Wall clock time and date at job start Tue Mar 31 2020 02:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46850 * 2 1 4 4 N 1.46497 * 109.47117 * 240.00060 * 2 1 3 5 5 C 1.34776 * 120.00009 * 85.00086 * 4 2 1 6 6 O 1.21285 * 119.99951 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99903 * 179.97438 * 5 4 2 8 8 H 1.08992 * 110.50443 * 319.30032 * 7 5 4 9 9 C 1.54089 * 110.56419 * 82.04417 * 7 5 4 10 10 O 1.45697 * 104.01283 * 118.71820 * 9 7 5 11 11 C 1.33779 * 109.47318 * 359.97438 * 10 9 7 12 12 O 1.21508 * 123.06778 * 180.02562 * 11 10 9 13 13 N 1.34320 * 113.90408 * 359.91513 * 11 10 9 14 14 C 1.53000 * 109.47018 * 119.99826 * 2 1 3 15 15 C 1.53950 * 113.74310 * 282.06043 * 14 2 1 16 16 N 1.47584 * 86.11501 * 222.04753 * 15 14 2 17 17 C 1.36939 * 134.49502 * 204.63994 * 16 15 14 18 18 H 1.07998 * 120.00126 * 182.73212 * 17 16 15 19 19 C 1.38818 * 119.99410 * 2.73366 * 17 16 15 20 20 N 1.31617 * 120.00327 * 353.41317 * 19 17 16 21 21 Si 1.86797 * 119.99547 * 173.40717 * 19 17 16 22 22 H 1.48499 * 109.47225 * 94.97575 * 21 19 17 23 23 H 1.48500 * 109.47205 * 214.97393 * 21 19 17 24 24 H 1.48507 * 109.47438 * 334.97281 * 21 19 17 25 25 C 1.47582 * 91.01491 * 24.63833 * 16 15 14 26 26 H 1.08991 * 109.47532 * 184.48693 * 1 2 3 27 27 H 1.09001 * 109.47304 * 304.48844 * 1 2 3 28 28 H 1.09001 * 109.47021 * 64.48143 * 1 2 3 29 29 H 0.96996 * 119.99917 * 265.00081 * 4 2 1 30 30 H 1.09006 * 110.52062 * 237.35179 * 9 7 5 31 31 H 1.09003 * 110.52040 * 359.94745 * 9 7 5 32 32 H 0.96994 * 125.73620 * 180.11888 * 13 11 10 33 33 H 1.09004 * 112.94342 * 53.79142 * 14 2 1 34 34 H 1.09002 * 113.76984 * 336.34240 * 15 14 2 35 35 H 1.08994 * 113.77107 * 107.74614 * 15 14 2 36 36 H 0.96998 * 119.99769 * 180.02562 * 20 19 17 37 37 H 1.08997 * 113.77051 * 221.05674 * 25 16 15 38 38 H 1.09004 * 113.87039 * 89.67466 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8591 1.1587 -2.4114 7 6 2.6499 -0.7285 -3.5874 8 1 3.4662 -1.4038 -3.3315 9 6 1.5052 -1.4985 -4.2737 10 8 1.4123 -0.8896 -5.5940 11 6 2.3291 0.0784 -5.7042 12 8 2.4675 0.7493 -6.7078 13 7 3.0816 0.2432 -4.6039 14 6 2.0400 -0.7212 1.2493 15 6 1.9690 0.1310 2.5294 16 7 3.3032 -0.4145 2.8463 17 6 4.0103 -0.6098 4.0026 18 1 5.0167 -0.9992 3.9609 19 6 3.4333 -0.3072 5.2284 20 7 2.2598 0.2870 5.2747 21 14 4.3224 -0.7435 6.8122 22 1 5.0962 0.4322 7.2856 23 1 3.3298 -1.1317 7.8463 24 1 5.2480 -1.8780 6.5640 25 6 3.5693 -0.6651 1.4165 26 1 -0.3634 -1.0244 0.0804 27 1 -0.3634 0.5819 0.8470 28 1 -0.3633 0.4427 -0.9274 29 1 2.2490 -1.6317 -1.1526 30 1 1.7530 -2.5567 -4.3575 31 1 0.5732 -1.3677 -3.7238 32 1 3.7925 0.8941 -4.4960 33 1 1.6225 -1.7218 1.3624 34 1 1.9665 1.2049 2.3427 35 1 1.1897 -0.1831 3.2237 36 1 1.8569 0.4988 6.1312 37 1 4.0676 -1.6148 1.2222 38 1 4.0370 0.1739 0.9012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969591719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:02 Heat of formation + Delta-G solvation = -78.954924 kcal Electronic energy + Delta-G solvation = -22323.193064 eV Core-core repulsion = 18780.843106 eV Total energy + Delta-G solvation = -3542.349958 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.83107 -40.88758 -39.61413 -38.33480 -36.30488 -35.67172 -34.16472 -32.30888 -30.39198 -29.30020 -26.64024 -25.92059 -25.37674 -23.51599 -22.93085 -21.57834 -20.82021 -19.26940 -18.87047 -18.75341 -18.12893 -17.35785 -16.93347 -16.81581 -16.25913 -15.80167 -15.58956 -15.35986 -15.23145 -14.95946 -14.65445 -14.47323 -14.11070 -13.60361 -13.25822 -13.16055 -13.05081 -12.96315 -12.66865 -12.36286 -12.06356 -12.02875 -11.89010 -11.77504 -11.58518 -11.38780 -11.19569 -10.80706 -10.31539 -10.08336 -8.91324 -7.90972 -5.22811 1.33472 1.44957 1.46848 1.47519 1.57050 1.64477 2.03126 2.48192 2.61884 3.13478 3.31096 3.41129 3.43310 3.76035 3.84059 4.00414 4.12198 4.29396 4.46742 4.49793 4.53649 4.61864 4.81594 4.86106 4.89643 5.00343 5.11264 5.27630 5.34113 5.49940 5.57360 5.66521 5.69056 5.95733 6.09632 6.53697 6.91082 6.93139 7.21072 7.62487 8.57790 9.26390 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.044038 B = 0.003105 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.658315 B = 9015.362739 C = 9242.532963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.058 0.942 4 N -0.693 5.693 5 C 0.501 3.499 6 O -0.574 6.574 7 C 0.083 3.917 8 H 0.180 0.820 9 C 0.051 3.949 10 O -0.338 6.338 11 C 0.649 3.351 12 O -0.573 6.573 13 N -0.704 5.704 14 C -0.105 4.105 15 C 0.166 3.834 16 N -0.645 5.645 17 C -0.236 4.236 18 H 0.084 0.916 19 C -0.067 4.067 20 N -0.953 5.953 21 Si 0.976 3.024 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.264 1.264 25 C 0.127 3.873 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.423 0.577 30 H 0.172 0.828 31 H 0.118 0.882 32 H 0.443 0.557 33 H 0.112 0.888 34 H 0.006 0.994 35 H 0.043 0.957 36 H 0.248 0.752 37 H 0.069 0.931 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 -9.950 -16.465 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.057 3.943 3 H 0.076 0.924 4 N -0.345 5.345 5 C 0.285 3.715 6 O -0.452 6.452 7 C -0.026 4.026 8 H 0.197 0.803 9 C -0.023 4.023 10 O -0.248 6.248 11 C 0.402 3.598 12 O -0.461 6.461 13 N -0.376 5.376 14 C -0.125 4.125 15 C 0.040 3.960 16 N -0.371 5.371 17 C -0.364 4.364 18 H 0.102 0.898 19 C -0.260 4.260 20 N -0.602 5.602 21 Si 0.804 3.196 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.189 1.189 25 C 0.003 3.997 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.261 0.739 30 H 0.189 0.811 31 H 0.136 0.864 32 H 0.288 0.712 33 H 0.130 0.870 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.379 -9.005 -16.867 19.170 hybrid contribution 0.797 0.646 1.576 1.880 sum -0.582 -8.359 -15.291 17.436 Atomic orbital electron populations 1.22051 0.94106 1.03348 1.01624 1.20735 0.94622 0.95872 0.83083 0.92394 1.45816 1.65706 1.14997 1.08016 1.21095 0.77851 0.87198 0.85330 1.90787 1.51055 1.18058 1.85345 1.22656 1.01514 0.91441 0.87038 0.80275 1.24793 0.99192 1.00401 0.77881 1.87266 1.52738 1.47635 1.37120 1.18643 0.77958 0.79396 0.83832 1.91039 1.72213 1.49366 1.33473 1.45767 1.38739 1.40367 1.12716 1.23437 0.96002 1.00435 0.92590 1.22124 0.88319 0.93648 0.91892 1.46455 1.17099 1.72172 1.01406 1.19447 0.97308 1.35684 0.83970 0.89794 1.25611 0.98270 1.01466 1.00662 1.70006 1.18789 1.47044 1.24395 0.85104 0.77289 0.77924 0.79259 1.21945 1.22021 1.18890 1.22718 0.94845 0.98723 0.83464 0.90078 0.92509 0.92927 0.73906 0.81084 0.86437 0.71220 0.86970 0.97580 0.93866 0.94307 0.91304 0.95061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.43 71.98 0.68 -2.70 16 2 C 0.16 3.89 2.29 44.99 0.10 3.99 16 3 H 0.06 1.81 7.49 -2.38 -0.02 1.79 16 4 N -0.69 -10.14 4.95 -442.53 -2.19 -12.33 16 5 C 0.50 8.65 6.91 87.66 0.61 9.25 16 6 O -0.57 -16.64 16.24 -3.05 -0.05 -16.69 16 7 C 0.08 0.74 4.17 44.50 0.19 0.93 16 8 H 0.18 -0.12 8.14 -2.39 -0.02 -0.14 16 9 C 0.05 0.34 7.87 72.35 0.57 0.90 16 10 O -0.34 -6.31 11.09 -47.39 -0.53 -6.83 16 11 C 0.65 15.37 9.16 129.86 1.19 16.56 16 12 O -0.57 -19.07 18.04 19.66 0.35 -18.71 16 13 N -0.70 -11.61 5.66 -572.80 -3.24 -14.86 16 14 C -0.10 -3.07 3.36 -10.13 -0.03 -3.10 16 15 C 0.17 7.34 7.02 86.48 0.61 7.95 16 16 N -0.64 -31.09 3.70 -716.75 -2.65 -33.74 16 17 C -0.24 -12.75 10.69 84.03 0.90 -11.85 16 18 H 0.08 4.32 7.84 -2.91 -0.02 4.29 16 19 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 20 N -0.95 -56.44 11.43 21.65 0.25 -56.20 16 21 Si 0.98 44.51 29.56 68.60 2.03 46.54 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 C 0.13 4.32 8.38 86.48 0.72 5.05 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.42 2.75 8.60 -92.71 -0.80 1.95 16 30 H 0.17 -0.54 8.14 -2.38 -0.02 -0.56 16 31 H 0.12 0.66 7.72 -2.39 -0.02 0.64 16 32 H 0.44 6.86 8.96 -92.71 -0.83 6.03 16 33 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 34 H 0.01 0.30 8.04 -2.39 -0.02 0.28 16 35 H 0.04 2.16 7.19 -2.39 -0.02 2.14 16 36 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.03 1.09 8.10 -2.38 -0.02 1.07 16 Total: -1.00 -84.60 326.00 -0.57 -85.17 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -0.53 Total: 3.95 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 5.99 Total: 23.71 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -7.84 Total: -117.12 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.22 Total: -42.24 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -84.60 -0.57 -85.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969591719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.215 kcal (2) G-P(sol) polarization free energy of solvation -84.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds