1.08998 * 109.47057 * 300.00223 * 8 6 5
32 32 H 1.08995 * 109.46919 * 302.02581 * 10 9 8
33 33 H 1.08994 * 109.47109 * 62.03152 * 10 9 8
34 34 H 1.09002 * 109.46663 * 182.02767 * 10 9 8
35 35 H 1.09000 * 109.47058 * 167.96621 * 11 9 8
36 36 H 1.08998 * 109.46527 * 47.96960 * 11 9 8
37 37 H 0.96699 * 113.99508 * 300.00466 * 14 12 11
38 38 H 0.96995 * 120.00245 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3152 1.0844 0.0000
4 6 3.6251 0.5354 0.0006
5 7 4.8287 1.2408 0.0004
6 6 4.8201 2.5884 0.0000
7 8 3.7659 3.1881 -0.0006
8 6 6.1203 3.3503 0.0003
9 7 5.8426 4.7928 -0.0009
10 6 5.1971 5.2037 -1.2549
11 6 7.0692 5.5652 0.2376
12 6 7.4929 5.4111 1.6996
13 1 7.6530 4.3561 1.9222
14 8 6.4668 5.9270 2.5499
15 6 8.7712 6.1737 1.9352
16 1 9.2347 6.7145 1.1234
17 6 9.3489 6.1809 3.1871
18 7 8.7846 5.5218 4.1755
19 14 10.9329 7.1267 3.4793
20 1 10.6108 8.5162 3.8925
21 1 11.7166 6.4607 4.5506
22 1 11.7307 7.1551 2.2271
23 7 3.4765 -0.7633 -0.0044
24 8 2.3083 -1.0752 0.0005
25 1 -0.3632 0.0000 -1.0277
26 1 -0.3633 -0.8900 0.5138
27 1 -0.3633 0.8899 0.5138
28 1 2.0305 2.1262 -0.0008
29 1 5.6718 0.7611 0.0005
30 1 6.6939 3.0904 -0.8894
31 1 6.6932 3.0909 0.8905
32 1 5.8379 4.9408 -2.0965
33 1 4.2390 4.6936 -1.3544
34 1 5.0354 6.2816 -1.2441
35 1 6.8835 6.6175 0.0221
36 1 7.8630 5.1959 -0.4117
37 1 6.2711 6.8631 2.4066
38 1 9.1908 5.5271 5.0563
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000809572877.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:29:40
Heat of formation + Delta-G solvation = -5.490218 kcal
Electronic energy + Delta-G solvation = -22171.737047 eV
Core-core repulsion = 18632.572759 eV
Total energy + Delta-G solvation = -3539.164289 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.136 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-44.90040 -40.10990 -37.23490 -35.54906 -34.62064 -33.71628 -32.14833 -32.09015
-28.89079 -28.21553 -27.91847 -25.54184 -23.88369 -22.72285 -21.42139 -20.71549
-19.92298 -17.73293 -17.47863 -17.17039 -16.81759 -16.56329 -15.59078 -14.94366
-14.76313 -14.54256 -14.14840 -13.82631 -13.69053 -13.60410 -13.47877 -13.28228
-12.66201 -12.57454 -12.48888 -12.00254 -11.51904 -11.31203 -11.29340 -11.21301
-10.95378 -10.82033 -10.64835 -10.07999 -9.81661 -9.47787 -9.03980 -8.85414
-8.60645 -8.15900 -7.72151 -6.03262 -4.22355 1.34099 1.99343 2.48718
2.88580 3.07458 3.25592 3.32976 3.34692 4.18090 4.28379 4.44666
4.67860 4.81616 5.03731 5.12639 5.16117 5.24171 5.30984 5.41171
5.54759 5.63636 5.66661 5.74281 5.91405 6.05676 6.20022 6.28352
6.39850 6.48440 6.73031 7.01258 7.35265 7.48691 7.71211 7.82175
8.04397 8.15936 8.25972 8.81585 9.44370 9.60574 11.00700
Molecular weight = 283.14amu
Principal moments of inertia in cm(-1)
A = 0.030230 B = 0.003303 C = 0.003179
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 926.002658 B = 8474.476617 C = 8805.185641
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C -0.030 4.030
3 C -0.225 4.225
4 C 0.255 3.745
5 N -0.638 5.638
6 C 0.528 3.472
7 O -0.493 6.493
8 C 0.043 3.957
9 N -0.513 5.513
10 C 0.018 3.982
11 C 0.030 3.970
12 C 0.237 3.763
13 H 0.052 0.948
14 O -0.553 6.553
15 C -0.576 4.576
16 H 0.055 0.945
17 C 0.080 3.920
18 N -0.857 5.857
19 Si 0.889 3.111
20 H -0.279 1.279
21 H -0.286 1.286
22 H -0.274 1.274
23 N -0.397 5.397
24 O 0.092 5.908
25 H 0.087 0.913
26 H 0.082 0.918
27 H 0.092 0.908
28 H 0.191 0.809
29 H 0.419 0.581
30 H 0.063 0.937
31 H 0.119 0.881
32 H 0.012 0.988
33 H 0.078 0.922
34 H 0.066 0.934
35 H 0.070 0.930
36 H 0.031 0.969
37 H 0.343 0.657
38 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.244 -9.240 -10.720 18.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.094 4.094
3 C -0.248 4.248
4 C 0.006 3.994
5 N -0.292 5.292
6 C 0.315 3.685
7 O -0.363 6.363
8 C -0.088 4.088
9 N -0.237 5.237
10 C -0.130 4.130
11 C -0.097 4.097
12 C 0.179 3.821
13 H 0.069 0.931
14 O -0.355 6.355
15 C -0.615 4.615
16 H 0.073 0.927
17 C -0.126 4.126
18 N -0.493 5.493
19 Si 0.716 3.284
20 H -0.205 1.205
21 H -0.211 1.211
22 H -0.199 1.199
23 N -0.114 5.114
24 O 0.032 5.968
25 H 0.105 0.895
26 H 0.101 0.899
27 H 0.111 0.889
28 H 0.208 0.792
29 H 0.255 0.745
30 H 0.081 0.919
31 H 0.137 0.863
32 H 0.031 0.969
33 H 0.096 0.904
34 H 0.084 0.916
35 H 0.088 0.912
36 H 0.049 0.951
37 H 0.187 0.813
38 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -12.490 -10.340 -9.929 19.013
hybrid contribution 1.854 1.397 -0.665 2.415
sum -10.636 -8.943 -10.594 17.473
Atomic orbital electron populations
1.20322 0.83865 1.04691 1.04016 1.24426 0.96441 0.85942 1.02559
1.22761 0.89339 1.02162 1.10493 1.20582 0.88791 0.88729 1.01310
1.42761 1.05947 1.06804 1.73642 1.21101 0.92874 0.79991 0.74536
1.90588 1.32817 1.67396 1.45533 1.21951 0.92303 0.90537 1.04023
1.61675 1.27411 1.00632 1.34006 1.22571 0.99603 1.01671 0.89128
1.23203 0.87726 0.96819 1.01955 1.19311 0.85401 0.95454 0.81963
0.93081 1.86572 1.58400 1.26933 1.63558 1.21639 1.09420 1.34347
0.96060 0.92667 1.25025 0.96791 0.94677 0.96138 1.70076 1.38286
1.39691 1.01225 0.86673 0.83518 0.80210 0.77951 1.20490 1.21130
1.19898 1.74024 0.97531 1.13269 1.26601 1.84775 1.10471 1.32350
1.69191 0.89473 0.89867 0.88888 0.79240 0.74484 0.91919 0.86309
0.96923 0.90376 0.91562 0.91166 0.95086 0.81336 0.92940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.44 10.45 36.01 0.38 -0.06 16
2 C -0.03 -0.33 7.48 -35.37 -0.26 -0.59 16
3 C -0.22 -3.02 9.79 -39.20 -0.38 -3.40 16
4 C 0.26 3.70 8.18 -154.82 -1.27 2.44 16
5 N -0.64 -8.58 5.42 -11.43 -0.06 -8.64 16
6 C 0.53 8.13 7.53 -10.99 -0.08 8.05 16
7 O -0.49 -8.71 11.59 5.56 0.06 -8.64 16
8 C 0.04 0.67 5.30 -4.98 -0.03 0.64 16
9 N -0.51 -9.19 4.35 -244.37 -1.06 -10.26 16
10 C 0.02 0.28 9.19 60.07 0.55 0.83 16
11 C 0.03 0.59 4.57 -3.83 -0.02 0.57 16
12 C 0.24 5.79 2.84 -27.88 -0.08 5.71 16
13 H 0.05 1.35 6.56 -51.93 -0.34 1.01 16
14 O -0.55 -14.37 12.62 -35.23 -0.44 -14.81 16
15 C -0.58 -15.33 8.76 -34.44 -0.30 -15.64 16
16 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16
17 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16
18 N -0.86 -25.01 12.84 55.43 0.71 -24.29 16
19 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16
20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16
23 N -0.40 -5.71 12.10 31.20 0.38 -5.34 16
24 O 0.09 1.17 11.19 17.04 0.19 1.36 16
25 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16
26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.19 2.66 6.22 -52.49 -0.33 2.34 16
29 H 0.42 4.48 8.82 -40.82 -0.36 4.12 16
30 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16
31 H 0.12 1.96 6.38 -51.93 -0.33 1.63 16
32 H 0.01 0.17 8.12 -51.93 -0.42 -0.25 16
33 H 0.08 1.22 5.92 -51.93 -0.31 0.92 16
34 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16
35 H 0.07 1.35 7.87 -51.93 -0.41 0.94 16
36 H 0.03 0.58 8.05 -51.93 -0.42 0.17 16
37 H 0.34 8.04 9.04 45.56 0.41 8.45 16
38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16
LS Contribution 323.97 15.07 4.88 4.88
Total: -1.00 -33.23 323.97 -6.10 -39.33
By element:
Atomic # 1 Polarization: 14.14 SS G_CDS: -4.15 Total: 10.00 kcal
Atomic # 6 Polarization: 2.25 SS G_CDS: -1.59 Total: 0.66 kcal
Atomic # 7 Polarization: -48.49 SS G_CDS: -0.04 Total: -48.53 kcal
Atomic # 8 Polarization: -21.91 SS G_CDS: -0.19 Total: -22.10 kcal
Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -33.23 -6.10 -39.33 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000809572877.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.844 kcal
(2) G-P(sol) polarization free energy of solvation -33.235 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.610 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.490 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds