Wall clock time and date at job start Tue Mar 31 2020 02:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47195 * 2 1 4 4 H 1.09002 * 109.47121 * 305.00605 * 3 2 1 5 5 C 1.52994 * 109.47424 * 184.99950 * 3 2 1 6 6 N 1.46505 * 109.46986 * 65.00133 * 3 2 1 7 7 C 1.47309 * 126.69129 * 240.16275 * 6 3 2 8 8 C 1.51585 * 103.59522 * 180.26666 * 7 6 3 9 9 O 1.21226 * 127.16083 * 179.73258 * 8 7 6 10 10 N 1.34766 * 105.68054 * 359.76270 * 8 7 6 11 11 C 1.46500 * 124.17741 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47301 * 269.96455 * 11 10 8 13 13 O 1.21288 * 120.00120 * 359.97438 * 12 11 10 14 14 N 1.34784 * 120.00069 * 180.02562 * 12 11 10 15 15 C 1.37097 * 120.00350 * 180.02562 * 14 12 11 16 16 H 1.08006 * 119.99489 * 359.97438 * 15 14 12 17 17 C 1.38945 * 120.00236 * 179.97438 * 15 14 12 18 18 N 1.31411 * 120.00144 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00079 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47010 * 89.99687 * 19 17 15 21 21 H 1.48493 * 109.46972 * 209.99714 * 19 17 15 22 22 H 1.48498 * 109.46823 * 329.99935 * 19 17 15 23 23 C 1.33791 * 111.64749 * 0.02562 * 10 8 7 24 24 O 1.21543 * 123.77173 * 179.97438 * 23 10 8 25 25 H 1.09000 * 109.47501 * 59.99492 * 1 2 3 26 26 H 1.09003 * 109.47331 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46792 * 299.99803 * 1 2 3 28 28 H 1.09005 * 109.46792 * 240.00197 * 2 1 3 29 29 H 1.08993 * 109.46854 * 120.00440 * 2 1 3 30 30 H 1.08995 * 109.47255 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.47051 * 300.00698 * 5 3 2 32 32 H 1.09003 * 109.47097 * 60.00126 * 5 3 2 33 33 H 1.08998 * 110.80263 * 61.64125 * 7 6 3 34 34 H 1.09007 * 110.52940 * 298.75553 * 7 6 3 35 35 H 1.08999 * 109.47092 * 29.96392 * 11 10 8 36 36 H 1.09005 * 109.47157 * 149.96292 * 11 10 8 37 37 H 0.97002 * 119.99327 * 359.97438 * 14 12 11 38 38 H 0.96998 * 120.00192 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6525 2.0974 1.2519 7 6 0.8069 3.2953 1.3934 8 6 0.7520 3.5177 2.8919 9 8 0.1671 4.4017 3.4800 10 7 1.4895 2.5286 3.4341 11 6 1.7076 2.3587 4.8728 12 6 2.9406 3.1196 5.2872 13 8 3.5750 3.7422 4.4620 14 7 3.3390 3.1075 6.5748 15 6 4.4604 3.8001 6.9520 16 1 5.0248 4.3552 6.2172 17 6 4.8708 3.7880 8.2794 18 7 5.9459 4.4516 8.6408 19 14 3.8950 2.8274 9.5500 20 1 4.4210 1.4413 9.6338 21 1 4.0233 3.4865 10.8745 22 1 2.4649 2.7909 9.1517 23 6 1.9977 1.7209 2.4964 24 8 2.6972 0.7576 2.7412 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9281 2.4720 -0.1262 31 1 3.9994 0.9052 0.7161 32 1 3.8532 0.9571 -1.0571 33 1 -0.1917 3.1134 0.9960 34 1 1.2669 4.1490 0.8957 35 1 0.8447 2.7401 5.4187 36 1 1.8411 1.3004 5.0976 37 1 2.8318 2.6092 7.2347 38 1 6.2326 4.4428 9.5674 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925366057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:09 Heat of formation + Delta-G solvation = -71.376172 kcal Electronic energy + Delta-G solvation = -23064.293623 eV Core-core repulsion = 19522.272305 eV Total energy + Delta-G solvation = -3542.021318 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.22137 -38.70120 -38.28375 -36.71366 -35.69428 -34.09856 -33.23623 -31.72479 -30.43939 -28.29740 -27.35237 -24.70287 -23.98515 -22.67038 -21.92306 -19.81247 -19.24271 -18.53967 -17.37769 -17.01546 -16.39245 -15.82437 -15.78464 -15.18403 -14.81338 -14.48802 -14.10364 -14.07354 -13.95735 -13.68150 -13.51217 -13.40390 -13.07263 -12.64063 -12.40044 -12.18422 -12.01185 -11.84918 -11.52086 -11.24043 -11.20983 -11.17367 -10.61839 -10.49700 -10.05957 -9.94724 -9.85509 -9.62440 -8.98965 -8.52461 -8.23241 -6.33889 -3.85881 1.81799 2.12640 2.96785 3.02530 3.07232 3.15354 3.24631 3.61676 4.08416 4.09285 4.42780 4.58188 4.75316 4.82646 4.91633 5.01864 5.10319 5.14480 5.31934 5.36826 5.43455 5.46477 5.51760 5.60196 5.70032 5.74759 5.84649 5.87510 5.98261 6.13052 6.30934 6.54544 7.29605 7.48924 7.54396 8.07181 8.26198 8.53164 8.89397 9.36243 9.71729 10.78762 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.026673 B = 0.004387 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.508504 B = 6380.573820 C = 6589.618993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.184 3.816 4 H 0.095 0.905 5 C -0.172 4.172 6 N -0.624 5.624 7 C 0.066 3.934 8 C 0.527 3.473 9 O -0.472 6.472 10 N -0.554 5.554 11 C 0.105 3.895 12 C 0.436 3.564 13 O -0.569 6.569 14 N -0.579 5.579 15 C -0.306 4.306 16 H 0.120 0.880 17 C 0.044 3.956 18 N -0.877 5.877 19 Si 0.880 3.120 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.268 1.268 23 C 0.709 3.291 24 O -0.537 6.537 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.372 0.628 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.507 -8.400 -16.416 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.083 3.917 4 H 0.113 0.887 5 C -0.230 4.230 6 N -0.364 5.364 7 C -0.060 4.060 8 C 0.314 3.686 9 O -0.342 6.342 10 N -0.298 5.298 11 C -0.021 4.021 12 C 0.220 3.780 13 O -0.451 6.451 14 N -0.218 5.218 15 C -0.434 4.434 16 H 0.137 0.863 17 C -0.160 4.160 18 N -0.517 5.517 19 Si 0.706 3.294 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.193 1.193 23 C 0.412 3.588 24 O -0.410 6.410 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.205 0.795 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.804 -8.022 -16.385 22.288 hybrid contribution -0.564 -0.539 1.254 1.477 sum -13.368 -8.560 -15.130 21.929 Atomic orbital electron populations 1.21732 0.95611 1.01710 1.01522 1.22013 0.96311 0.96017 1.03886 1.20938 0.95620 0.92895 0.82295 0.88731 1.22230 0.94458 1.03140 1.03195 1.47711 1.53491 1.29763 1.05390 1.22451 0.98187 0.90690 0.94649 1.20764 0.77377 0.80408 0.90045 1.90800 1.42596 1.31359 1.69412 1.45800 1.47485 1.28158 1.08340 1.21407 0.99762 1.03212 0.77682 1.19806 0.87812 0.86733 0.83607 1.90571 1.57141 1.46586 1.50834 1.42099 1.26258 1.46269 1.07188 1.19421 1.01556 1.26986 0.95462 0.86261 1.25044 0.96454 0.97366 0.97104 1.69619 1.22981 1.40636 1.18431 0.86662 0.80024 0.80748 0.81972 1.19422 1.20033 1.19330 1.15730 0.79732 0.82474 0.80864 1.90933 1.39230 1.28315 1.82503 0.92825 0.92651 0.92956 0.90513 0.89944 0.92009 0.90580 0.91238 0.86486 0.86260 0.87179 0.86982 0.79456 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.80 37.16 0.36 -0.76 16 2 C -0.14 -1.27 5.39 -26.73 -0.14 -1.41 16 3 C 0.18 1.71 2.97 -67.93 -0.20 1.51 16 4 H 0.09 0.60 8.12 -51.93 -0.42 0.17 16 5 C -0.17 -1.82 9.23 37.15 0.34 -1.48 16 6 N -0.62 -7.54 2.34 -172.39 -0.40 -7.94 16 7 C 0.07 0.68 7.65 -4.32 -0.03 0.65 16 8 C 0.53 8.12 8.32 -10.55 -0.09 8.03 16 9 O -0.47 -8.52 17.76 5.60 0.10 -8.42 16 10 N -0.55 -9.43 2.09 -122.02 -0.26 -9.69 16 11 C 0.10 1.86 6.18 -5.20 -0.03 1.83 16 12 C 0.44 10.38 7.85 -10.98 -0.09 10.29 16 13 O -0.57 -15.92 16.01 5.55 0.09 -15.83 16 14 N -0.58 -14.20 5.09 -10.96 -0.06 -14.26 16 15 C -0.31 -8.83 10.16 -14.94 -0.15 -8.98 16 16 H 0.12 3.94 7.39 -52.48 -0.39 3.55 16 17 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 18 N -0.88 -25.84 13.96 55.50 0.77 -25.06 16 19 Si 0.88 19.50 27.74 -169.99 -4.72 14.79 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.27 -5.38 6.52 56.52 0.37 -5.02 16 23 C 0.71 11.71 7.77 -88.02 -0.68 11.03 16 24 O -0.54 -10.34 14.83 5.33 0.08 -10.26 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.45 7.75 -51.93 -0.40 0.05 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.97 6.81 -51.93 -0.35 0.62 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.06 6.96 -51.93 -0.36 0.70 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.12 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.11 1.67 8.00 -51.93 -0.42 1.26 16 36 H 0.11 1.76 7.86 -51.93 -0.41 1.35 16 37 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -36.84 325.30 -5.41 -42.24 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.11 Total: 7.68 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: -0.81 Total: 21.85 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.06 Total: -56.95 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: 0.27 Total: -34.51 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.72 Total: 14.79 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.84 -5.41 -42.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925366057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.132 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds