Wall clock time and date at job start Tue Mar 31 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46850 * 2 1 4 4 N 1.46497 * 109.47117 * 240.00060 * 2 1 3 5 5 C 1.34776 * 120.00009 * 85.00086 * 4 2 1 6 6 O 1.21285 * 119.99951 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99903 * 179.97438 * 5 4 2 8 8 H 1.08992 * 110.50443 * 319.30032 * 7 5 4 9 9 C 1.54089 * 110.56419 * 82.04417 * 7 5 4 10 10 O 1.45697 * 104.01283 * 118.71820 * 9 7 5 11 11 C 1.33779 * 109.47318 * 359.97438 * 10 9 7 12 12 O 1.21508 * 123.06778 * 180.02562 * 11 10 9 13 13 N 1.34320 * 113.90408 * 359.91513 * 11 10 9 14 14 C 1.53000 * 109.47018 * 119.99826 * 2 1 3 15 15 C 1.53950 * 113.74310 * 282.06043 * 14 2 1 16 16 N 1.47584 * 86.11501 * 222.04753 * 15 14 2 17 17 C 1.36939 * 134.49502 * 204.63994 * 16 15 14 18 18 H 1.07998 * 120.00126 * 182.73212 * 17 16 15 19 19 C 1.38818 * 119.99410 * 2.73366 * 17 16 15 20 20 N 1.31617 * 120.00327 * 353.41317 * 19 17 16 21 21 Si 1.86797 * 119.99547 * 173.40717 * 19 17 16 22 22 H 1.48499 * 109.47225 * 94.97575 * 21 19 17 23 23 H 1.48500 * 109.47205 * 214.97393 * 21 19 17 24 24 H 1.48507 * 109.47438 * 334.97281 * 21 19 17 25 25 C 1.47582 * 91.01491 * 24.63833 * 16 15 14 26 26 H 1.08991 * 109.47532 * 184.48693 * 1 2 3 27 27 H 1.09001 * 109.47304 * 304.48844 * 1 2 3 28 28 H 1.09001 * 109.47021 * 64.48143 * 1 2 3 29 29 H 0.96996 * 119.99917 * 265.00081 * 4 2 1 30 30 H 1.09006 * 110.52062 * 237.35179 * 9 7 5 31 31 H 1.09003 * 110.52040 * 359.94745 * 9 7 5 32 32 H 0.96994 * 125.73620 * 180.11888 * 13 11 10 33 33 H 1.09004 * 112.94342 * 53.79142 * 14 2 1 34 34 H 1.09002 * 113.76984 * 336.34240 * 15 14 2 35 35 H 1.08994 * 113.77107 * 107.74614 * 15 14 2 36 36 H 0.96998 * 119.99769 * 180.02562 * 20 19 17 37 37 H 1.08997 * 113.77051 * 221.05674 * 25 16 15 38 38 H 1.09004 * 113.87039 * 89.67466 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8591 1.1587 -2.4114 7 6 2.6499 -0.7285 -3.5874 8 1 3.4662 -1.4038 -3.3315 9 6 1.5052 -1.4985 -4.2737 10 8 1.4123 -0.8896 -5.5940 11 6 2.3291 0.0784 -5.7042 12 8 2.4675 0.7493 -6.7078 13 7 3.0816 0.2432 -4.6039 14 6 2.0400 -0.7212 1.2493 15 6 1.9690 0.1310 2.5294 16 7 3.3032 -0.4145 2.8463 17 6 4.0103 -0.6098 4.0026 18 1 5.0167 -0.9992 3.9609 19 6 3.4333 -0.3072 5.2284 20 7 2.2598 0.2870 5.2747 21 14 4.3224 -0.7435 6.8122 22 1 5.0962 0.4322 7.2856 23 1 3.3298 -1.1317 7.8463 24 1 5.2480 -1.8780 6.5640 25 6 3.5693 -0.6651 1.4165 26 1 -0.3634 -1.0244 0.0804 27 1 -0.3634 0.5819 0.8470 28 1 -0.3633 0.4427 -0.9274 29 1 2.2490 -1.6317 -1.1526 30 1 1.7530 -2.5567 -4.3575 31 1 0.5732 -1.3677 -3.7238 32 1 3.7925 0.8941 -4.4960 33 1 1.6225 -1.7218 1.3624 34 1 1.9665 1.2049 2.3427 35 1 1.1897 -0.1831 3.2237 36 1 1.8569 0.4988 6.1312 37 1 4.0676 -1.6148 1.2222 38 1 4.0370 0.1739 0.9012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969591719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:03 Heat of formation + Delta-G solvation = -48.516460 kcal Electronic energy + Delta-G solvation = -22321.873153 eV Core-core repulsion = 18780.843106 eV Total energy + Delta-G solvation = -3541.030047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.08245 -39.86184 -38.21875 -37.38239 -35.21666 -34.83436 -32.34328 -31.20790 -29.61253 -27.58299 -25.40773 -24.71186 -23.98720 -22.71224 -21.63501 -20.65544 -19.41623 -18.51679 -18.03137 -17.38042 -16.84009 -16.42124 -15.93412 -15.36824 -14.95015 -14.70083 -14.62221 -14.22222 -14.11679 -13.91170 -13.64772 -13.39072 -12.86129 -12.38717 -12.17385 -11.72990 -11.49291 -11.36016 -11.23817 -11.01688 -10.98831 -10.76386 -10.56727 -10.47861 -10.04156 -9.91826 -9.59993 -9.46121 -9.11313 -8.81501 -6.96904 -5.84811 -3.16276 2.13781 2.23090 2.42417 2.81077 3.25375 3.34063 3.39296 3.41453 3.64999 4.15474 4.22745 4.38356 4.60948 4.79003 4.95837 5.00418 5.04870 5.28192 5.42828 5.49558 5.68125 5.83965 5.92378 6.10990 6.22433 6.30312 6.39194 6.41292 6.50794 6.63658 6.85186 7.12912 7.26665 7.29404 7.47587 7.74694 7.90722 7.95503 8.97288 9.63806 10.51725 11.32680 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.044038 B = 0.003105 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.658315 B = 9015.362739 C = 9242.532963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.710 5.710 5 C 0.499 3.501 6 O -0.520 6.520 7 C 0.074 3.926 8 H 0.128 0.872 9 C 0.055 3.945 10 O -0.323 6.323 11 C 0.651 3.349 12 O -0.519 6.519 13 N -0.710 5.710 14 C -0.147 4.147 15 C 0.175 3.825 16 N -0.611 5.611 17 C -0.227 4.227 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.125 3.875 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.401 0.599 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.441 0.559 33 H 0.090 0.910 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.254 0.746 37 H 0.041 0.959 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.784 -7.057 -15.710 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.107 0.893 4 N -0.361 5.361 5 C 0.281 3.719 6 O -0.395 6.395 7 C -0.036 4.036 8 H 0.145 0.855 9 C -0.021 4.021 10 O -0.233 6.233 11 C 0.404 3.596 12 O -0.403 6.403 13 N -0.383 5.383 14 C -0.167 4.167 15 C 0.049 3.951 16 N -0.337 5.337 17 C -0.354 4.354 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.206 1.206 25 C -0.001 4.001 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.235 0.765 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.285 0.715 33 H 0.109 0.891 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.180 -6.035 -16.107 17.338 hybrid contribution 1.038 -0.257 1.323 1.701 sum -1.142 -6.292 -14.784 16.108 Atomic orbital electron populations 1.22114 0.95140 1.02101 1.02321 1.21205 0.93977 0.97539 0.82740 0.89295 1.46141 1.66325 1.14170 1.09475 1.20475 0.79099 0.87833 0.84449 1.90787 1.48846 1.15429 1.84471 1.22355 0.99547 0.92080 0.89661 0.85455 1.24258 0.99163 0.98420 0.80212 1.87298 1.53411 1.48086 1.34505 1.18493 0.77750 0.79497 0.83875 1.91092 1.70606 1.47277 1.31302 1.45723 1.39562 1.40081 1.12918 1.23873 0.97650 1.00792 0.94384 1.22200 0.89771 0.93904 0.89185 1.45987 1.16139 1.71968 0.99631 1.19022 0.96948 1.36963 0.82508 0.90275 1.24787 0.97275 1.00716 0.97497 1.69815 1.17180 1.45341 1.24329 0.86120 0.78416 0.78060 0.83256 1.21647 1.21533 1.20553 1.22536 0.92972 0.97662 0.86972 0.92511 0.90917 0.92867 0.76477 0.86137 0.87094 0.71462 0.89137 0.95430 0.90771 0.93562 0.94061 0.95150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.43 37.16 0.35 -1.53 16 2 C 0.15 1.92 2.29 -67.93 -0.16 1.77 16 3 H 0.09 1.39 7.49 -51.93 -0.39 1.00 16 4 N -0.71 -6.52 4.95 -53.81 -0.27 -6.79 16 5 C 0.50 5.04 6.91 -10.99 -0.08 4.96 16 6 O -0.52 -7.79 16.24 5.55 0.09 -7.70 16 7 C 0.07 0.49 4.17 -68.19 -0.28 0.20 16 8 H 0.13 0.38 8.14 -51.93 -0.42 -0.05 16 9 C 0.06 0.30 7.87 37.73 0.30 0.60 16 10 O -0.32 -3.37 11.09 -37.85 -0.42 -3.79 16 11 C 0.65 8.03 9.16 53.85 0.49 8.52 16 12 O -0.52 -8.47 18.04 -19.11 -0.34 -8.82 16 13 N -0.71 -6.56 5.66 -59.27 -0.34 -6.89 16 14 C -0.15 -2.30 3.36 -89.69 -0.30 -2.60 16 15 C 0.18 3.80 7.02 -2.97 -0.02 3.78 16 16 N -0.61 -14.83 3.70 -177.90 -0.66 -15.49 16 17 C -0.23 -6.16 10.69 -15.06 -0.16 -6.32 16 18 H 0.08 2.08 7.84 -52.49 -0.41 1.66 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -26.49 11.43 55.49 0.63 -25.86 16 21 Si 0.91 21.53 29.56 -169.99 -5.02 16.50 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.12 2.27 8.38 -2.98 -0.02 2.24 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.40 2.43 8.60 -40.82 -0.35 2.08 16 30 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.11 0.55 7.72 -51.93 -0.40 0.15 16 32 H 0.44 3.69 8.96 -40.82 -0.37 3.32 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.03 0.63 8.04 -51.93 -0.42 0.21 16 35 H 0.07 1.79 7.19 -51.93 -0.37 1.41 16 36 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.03 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -36.32 326.00 -6.61 -42.93 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.22 Total: -0.38 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 0.02 Total: 11.36 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.63 Total: -55.03 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.67 Total: -20.30 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.32 -6.61 -42.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969591719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.583 kcal (2) G-P(sol) polarization free energy of solvation -36.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds