Wall clock time and date at job start Tue Mar 31 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46897 * 2 1 4 4 C 1.50695 * 109.47104 * 240.00274 * 2 1 3 5 5 O 1.20827 * 120.00110 * 239.99819 * 4 2 1 6 6 O 1.34232 * 120.00417 * 59.99728 * 4 2 1 7 7 C 1.45193 * 117.00295 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47176 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47210 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47056 * 179.97438 * 9 8 7 11 11 H 1.07993 * 119.99911 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99754 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00234 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99687 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46906 * 90.00024 * 14 12 10 16 16 H 1.48495 * 109.47054 * 209.99909 * 14 12 10 17 17 H 1.48492 * 109.47529 * 330.00198 * 14 12 10 18 18 N 1.46501 * 109.47232 * 119.99957 * 2 1 3 19 19 C 1.33878 * 122.76150 * 239.99988 * 18 2 1 20 20 O 1.21224 * 125.39650 * 359.97438 * 19 18 2 21 21 C 1.51313 * 109.20530 * 180.02562 * 19 18 2 22 22 C 1.54227 * 103.69342 * 359.92201 * 21 19 18 23 23 C 1.33871 * 122.75948 * 60.00070 * 18 2 1 24 24 O 1.21229 * 125.40167 * 0.02562 * 23 18 2 25 25 H 1.09000 * 109.46897 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46952 * 299.99446 * 1 2 3 27 27 H 1.08993 * 109.47489 * 59.99938 * 1 2 3 28 28 H 1.09004 * 109.46915 * 299.99753 * 7 6 4 29 29 H 1.09000 * 109.47504 * 60.00170 * 7 6 4 30 30 H 1.09004 * 109.46783 * 299.99571 * 8 7 6 31 31 H 1.08996 * 109.47672 * 59.99407 * 8 7 6 32 32 H 1.09004 * 109.46925 * 299.99518 * 9 8 7 33 33 H 1.08997 * 109.47004 * 59.99665 * 9 8 7 34 34 H 0.96998 * 120.00055 * 180.02562 * 13 12 10 35 35 H 1.09002 * 110.60607 * 118.51938 * 21 19 18 36 36 H 1.09002 * 110.60509 * 241.32619 * 21 19 18 37 37 H 1.09007 * 110.60335 * 118.59605 * 22 21 19 38 38 H 1.09001 * 110.61059 * 241.55663 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7270 -1.6927 -1.1197 6 8 1.7081 -0.2518 -2.4496 7 6 2.2267 -0.9862 -3.5896 8 6 1.7557 -0.3189 -4.8834 9 6 2.3028 -1.0925 -6.0847 10 6 1.8384 -0.4356 -7.3590 11 1 1.2150 0.4452 -7.3163 12 6 2.2093 -0.9592 -8.5794 13 7 2.9680 -2.0321 -8.6314 14 14 1.6330 -0.1453 -10.1589 15 1 2.6229 0.8796 -10.5773 16 1 1.5017 -1.1708 -11.2248 17 1 0.3165 0.5024 -9.9303 18 7 2.0184 -0.6906 1.1962 19 6 2.7906 -0.0939 2.1127 20 8 3.1711 1.0562 2.0690 21 6 3.1143 -1.0831 3.2110 22 6 2.3871 -2.3696 2.7697 23 6 1.7292 -1.9702 1.4627 24 8 1.0488 -2.6955 0.7694 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 3.3163 -0.9859 -3.5569 29 1 1.8625 -2.0131 -3.5566 30 1 0.6662 -0.3189 -4.9164 31 1 2.1202 0.7078 -4.9163 32 1 3.3924 -1.0921 -6.0516 33 1 1.9387 -2.1193 -6.0521 34 1 3.2293 -2.4002 -9.4899 35 1 4.1895 -1.2515 3.2710 36 1 2.7280 -0.7332 4.1684 37 1 3.1007 -3.1780 2.6101 38 1 1.6372 -2.6584 3.5062 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919257884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:48 Heat of formation + Delta-G solvation = -183.809248 kcal Electronic energy + Delta-G solvation = -22115.155708 eV Core-core repulsion = 18535.966175 eV Total energy + Delta-G solvation = -3579.189533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.21991 -41.45219 -39.70145 -38.05266 -37.01745 -36.02338 -35.46714 -33.72197 -31.50854 -29.10248 -27.12225 -26.42530 -25.09352 -23.48693 -22.69984 -22.24429 -20.37776 -19.02503 -18.76151 -18.44568 -17.93711 -17.82089 -17.44681 -16.77320 -16.51294 -15.88916 -15.77761 -15.32464 -14.98401 -14.89298 -14.69267 -14.27626 -14.09897 -13.94122 -13.84065 -13.50964 -13.36770 -13.05696 -12.85045 -12.55201 -12.45231 -12.16850 -12.10593 -11.96025 -11.63897 -11.56765 -11.50730 -11.31097 -11.09305 -10.99315 -10.60023 -8.24201 -6.36225 0.48631 0.87596 0.95660 1.40179 1.41869 1.52826 1.54430 1.84192 2.39545 3.09694 3.11981 3.22901 3.34652 3.61249 3.64162 3.75861 3.90564 3.96005 4.03240 4.18546 4.31214 4.52806 4.65021 4.72894 4.75381 4.77706 4.89903 4.92291 5.00075 5.01497 5.25730 5.45046 5.58559 5.70772 5.76564 6.15220 6.26767 6.40013 6.68100 6.79478 7.33534 8.88204 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.038280 B = 0.002882 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.285731 B = 9714.341552 C = 9870.207939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.154 0.846 4 C 0.448 3.552 5 O -0.527 6.527 6 O -0.348 6.348 7 C 0.079 3.921 8 C -0.092 4.092 9 C 0.026 3.974 10 C -0.544 4.544 11 H 0.067 0.933 12 C -0.002 4.002 13 N -0.934 5.934 14 Si 0.971 3.029 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.261 1.261 18 N -0.571 5.571 19 C 0.524 3.476 20 O -0.518 6.518 21 C -0.137 4.137 22 C -0.139 4.139 23 C 0.516 3.484 24 O -0.513 6.513 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.070 0.930 32 H -0.004 1.004 33 H -0.005 1.005 34 H 0.265 0.735 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.135 0.865 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.969 3.228 28.937 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.031 3.969 3 H 0.172 0.828 4 C 0.290 3.710 5 O -0.416 6.416 6 O -0.263 6.263 7 C 0.006 3.994 8 C -0.130 4.130 9 C -0.011 4.011 10 C -0.582 4.582 11 H 0.085 0.915 12 C -0.200 4.200 13 N -0.574 5.574 14 Si 0.795 3.205 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.185 1.185 18 N -0.316 5.316 19 C 0.317 3.683 20 O -0.391 6.391 21 C -0.175 4.175 22 C -0.178 4.178 23 C 0.308 3.692 24 O -0.386 6.386 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.015 0.985 33 H 0.014 0.986 34 H 0.074 0.926 35 H 0.161 0.839 36 H 0.177 0.823 37 H 0.153 0.847 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.850 3.038 28.399 28.703 hybrid contribution 0.158 -0.117 -1.612 1.624 sum -2.691 2.921 26.787 27.079 Atomic orbital electron populations 1.22096 0.88410 1.04252 1.06246 1.20933 0.98890 0.97808 0.79252 0.82841 1.24303 0.77416 0.83003 0.86229 1.90652 1.36690 1.26672 1.87590 1.86445 1.69517 1.55617 1.14752 1.23189 0.98470 0.95126 0.82614 1.21469 1.01375 0.99958 0.90200 1.18933 0.95107 0.94775 0.92290 1.21615 1.31932 1.12882 0.91746 0.91528 1.26037 0.95048 0.95524 1.03367 1.70103 1.37395 1.23324 1.26610 0.85360 0.79175 0.78083 0.77918 1.19649 1.20779 1.18474 1.46972 1.48031 1.15171 1.21410 1.21834 0.74443 0.88245 0.83815 1.90781 1.52157 1.18651 1.77550 1.22612 1.05981 0.90871 0.98076 1.22670 1.02641 1.00032 0.92444 1.21980 0.78567 0.79647 0.88985 1.90767 1.37841 1.55165 1.54833 0.92053 0.87842 0.88322 0.91917 0.92250 0.91247 0.91143 0.98532 0.98631 0.92636 0.83901 0.82313 0.84658 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.10 71.98 0.66 -2.22 16 2 C 0.14 3.16 3.22 44.24 0.14 3.30 16 3 H 0.15 3.16 7.41 -2.39 -0.02 3.14 16 4 C 0.45 14.63 6.89 71.23 0.49 15.12 16 5 O -0.53 -20.30 14.55 27.46 0.40 -19.90 16 6 O -0.35 -12.01 10.12 -51.43 -0.52 -12.53 16 7 C 0.08 3.12 5.47 71.98 0.39 3.51 16 8 C -0.09 -3.94 5.53 30.60 0.17 -3.77 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 11 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 12 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 13 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 14 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 18 N -0.57 -11.62 2.28 -737.68 -1.68 -13.30 16 19 C 0.52 8.64 8.08 87.99 0.71 9.35 16 20 O -0.52 -11.99 17.23 -2.86 -0.05 -12.04 16 21 C -0.14 -0.62 7.02 30.46 0.21 -0.41 16 22 C -0.14 -0.91 7.05 30.58 0.22 -0.70 16 23 C 0.52 10.45 6.71 88.11 0.59 11.04 16 24 O -0.51 -15.21 15.12 12.68 0.19 -15.02 16 25 H 0.06 1.41 6.64 -2.39 -0.02 1.40 16 26 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.10 1.76 8.11 -2.39 -0.02 1.74 16 28 H 0.06 2.50 8.13 -2.39 -0.02 2.48 16 29 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 30 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.16 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.14 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.16 0.05 8.14 -2.39 -0.02 0.03 16 Total: -1.00 -81.16 329.83 6.14 -75.02 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.06 Total: 2.44 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 4.43 Total: 6.17 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.40 Total: -70.60 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: 0.02 Total: -59.49 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -81.16 6.14 -75.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919257884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.787 kcal (2) G-P(sol) polarization free energy of solvation -81.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds