Wall clock time and date at job start Tue Mar 31 2020 02:55:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09000 * 109.47192 * 2 1
4 4 N 1.46506 * 109.46904 * 119.99422 * 2 1 3
5 5 C 1.34774 * 120.00088 * 275.00402 * 4 2 1
6 6 O 1.21280 * 120.00020 * 359.97438 * 5 4 2
7 7 C 1.50692 * 120.00061 * 179.97438 * 5 4 2
8 8 H 1.09003 * 110.50611 * 319.29671 * 7 5 4
9 9 C 1.54092 * 110.56743 * 82.03856 * 7 5 4
10 10 O 1.45704 * 104.00776 * 118.56996 * 9 7 5
11 11 C 1.33771 * 109.48007 * 0.02562 * 10 9 7
12 12 O 1.21502 * 123.07585 * 180.02562 * 11 10 9
13 13 N 1.34327 * 113.89858 * 0.07774 * 11 10 9
14 14 C 1.52993 * 109.47533 * 239.99680 * 2 1 3
15 15 C 1.53496 * 114.20739 * 64.99799 * 14 2 1
16 16 N 1.47072 * 87.98567 * 220.15001 * 15 14 2
17 17 C 1.36937 * 136.05332 * 207.08694 * 16 15 14
18 18 H 1.07997 * 120.00158 * 6.93140 * 17 16 15
19 19 C 1.38817 * 119.99553 * 187.20881 * 17 16 15
20 20 N 1.31616 * 119.99860 * 7.22414 * 19 17 16
21 21 Si 1.86795 * 119.99761 * 187.21912 * 19 17 16
22 22 H 1.48503 * 109.46942 * 94.80854 * 21 19 17
23 23 H 1.48496 * 109.47262 * 214.80527 * 21 19 17
24 24 H 1.48500 * 109.47536 * 334.80644 * 21 19 17
25 25 C 1.47064 * 87.88540 * 27.34126 * 16 15 14
26 26 H 1.08999 * 109.46606 * 60.00841 * 1 2 3
27 27 H 1.09000 * 109.47192 * 179.97438 * 1 2 3
28 28 H 1.08994 * 109.47139 * 300.00693 * 1 2 3
29 29 H 0.97001 * 119.99808 * 95.00061 * 4 2 1
30 30 H 1.08996 * 110.52471 * 237.20687 * 9 7 5
31 31 H 1.09000 * 110.51803 * 359.80563 * 9 7 5
32 32 H 0.97000 * 125.73558 * 179.97438 * 13 11 10
33 33 H 1.09002 * 113.28272 * 198.07298 * 14 2 1
34 34 H 1.09006 * 113.46317 * 105.36826 * 15 14 2
35 35 H 1.08994 * 113.52296 * 334.94163 * 15 14 2
36 36 H 0.97000 * 119.99499 * 179.97438 * 20 19 17
37 37 H 1.09000 * 113.46537 * 87.43681 * 25 16 15
38 38 H 1.08988 * 113.46951 * 217.87335 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6905 1.1963
5 6 2.1470 -0.0181 2.3572
6 8 1.8589 1.1587 2.4115
7 6 2.6487 -0.7285 3.5878
8 1 2.2138 -1.7256 3.6571
9 6 4.1875 -0.8087 3.5771
10 8 4.5874 -0.0697 4.7675
11 6 3.4982 0.3833 5.3983
12 8 3.5480 1.0339 6.4232
13 7 2.3438 0.0525 4.7964
14 6 2.0401 -0.7213 -1.2491
15 6 1.6921 -0.0179 -2.5683
16 7 1.4192 -1.3438 -3.1432
17 6 1.4519 -1.9022 -4.3931
18 1 1.8439 -1.3381 -5.2264
19 6 0.9758 -3.1912 -4.5900
20 7 0.3645 -3.8236 -3.6109
21 14 1.2028 -4.0281 -6.2445
22 1 2.4309 -4.8624 -6.2128
23 1 0.0269 -4.8889 -6.5293
24 1 1.3313 -2.9983 -7.3067
25 6 1.0897 -1.8042 -1.7859
26 1 -0.3632 0.5137 -0.8901
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3633 0.5139 0.8899
29 1 2.2490 -1.6317 1.1528
30 1 4.5166 -1.8457 3.6425
31 1 4.5883 -0.3375 2.6797
32 1 1.4555 0.2902 5.1052
33 1 3.0811 -1.0347 -1.1707
34 1 2.5414 0.4880 -3.0276
35 1 0.8086 0.6171 -2.5028
36 1 0.0315 -4.7242 -3.7487
37 1 0.0471 -1.6406 -1.5132
38 1 1.4256 -2.8202 -1.5787
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000969591720.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:55:05
Heat of formation + Delta-G solvation = -69.387661 kcal
Electronic energy + Delta-G solvation = -22335.204090 eV
Core-core repulsion = 18793.269000 eV
Total energy + Delta-G solvation = -3541.935090 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.136 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.83703 -41.01523 -39.83710 -38.34049 -36.25533 -35.67194 -34.22745 -32.23221
-30.39908 -29.08695 -26.61264 -26.24420 -25.42429 -23.52020 -23.22983 -21.57770
-20.30403 -19.24031 -18.89111 -18.65699 -18.10052 -17.38497 -17.08733 -16.82004
-16.18880 -15.88981 -15.65691 -15.64105 -15.26711 -15.05092 -14.49800 -14.37717
-14.13258 -13.59592 -13.34842 -13.31060 -13.05000 -12.79705 -12.65847 -12.21040
-12.05696 -12.02948 -11.92550 -11.80537 -11.51156 -11.45164 -10.93910 -10.79167
-10.31738 -10.11222 -8.85204 -7.91817 -5.21318 1.33169 1.43564 1.48489
1.48653 1.57571 1.63675 2.02920 2.48972 2.60947 3.12073 3.32271
3.41822 3.49817 3.70922 3.81128 4.05376 4.13384 4.22778 4.43817
4.47917 4.52207 4.58394 4.75528 4.80973 5.00979 5.04216 5.08406
5.25786 5.37099 5.45424 5.57447 5.67270 5.71972 5.96244 6.08758
6.51111 6.91136 6.94745 7.16297 7.61850 8.64228 9.26976
Molecular weight = 283.14amu
Principal moments of inertia in cm(-1)
A = 0.039090 B = 0.003141 C = 0.003057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 716.117558 B = 8911.264542 C = 9158.158140
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.168 3.832
3 H 0.083 0.917
4 N -0.698 5.698
5 C 0.504 3.496
6 O -0.569 6.569
7 C 0.082 3.918
8 H 0.178 0.822
9 C 0.050 3.950
10 O -0.338 6.338
11 C 0.649 3.351
12 O -0.572 6.572
13 N -0.702 5.702
14 C -0.117 4.117
15 C 0.119 3.881
16 N -0.644 5.644
17 C -0.230 4.230
18 H 0.080 0.920
19 C -0.062 4.062
20 N -0.948 5.948
21 Si 0.975 3.025
22 H -0.285 1.285
23 H -0.296 1.296
24 H -0.271 1.271
25 C 0.162 3.838
26 H 0.059 0.941
27 H 0.064 0.936
28 H 0.054 0.946
29 H 0.420 0.580
30 H 0.168 0.832
31 H 0.117 0.883
32 H 0.445 0.555
33 H 0.107 0.893
34 H 0.049 0.951
35 H 0.043 0.957
36 H 0.249 0.751
37 H 0.036 0.964
38 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.785 1.601 13.126 14.062
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.063 3.937
3 H 0.101 0.899
4 N -0.350 5.350
5 C 0.288 3.712
6 O -0.448 6.448
7 C -0.027 4.027
8 H 0.195 0.805
9 C -0.024 4.024
10 O -0.248 6.248
11 C 0.402 3.598
12 O -0.460 6.460
13 N -0.374 5.374
14 C -0.137 4.137
15 C -0.006 4.006
16 N -0.370 5.370
17 C -0.359 4.359
18 H 0.098 0.902
19 C -0.256 4.256
20 N -0.597 5.597
21 Si 0.803 3.197
22 H -0.212 1.212
23 H -0.223 1.223
24 H -0.196 1.196
25 C 0.037 3.963
26 H 0.078 0.922
27 H 0.083 0.917
28 H 0.073 0.927
29 H 0.257 0.743
30 H 0.186 0.814
31 H 0.135 0.865
32 H 0.289 0.711
33 H 0.125 0.875
34 H 0.068 0.932
35 H 0.061 0.939
36 H 0.058 0.942
37 H 0.053 0.947
38 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges 4.974 2.513 13.403 14.515
hybrid contribution -0.828 -0.711 -1.150 1.585
sum 4.146 1.802 12.253 13.061
Atomic orbital electron populations
1.22204 0.95366 1.02403 1.01595 1.20619 0.93838 0.96512 0.82742
0.89929 1.45937 1.65517 1.14998 1.08532 1.21008 0.77905 0.87088
0.85171 1.90770 1.51225 1.17614 1.85175 1.22625 0.98215 0.98692
0.83199 0.80511 1.24770 0.89692 1.01431 0.86510 1.87268 1.30262
1.67576 1.39684 1.18646 0.80422 0.78025 0.82739 1.91036 1.86160
1.43801 1.24975 1.45734 1.08869 1.57520 1.25244 1.23343 1.00472
0.97742 0.92139 1.22578 0.97987 0.88911 0.91150 1.46008 1.79212
1.08113 1.03641 1.19302 1.33765 0.97198 0.85617 0.90196 1.25563
1.00240 0.98536 1.01218 1.69987 1.43469 1.13048 1.33193 0.85118
0.76751 0.78288 0.79515 1.21212 1.22257 1.19606 1.22267 0.95545
0.95625 0.82841 0.92245 0.91749 0.92684 0.74272 0.81436 0.86503
0.71086 0.87488 0.93248 0.93947 0.94216 0.94657 0.95065
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.00 8.22 71.98 0.59 -3.41 16
2 C 0.17 3.93 2.76 44.99 0.12 4.05 16
3 H 0.08 2.09 7.58 -2.39 -0.02 2.07 16
4 N -0.70 -11.21 5.08 -442.54 -2.25 -13.45 16
5 C 0.50 8.72 6.91 87.65 0.61 9.32 16
6 O -0.57 -15.60 16.24 -3.03 -0.05 -15.65 16
7 C 0.08 0.80 4.16 44.50 0.19 0.99 16
8 H 0.18 0.13 8.14 -2.39 -0.02 0.11 16
9 C 0.05 0.42 7.87 72.35 0.57 0.99 16
10 O -0.34 -6.66 11.09 -47.32 -0.52 -7.18 16
11 C 0.65 15.51 9.16 129.86 1.19 16.70 16
12 O -0.57 -18.97 18.04 19.68 0.36 -18.61 16
13 N -0.70 -11.44 5.67 -572.80 -3.25 -14.68 16
14 C -0.12 -3.40 4.14 -10.37 -0.04 -3.44 16
15 C 0.12 4.31 8.10 83.18 0.67 4.98 16
16 N -0.64 -30.57 3.76 -737.88 -2.78 -33.35 16
17 C -0.23 -12.36 10.73 84.03 0.90 -11.46 16
18 H 0.08 4.15 7.84 -2.91 -0.02 4.13 16
19 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16
20 N -0.95 -54.01 11.86 21.65 0.26 -53.76 16
21 Si 0.97 43.77 29.56 68.60 2.03 45.80 16
22 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16
23 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16
24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
25 C 0.16 6.53 6.35 83.27 0.53 7.06 16
26 H 0.06 1.64 6.77 -2.39 -0.02 1.62 16
27 H 0.06 1.71 6.33 -2.39 -0.02 1.69 16
28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16
29 H 0.42 4.42 8.60 -92.71 -0.80 3.62 16
30 H 0.17 -0.08 8.14 -2.39 -0.02 -0.10 16
31 H 0.12 0.90 7.72 -2.39 -0.02 0.89 16
32 H 0.44 6.46 8.96 -92.71 -0.83 5.63 16
33 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16
34 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16
35 H 0.04 1.50 6.75 -2.39 -0.02 1.48 16
36 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16
37 H 0.04 1.48 5.45 -2.39 -0.01 1.47 16
38 H 0.03 1.40 7.63 -2.39 -0.02 1.38 16
Total: -1.00 -79.70 319.18 -0.92 -80.63
By element:
Atomic # 1 Polarization: 7.89 SS G_CDS: -0.51 Total: 7.38 kcal
Atomic # 6 Polarization: 17.09 SS G_CDS: 5.79 Total: 22.88 kcal
Atomic # 7 Polarization: -107.23 SS G_CDS: -8.01 Total: -115.24 kcal
Atomic # 8 Polarization: -41.22 SS G_CDS: -0.22 Total: -41.44 kcal
Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal
Total: -79.70 -0.92 -80.63 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000969591720.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.240 kcal
(2) G-P(sol) polarization free energy of solvation -79.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.464 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.628 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.388 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds