Wall clock time and date at job start Tue Mar 31 2020 02:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46825 * 2 1 4 4 N 1.46504 * 109.46654 * 180.02562 * 3 2 1 5 5 C 1.34523 * 126.68575 * 89.98258 * 4 3 2 6 6 O 1.21531 * 123.77675 * 0.02949 * 5 4 3 7 7 N 1.33795 * 112.45569 * 180.02562 * 5 4 3 8 8 C 1.46497 * 124.17849 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47300 * 269.95780 * 8 7 5 10 10 O 1.21294 * 120.00202 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00169 * 179.97438 * 9 8 7 12 12 C 1.37105 * 120.00122 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99624 * 0.02562 * 12 11 9 14 14 C 1.38952 * 119.99979 * 180.02562 * 12 11 9 15 15 N 1.31410 * 120.00131 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99864 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47046 * 59.99676 * 16 14 12 18 18 H 1.48492 * 109.47164 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47104 * 299.99706 * 16 14 12 20 20 C 1.34773 * 111.64536 * 359.97438 * 7 5 4 21 21 O 1.21233 * 127.15617 * 179.97438 * 20 7 5 22 22 C 1.47308 * 126.69390 * 270.29530 * 4 3 2 23 23 H 1.09002 * 110.50179 * 298.56348 * 22 4 3 24 24 C 1.52998 * 110.69860 * 61.50409 * 22 4 3 25 25 H 1.08993 * 109.47574 * 59.99951 * 1 2 3 26 26 H 1.09000 * 109.46631 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46768 * 299.99571 * 1 2 3 28 28 H 1.09001 * 109.46768 * 240.00429 * 2 1 3 29 29 H 1.08998 * 109.47492 * 120.00534 * 2 1 3 30 30 H 1.09001 * 109.47098 * 60.00631 * 3 2 1 31 31 H 1.08993 * 109.47085 * 300.00349 * 3 2 1 32 32 H 1.09003 * 109.47604 * 29.95976 * 8 7 5 33 33 H 1.09002 * 109.47504 * 149.95753 * 8 7 5 34 34 H 0.96997 * 120.00077 * 0.02562 * 11 9 8 35 35 H 0.97002 * 119.99900 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.47577 * 175.68830 * 24 22 4 37 37 H 1.09002 * 109.47579 * 295.68818 * 24 22 4 38 38 H 1.09007 * 109.47152 * 55.68427 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3082 1.4423 -1.0797 6 8 3.9013 1.4427 -2.2249 7 7 5.6053 1.4418 -0.7514 8 6 6.7005 1.4420 -1.7243 9 6 7.0764 0.0213 -2.0580 10 8 6.4870 -0.9008 -1.5349 11 7 8.0667 -0.2248 -2.9383 12 6 8.4083 -1.5174 -3.2423 13 1 7.8835 -2.3383 -2.7765 14 6 9.4297 -1.7710 -4.1496 15 7 10.0679 -0.7721 -4.7167 16 14 9.8947 -3.5321 -4.5642 17 1 8.7191 -4.2313 -5.1425 18 1 11.0046 -3.5319 -5.5506 19 1 10.3294 -4.2331 -3.3293 20 6 5.7798 1.4421 0.5850 21 8 6.8327 1.4413 1.1860 22 6 4.3857 1.4362 1.1802 23 1 4.2227 2.3297 1.7828 24 6 4.1617 0.1739 2.0152 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 6.3810 1.9558 -2.6310 33 1 7.5631 1.9560 -1.3003 34 1 8.5378 0.5125 -3.3570 35 1 10.7807 -0.9492 -5.3503 36 1 4.8745 0.1522 2.8395 37 1 3.1467 0.1765 2.4127 38 1 4.3040 -0.7064 1.3884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925367988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:17 Heat of formation + Delta-G solvation = -80.627855 kcal Electronic energy + Delta-G solvation = -22938.222309 eV Core-core repulsion = 19395.799808 eV Total energy + Delta-G solvation = -3542.422501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.22789 -38.45081 -38.16816 -36.53433 -35.43005 -34.04029 -33.45871 -31.31414 -30.75318 -28.89516 -26.23736 -24.81251 -24.31455 -22.08962 -21.54701 -20.50431 -19.33121 -18.04644 -17.15572 -17.01637 -16.45974 -15.75013 -15.60711 -15.11798 -14.71007 -14.58097 -14.27048 -14.08404 -13.91186 -13.69001 -13.49196 -13.16022 -12.68141 -12.50658 -12.33712 -12.11882 -11.91270 -11.67404 -11.57987 -11.43050 -11.03384 -10.92806 -10.51843 -10.44926 -10.24490 -9.92287 -9.83450 -9.54567 -8.99407 -8.38539 -8.01998 -6.44427 -3.85575 1.85623 2.18720 3.03079 3.19150 3.25520 3.28737 3.31817 3.79698 4.06484 4.17347 4.55108 4.68880 4.80723 4.90717 4.93166 5.07166 5.10894 5.18990 5.38686 5.41290 5.47364 5.51107 5.59086 5.62050 5.75650 5.80882 5.91273 5.97717 6.10027 6.19701 6.21965 6.54940 7.33778 7.52720 7.58453 7.98770 8.30159 8.54465 9.12651 9.46045 9.95861 10.72781 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022147 B = 0.004362 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.972419 B = 6417.886170 C = 6832.329034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C 0.155 3.845 4 N -0.626 5.626 5 C 0.708 3.292 6 O -0.539 6.539 7 N -0.552 5.552 8 C 0.106 3.894 9 C 0.426 3.574 10 O -0.587 6.587 11 N -0.552 5.552 12 C -0.301 4.301 13 H 0.103 0.897 14 C 0.025 3.975 15 N -0.898 5.898 16 Si 0.933 3.067 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 C 0.530 3.470 21 O -0.469 6.469 22 C 0.095 3.905 23 H 0.122 0.878 24 C -0.150 4.150 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.394 0.606 35 H 0.274 0.726 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.489 7.515 11.387 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C 0.034 3.966 4 N -0.365 5.365 5 C 0.410 3.590 6 O -0.412 6.412 7 N -0.295 5.295 8 C -0.019 4.019 9 C 0.211 3.789 10 O -0.472 6.472 11 N -0.188 5.188 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.177 4.177 15 N -0.539 5.539 16 Si 0.760 3.240 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C 0.317 3.683 21 O -0.338 6.338 22 C -0.012 4.012 23 H 0.139 0.861 24 C -0.208 4.208 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.425 6.912 11.222 19.539 hybrid contribution 0.684 -0.483 -0.589 1.024 sum -13.741 6.428 10.633 18.526 Atomic orbital electron populations 1.21681 0.94939 1.02135 1.01796 1.22083 0.96128 0.97114 1.03593 1.21335 0.74496 0.97398 1.03379 1.47719 1.06020 1.77757 1.05047 1.15772 0.80708 0.77200 0.85272 1.90954 1.76859 1.54602 1.18775 1.45790 1.07630 1.67344 1.08752 1.21420 0.88724 0.98857 0.92877 1.19890 0.84538 0.89660 0.84832 1.90526 1.55590 1.45257 1.55861 1.41750 1.30496 1.09154 1.37352 1.19655 1.16277 0.84057 1.23027 0.87928 1.25284 0.96230 0.99810 0.96376 1.69602 1.23694 1.31385 1.29174 0.85885 0.78117 0.81711 0.78328 1.19833 1.20851 1.19826 1.20748 0.91102 0.74261 0.82208 1.90781 1.30788 1.46050 1.66213 1.22053 0.87268 1.02500 0.89368 0.86067 1.21987 1.03104 0.95785 0.99969 0.92441 0.92335 0.92677 0.90961 0.91271 0.89861 0.89408 0.87079 0.87246 0.77209 0.91651 0.90030 0.90644 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.15 -1.48 6.13 -26.73 -0.16 -1.64 16 3 C 0.15 1.49 5.99 -4.04 -0.02 1.46 16 4 N -0.63 -8.17 2.75 -172.41 -0.47 -8.64 16 5 C 0.71 12.59 8.31 -88.02 -0.73 11.86 16 6 O -0.54 -11.27 17.15 5.34 0.09 -11.18 16 7 N -0.55 -10.06 2.09 -122.02 -0.26 -10.31 16 8 C 0.11 2.04 6.18 -5.20 -0.03 2.01 16 9 C 0.43 10.61 7.85 -10.99 -0.09 10.52 16 10 O -0.59 -16.65 16.01 5.55 0.09 -16.56 16 11 N -0.55 -14.41 5.29 -10.96 -0.06 -14.47 16 12 C -0.30 -8.58 9.68 -14.93 -0.14 -8.72 16 13 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 14 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 15 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 16 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.53 8.77 7.65 -10.55 -0.08 8.68 16 21 O -0.47 -8.84 17.76 5.60 0.10 -8.74 16 22 C 0.10 1.12 4.04 -68.21 -0.28 0.84 16 23 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 24 C -0.15 -1.56 8.58 37.16 0.32 -1.24 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.64 6.42 -51.93 -0.33 0.31 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 32 H 0.11 1.94 7.86 -51.93 -0.41 1.53 16 33 H 0.11 1.84 8.00 -51.93 -0.42 1.43 16 34 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.56 7.29 -51.93 -0.38 0.18 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -35.65 330.90 -5.94 -41.59 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.17 Total: 7.25 kcal Atomic # 6 Polarization: 24.59 SS G_CDS: -0.95 Total: 23.64 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.06 Total: -57.32 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: 0.28 Total: -36.48 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.65 -5.94 -41.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925367988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.040 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds