Wall clock time and date at job start Tue Mar 31 2020 02:29:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.35240 * 126.69461 * 2 1
4 4 C 1.42027 * 103.95661 * 179.97438 * 3 2 1
5 5 N 1.39505 * 126.89147 * 179.97438 * 4 3 2
6 6 C 1.34771 * 120.00326 * 0.02562 * 5 4 3
7 7 O 1.21276 * 120.00195 * 359.97438 * 6 5 4
8 8 C 1.50700 * 120.00166 * 179.97438 * 6 5 4
9 9 N 1.46897 * 109.47465 * 179.97438 * 8 6 5
10 10 C 1.46905 * 110.99828 * 293.95812 * 9 8 6
11 11 C 1.46897 * 111.00290 * 169.99788 * 9 8 6
12 12 C 1.53000 * 109.47303 * 287.96786 * 11 9 8
13 13 H 1.09003 * 109.47048 * 58.51148 * 12 11 9
14 14 O 1.42901 * 109.47204 * 298.50941 * 12 11 9
15 15 C 1.50701 * 109.46913 * 178.50712 * 12 11 9
16 16 H 1.07997 * 119.99976 * 0.02562 * 15 12 11
17 17 C 1.37880 * 119.99692 * 180.02562 * 15 12 11
18 18 N 1.31512 * 120.00098 * 0.02562 * 17 15 12
19 19 Si 1.86796 * 119.99593 * 180.02562 * 17 15 12
20 20 H 1.48497 * 109.47293 * 90.00155 * 19 17 15
21 21 H 1.48506 * 109.46707 * 209.99696 * 19 17 15
22 22 H 1.48496 * 109.47657 * 329.99819 * 19 17 15
23 23 N 1.30721 * 106.21057 * 0.24381 * 4 3 2
24 24 O 1.20916 * 111.47601 * 359.57166 * 23 4 3
25 25 H 1.09002 * 109.46574 * 90.00118 * 1 2 3
26 26 H 1.09004 * 109.46953 * 209.99773 * 1 2 3
27 27 H 1.08991 * 109.47010 * 329.99837 * 1 2 3
28 28 H 1.07997 * 128.02407 * 359.94806 * 3 2 1
29 29 H 0.97003 * 119.99304 * 180.02562 * 5 4 3
30 30 H 1.09005 * 109.47130 * 59.99782 * 8 6 5
31 31 H 1.08998 * 109.47057 * 300.00223 * 8 6 5
32 32 H 1.08995 * 109.46919 * 302.02581 * 10 9 8
33 33 H 1.08994 * 109.47109 * 62.03152 * 10 9 8
34 34 H 1.09002 * 109.46663 * 182.02767 * 10 9 8
35 35 H 1.09000 * 109.47058 * 167.96621 * 11 9 8
36 36 H 1.08998 * 109.46527 * 47.96960 * 11 9 8
37 37 H 0.96699 * 113.99508 * 300.00466 * 14 12 11
38 38 H 0.96995 * 120.00245 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3152 1.0844 0.0000
4 6 3.6251 0.5354 0.0006
5 7 4.8287 1.2408 0.0004
6 6 4.8201 2.5884 0.0000
7 8 3.7659 3.1881 -0.0006
8 6 6.1203 3.3503 0.0003
9 7 5.8426 4.7928 -0.0009
10 6 5.1971 5.2037 -1.2549
11 6 7.0692 5.5652 0.2376
12 6 7.4929 5.4111 1.6996
13 1 7.6530 4.3561 1.9222
14 8 6.4668 5.9270 2.5499
15 6 8.7712 6.1737 1.9352
16 1 9.2347 6.7145 1.1234
17 6 9.3489 6.1809 3.1871
18 7 8.7846 5.5218 4.1755
19 14 10.9329 7.1267 3.4793
20 1 10.6108 8.5162 3.8925
21 1 11.7166 6.4607 4.5506
22 1 11.7307 7.1551 2.2271
23 7 3.4765 -0.7633 -0.0044
24 8 2.3083 -1.0752 0.0005
25 1 -0.3632 0.0000 -1.0277
26 1 -0.3633 -0.8900 0.5138
27 1 -0.3633 0.8899 0.5138
28 1 2.0305 2.1262 -0.0008
29 1 5.6718 0.7611 0.0005
30 1 6.6939 3.0904 -0.8894
31 1 6.6932 3.0909 0.8905
32 1 5.8379 4.9408 -2.0965
33 1 4.2390 4.6936 -1.3544
34 1 5.0354 6.2816 -1.2441
35 1 6.8835 6.6175 0.0221
36 1 7.8630 5.1959 -0.4117
37 1 6.2711 6.8631 2.4066
38 1 9.1908 5.5271 5.0563
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000809572877.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:29:40
Heat of formation + Delta-G solvation = -31.486650 kcal
Electronic energy + Delta-G solvation = -22172.864337 eV
Core-core repulsion = 18632.572759 eV
Total energy + Delta-G solvation = -3540.291579 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.136 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-45.92818 -41.33020 -38.76444 -36.88507 -36.24053 -34.57283 -34.18757 -33.21156
-30.62772 -29.47971 -28.65429 -27.31443 -25.08089 -24.15065 -22.75222 -21.89338
-21.38628 -19.08009 -18.76174 -18.42807 -18.12378 -17.68444 -16.88499 -16.62619
-16.49784 -16.15830 -15.53147 -15.24037 -15.12397 -14.70735 -14.36264 -14.23265
-13.96685 -13.93520 -13.31908 -13.24449 -13.12313 -12.87173 -12.81490 -12.67575
-12.49544 -12.31855 -12.23923 -11.95431 -11.16575 -10.89581 -10.68121 -10.40514
-10.08328 -9.93169 -9.12466 -8.10923 -6.36569 0.36138 0.91303 1.37296
1.42499 1.43386 1.53462 1.73753 2.20560 2.40191 3.02868 3.16029
3.25986 3.53134 3.93347 4.06213 4.10257 4.23239 4.32641 4.37132
4.40553 4.53504 4.68270 4.75033 4.77144 4.78262 4.88368 5.04166
5.09396 5.19369 5.32574 5.61060 5.75003 5.88076 6.04934 6.19874
6.20887 6.77134 6.87522 7.25860 7.38059 7.65773 8.93280
Molecular weight = 283.14amu
Principal moments of inertia in cm(-1)
A = 0.030230 B = 0.003303 C = 0.003179
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 926.002658 B = 8474.476617 C = 8805.185641
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C -0.005 4.005
3 C -0.255 4.255
4 C 0.236 3.764
5 N -0.629 5.629
6 C 0.531 3.469
7 O -0.518 6.518
8 C 0.045 3.955
9 N -0.536 5.536
10 C 0.025 3.975
11 C 0.050 3.950
12 C 0.234 3.766
13 H 0.025 0.975
14 O -0.573 6.573
15 C -0.585 4.585
16 H 0.062 0.938
17 C 0.026 3.974
18 N -0.900 5.900
19 Si 0.958 3.042
20 H -0.275 1.275
21 H -0.286 1.286
22 H -0.263 1.263
23 N -0.413 5.413
24 O 0.091 5.909
25 H 0.109 0.891
26 H 0.103 0.897
27 H 0.103 0.897
28 H 0.182 0.818
29 H 0.430 0.570
30 H 0.095 0.905
31 H 0.104 0.896
32 H 0.032 0.968
33 H 0.073 0.927
34 H 0.070 0.930
35 H 0.075 0.925
36 H 0.042 0.958
37 H 0.352 0.648
38 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.532 -9.256 -12.024 19.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.069 4.069
3 C -0.278 4.278
4 C -0.013 4.013
5 N -0.283 5.283
6 C 0.319 3.681
7 O -0.391 6.391
8 C -0.087 4.087
9 N -0.260 5.260
10 C -0.123 4.123
11 C -0.078 4.078
12 C 0.176 3.824
13 H 0.043 0.957
14 O -0.376 6.376
15 C -0.623 4.623
16 H 0.080 0.920
17 C -0.177 4.177
18 N -0.537 5.537
19 Si 0.783 3.217
20 H -0.201 1.201
21 H -0.212 1.212
22 H -0.187 1.187
23 N -0.131 5.131
24 O 0.032 5.968
25 H 0.127 0.873
26 H 0.122 0.878
27 H 0.122 0.878
28 H 0.199 0.801
29 H 0.268 0.732
30 H 0.113 0.887
31 H 0.122 0.878
32 H 0.051 0.949
33 H 0.091 0.909
34 H 0.089 0.911
35 H 0.093 0.907
36 H 0.060 0.940
37 H 0.196 0.804
38 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -12.766 -10.376 -11.260 19.935
hybrid contribution 1.832 1.336 -0.278 2.284
sum -10.934 -9.040 -11.538 18.286
Atomic orbital electron populations
1.20619 0.80195 1.06213 1.05848 1.25171 0.98090 0.84475 0.99182
1.22779 0.89576 1.02525 1.12942 1.20856 0.89360 0.89121 1.01946
1.42576 1.06477 1.06290 1.72909 1.21036 0.92432 0.80455 0.74201
1.90580 1.33525 1.68073 1.46917 1.21937 0.92514 0.89433 1.04766
1.61511 1.26715 1.01742 1.36060 1.22523 0.99410 1.01878 0.88496
1.22777 0.88859 0.97561 0.98582 1.19257 0.84787 0.93636 0.84713
0.95745 1.86523 1.58764 1.27718 1.64638 1.22056 1.10138 1.33928
0.96211 0.91965 1.25880 1.00142 0.95616 0.96031 1.70222 1.40184
1.41627 1.01659 0.85583 0.79437 0.78643 0.78025 1.20081 1.21189
1.18706 1.74014 0.98484 1.13179 1.27425 1.84743 1.10274 1.32895
1.68911 0.87260 0.87847 0.87795 0.80128 0.73181 0.88715 0.87811
0.94937 0.90851 0.91108 0.90666 0.94029 0.80387 0.93121
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.68 10.45 71.24 0.74 0.06 16
2 C -0.01 -0.11 7.48 25.00 0.19 0.08 16
3 C -0.26 -6.81 9.79 22.52 0.22 -6.59 16
4 C 0.24 6.84 8.18 134.11 1.10 7.94 16
5 N -0.63 -16.90 5.42 -309.51 -1.68 -18.58 16
6 C 0.53 16.34 7.53 87.66 0.66 17.00 16
7 O -0.52 -18.45 11.59 -3.02 -0.03 -18.48 16
8 C 0.04 1.36 5.30 85.56 0.45 1.81 16
9 N -0.54 -18.77 4.35 -927.06 -4.03 -22.80 16
10 C 0.02 0.71 9.19 127.69 1.17 1.88 16
11 C 0.05 1.90 4.57 86.30 0.39 2.30 16
12 C 0.23 11.53 2.84 29.85 0.08 11.62 16
13 H 0.02 1.34 6.56 -2.39 -0.02 1.32 16
14 O -0.57 -30.27 12.62 -148.98 -1.88 -32.15 16
15 C -0.59 -30.96 8.76 25.60 0.22 -30.74 16
16 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16
17 C 0.03 1.41 5.40 84.66 0.46 1.87 16
18 N -0.90 -53.31 12.84 21.45 0.28 -53.04 16
19 Si 0.96 42.48 29.54 68.60 2.03 44.51 16
20 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16
21 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16
22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16
23 N -0.41 -11.74 12.10 -56.30 -0.68 -12.43 16
24 O 0.09 2.21 11.19 71.16 0.80 3.01 16
25 H 0.11 0.65 8.14 -2.39 -0.02 0.64 16
26 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16
27 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16
28 H 0.18 5.16 6.22 -2.91 -0.02 5.14 16
29 H 0.43 9.15 8.82 -92.71 -0.82 8.33 16
30 H 0.10 2.25 8.11 -2.38 -0.02 2.23 16
31 H 0.10 3.49 6.38 -2.39 -0.02 3.48 16
32 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16
33 H 0.07 2.23 5.92 -2.39 -0.01 2.21 16
34 H 0.07 1.96 7.96 -2.39 -0.02 1.94 16
35 H 0.07 2.79 7.87 -2.39 -0.02 2.77 16
36 H 0.04 1.49 8.05 -2.39 -0.02 1.47 16
37 H 0.35 16.68 9.04 -74.06 -0.67 16.01 16
38 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16
Total: -1.00 -71.59 323.97 0.11 -71.48
By element:
Atomic # 1 Polarization: 31.62 SS G_CDS: -0.38 Total: 31.25 kcal
Atomic # 6 Polarization: 1.53 SS G_CDS: 5.69 Total: 7.22 kcal
Atomic # 7 Polarization: -100.72 SS G_CDS: -6.12 Total: -106.84 kcal
Atomic # 8 Polarization: -46.50 SS G_CDS: -1.12 Total: -47.62 kcal
Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal
Total: -71.59 0.11 -71.48 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000809572877.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.992 kcal
(2) G-P(sol) polarization free energy of solvation -71.588 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.596 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.479 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.487 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds