Wall clock time and date at job start Tue Mar 31 2020 02:55:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09000 * 109.47192 * 2 1
4 4 N 1.46506 * 109.46904 * 119.99422 * 2 1 3
5 5 C 1.34774 * 120.00088 * 275.00402 * 4 2 1
6 6 O 1.21280 * 120.00020 * 359.97438 * 5 4 2
7 7 C 1.50692 * 120.00061 * 179.97438 * 5 4 2
8 8 H 1.09003 * 110.50611 * 319.29671 * 7 5 4
9 9 C 1.54092 * 110.56743 * 82.03856 * 7 5 4
10 10 O 1.45704 * 104.00776 * 118.56996 * 9 7 5
11 11 C 1.33771 * 109.48007 * 0.02562 * 10 9 7
12 12 O 1.21502 * 123.07585 * 180.02562 * 11 10 9
13 13 N 1.34327 * 113.89858 * 0.07774 * 11 10 9
14 14 C 1.52993 * 109.47533 * 239.99680 * 2 1 3
15 15 C 1.53496 * 114.20739 * 64.99799 * 14 2 1
16 16 N 1.47072 * 87.98567 * 220.15001 * 15 14 2
17 17 C 1.36937 * 136.05332 * 207.08694 * 16 15 14
18 18 H 1.07997 * 120.00158 * 6.93140 * 17 16 15
19 19 C 1.38817 * 119.99553 * 187.20881 * 17 16 15
20 20 N 1.31616 * 119.99860 * 7.22414 * 19 17 16
21 21 Si 1.86795 * 119.99761 * 187.21912 * 19 17 16
22 22 H 1.48503 * 109.46942 * 94.80854 * 21 19 17
23 23 H 1.48496 * 109.47262 * 214.80527 * 21 19 17
24 24 H 1.48500 * 109.47536 * 334.80644 * 21 19 17
25 25 C 1.47064 * 87.88540 * 27.34126 * 16 15 14
26 26 H 1.08999 * 109.46606 * 60.00841 * 1 2 3
27 27 H 1.09000 * 109.47192 * 179.97438 * 1 2 3
28 28 H 1.08994 * 109.47139 * 300.00693 * 1 2 3
29 29 H 0.97001 * 119.99808 * 95.00061 * 4 2 1
30 30 H 1.08996 * 110.52471 * 237.20687 * 9 7 5
31 31 H 1.09000 * 110.51803 * 359.80563 * 9 7 5
32 32 H 0.97000 * 125.73558 * 179.97438 * 13 11 10
33 33 H 1.09002 * 113.28272 * 198.07298 * 14 2 1
34 34 H 1.09006 * 113.46317 * 105.36826 * 15 14 2
35 35 H 1.08994 * 113.52296 * 334.94163 * 15 14 2
36 36 H 0.97000 * 119.99499 * 179.97438 * 20 19 17
37 37 H 1.09000 * 113.46537 * 87.43681 * 25 16 15
38 38 H 1.08988 * 113.46951 * 217.87335 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6905 1.1963
5 6 2.1470 -0.0181 2.3572
6 8 1.8589 1.1587 2.4115
7 6 2.6487 -0.7285 3.5878
8 1 2.2138 -1.7256 3.6571
9 6 4.1875 -0.8087 3.5771
10 8 4.5874 -0.0697 4.7675
11 6 3.4982 0.3833 5.3983
12 8 3.5480 1.0339 6.4232
13 7 2.3438 0.0525 4.7964
14 6 2.0401 -0.7213 -1.2491
15 6 1.6921 -0.0179 -2.5683
16 7 1.4192 -1.3438 -3.1432
17 6 1.4519 -1.9022 -4.3931
18 1 1.8439 -1.3381 -5.2264
19 6 0.9758 -3.1912 -4.5900
20 7 0.3645 -3.8236 -3.6109
21 14 1.2028 -4.0281 -6.2445
22 1 2.4309 -4.8624 -6.2128
23 1 0.0269 -4.8889 -6.5293
24 1 1.3313 -2.9983 -7.3067
25 6 1.0897 -1.8042 -1.7859
26 1 -0.3632 0.5137 -0.8901
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3633 0.5139 0.8899
29 1 2.2490 -1.6317 1.1528
30 1 4.5166 -1.8457 3.6425
31 1 4.5883 -0.3375 2.6797
32 1 1.4555 0.2902 5.1052
33 1 3.0811 -1.0347 -1.1707
34 1 2.5414 0.4880 -3.0276
35 1 0.8086 0.6171 -2.5028
36 1 0.0315 -4.7242 -3.7487
37 1 0.0471 -1.6406 -1.5132
38 1 1.4256 -2.8202 -1.5787
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000969591720.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:55:06
Heat of formation + Delta-G solvation = -39.943396 kcal
Electronic energy + Delta-G solvation = -22333.927291 eV
Core-core repulsion = 18793.269000 eV
Total energy + Delta-G solvation = -3540.658291 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.136 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-42.06618 -39.92874 -38.52086 -37.37705 -35.18011 -34.81536 -32.44423 -31.08666
-29.52343 -27.43518 -25.47974 -24.81711 -24.20130 -22.70010 -21.81171 -20.66009
-19.03601 -18.46278 -17.98271 -17.26603 -16.84306 -16.45352 -16.04904 -15.20651
-14.98241 -14.89078 -14.61991 -14.52568 -14.14571 -13.88817 -13.74274 -13.10659
-12.81213 -12.44621 -12.11515 -11.87722 -11.54450 -11.22139 -11.11909 -11.00191
-10.93562 -10.75086 -10.57214 -10.53994 -10.08131 -9.83784 -9.54795 -9.36894
-9.09531 -8.84150 -6.95993 -5.89063 -3.19130 2.13932 2.23781 2.43601
2.82372 3.26990 3.32376 3.38014 3.39743 3.67306 4.18239 4.25067
4.36821 4.64891 4.82736 4.98275 5.01254 5.09514 5.25193 5.42682
5.55359 5.63401 5.86023 5.97460 6.08588 6.23520 6.41142 6.43678
6.45906 6.56856 6.60822 6.86529 7.03461 7.22831 7.30749 7.41130
7.75479 7.87104 7.94874 8.94003 9.60199 10.54252 11.29774
Molecular weight = 283.14amu
Principal moments of inertia in cm(-1)
A = 0.039090 B = 0.003141 C = 0.003057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 716.117558 B = 8911.264542 C = 9158.158140
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.156 3.844
3 H 0.085 0.915
4 N -0.709 5.709
5 C 0.500 3.500
6 O -0.524 6.524
7 C 0.074 3.926
8 H 0.128 0.872
9 C 0.054 3.946
10 O -0.323 6.323
11 C 0.652 3.348
12 O -0.519 6.519
13 N -0.710 5.710
14 C -0.158 4.158
15 C 0.126 3.874
16 N -0.609 5.609
17 C -0.220 4.220
18 H 0.081 0.919
19 C -0.007 4.007
20 N -0.920 5.920
21 Si 0.913 3.087
22 H -0.288 1.288
23 H -0.290 1.290
24 H -0.280 1.280
25 C 0.162 3.838
26 H 0.070 0.930
27 H 0.069 0.931
28 H 0.050 0.950
29 H 0.404 0.596
30 H 0.122 0.878
31 H 0.112 0.888
32 H 0.441 0.559
33 H 0.093 0.907
34 H 0.040 0.960
35 H 0.036 0.964
36 H 0.254 0.746
37 H 0.043 0.957
38 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.957 2.332 13.048 13.833
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.052 3.948
3 H 0.103 0.897
4 N -0.361 5.361
5 C 0.282 3.718
6 O -0.399 6.399
7 C -0.036 4.036
8 H 0.146 0.854
9 C -0.021 4.021
10 O -0.233 6.233
11 C 0.404 3.596
12 O -0.404 6.404
13 N -0.383 5.383
14 C -0.178 4.178
15 C -0.001 4.001
16 N -0.334 5.334
17 C -0.347 4.347
18 H 0.099 0.901
19 C -0.203 4.203
20 N -0.566 5.566
21 Si 0.743 3.257
22 H -0.215 1.215
23 H -0.217 1.217
24 H -0.205 1.205
25 C 0.036 3.964
26 H 0.089 0.911
27 H 0.088 0.912
28 H 0.069 0.931
29 H 0.239 0.761
30 H 0.140 0.860
31 H 0.130 0.870
32 H 0.284 0.716
33 H 0.111 0.889
34 H 0.059 0.941
35 H 0.053 0.947
36 H 0.064 0.936
37 H 0.060 0.940
38 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 4.133 3.261 13.347 14.347
hybrid contribution -0.563 -0.984 -1.064 1.555
sum 3.570 2.277 12.282 12.992
Atomic orbital electron populations
1.22290 0.94981 1.02933 1.01946 1.20974 0.94330 0.96838 0.82690
0.89729 1.46164 1.66025 1.14360 1.09528 1.20485 0.79081 0.87707
0.84518 1.90771 1.49212 1.15429 1.84474 1.22355 0.97405 0.97706
0.86178 0.85398 1.24280 0.90481 0.99381 0.87960 1.87299 1.30482
1.67165 1.38309 1.18497 0.79568 0.78470 0.83054 1.91086 1.85269
1.41457 1.22546 1.45721 1.09462 1.58101 1.25036 1.23724 1.01000
1.00896 0.92221 1.22379 0.97439 0.90352 0.89921 1.45618 1.78978
1.05377 1.03447 1.18963 1.34718 0.96867 0.84144 0.90080 1.24817
0.99737 0.97776 0.98013 1.69841 1.42123 1.13101 1.31550 0.86094
0.77274 0.79420 0.82934 1.21510 1.21681 1.20539 1.22278 0.94839
0.95568 0.83687 0.91079 0.91193 0.93124 0.76111 0.86015 0.86977
0.71560 0.88862 0.94134 0.94685 0.93633 0.93995 0.92592
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.19 8.22 37.16 0.31 -1.88 16
2 C 0.16 2.00 2.76 -67.93 -0.19 1.81 16
3 H 0.08 1.17 7.58 -51.93 -0.39 0.77 16
4 N -0.71 -6.83 5.08 -53.81 -0.27 -7.11 16
5 C 0.50 5.06 6.91 -10.99 -0.08 4.98 16
6 O -0.52 -7.63 16.24 5.56 0.09 -7.54 16
7 C 0.07 0.50 4.16 -68.19 -0.28 0.22 16
8 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16
9 C 0.05 0.33 7.87 37.73 0.30 0.63 16
10 O -0.32 -3.48 11.09 -37.83 -0.42 -3.90 16
11 C 0.65 8.10 9.16 53.85 0.49 8.59 16
12 O -0.52 -8.49 18.04 -19.11 -0.34 -8.84 16
13 N -0.71 -6.50 5.67 -59.27 -0.34 -6.83 16
14 C -0.16 -2.45 4.14 -89.97 -0.37 -2.83 16
15 C 0.13 2.35 8.10 -8.50 -0.07 2.28 16
16 N -0.61 -14.56 3.76 -184.58 -0.69 -15.26 16
17 C -0.22 -5.90 10.73 -15.06 -0.16 -6.06 16
18 H 0.08 2.12 7.84 -52.49 -0.41 1.70 16
19 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16
20 N -0.92 -25.93 11.86 55.49 0.66 -25.28 16
21 Si 0.91 21.27 29.56 -169.99 -5.02 16.24 16
22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16
24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16
25 C 0.16 3.30 6.35 -8.37 -0.05 3.25 16
26 H 0.07 1.01 6.77 -51.93 -0.35 0.66 16
27 H 0.07 0.97 6.33 -51.93 -0.33 0.64 16
28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
29 H 0.40 2.94 8.60 -40.82 -0.35 2.59 16
30 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16
31 H 0.11 0.64 7.72 -51.93 -0.40 0.24 16
32 H 0.44 3.53 8.96 -40.82 -0.37 3.16 16
33 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16
34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.04 0.64 6.75 -51.93 -0.35 0.29 16
36 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16
37 H 0.04 0.88 5.45 -51.93 -0.28 0.60 16
38 H 0.06 1.26 7.63 -51.94 -0.40 0.86 16
LS Contribution 319.18 15.07 4.81 4.81
Total: -1.00 -35.54 319.18 -6.62 -42.16
By element:
Atomic # 1 Polarization: 5.71 SS G_CDS: -4.88 Total: 0.83 kcal
Atomic # 6 Polarization: 10.92 SS G_CDS: -0.20 Total: 10.71 kcal
Atomic # 7 Polarization: -53.83 SS G_CDS: -0.65 Total: -54.47 kcal
Atomic # 8 Polarization: -19.60 SS G_CDS: -0.67 Total: -20.28 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -35.54 -6.62 -42.16 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000969591720.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.214 kcal
(2) G-P(sol) polarization free energy of solvation -35.538 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.324 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.943 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds