Wall clock time and date at job start Tue Mar 31 2020 02:25:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86802 * 119.99828 * 2 1
4 4 H 1.48502 * 109.47157 * 180.02562 * 3 2 1
5 5 H 1.48495 * 109.47233 * 300.00288 * 3 2 1
6 6 H 1.48506 * 109.47111 * 60.00491 * 3 2 1
7 7 C 1.38807 * 120.00188 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00170 * 194.54110 * 7 2 1
9 9 N 1.36935 * 120.00447 * 14.53639 * 7 2 1
10 10 C 1.43458 * 118.94752 * 205.20522 * 9 7 2
11 11 C 1.53797 * 107.96008 * 273.62986 * 10 9 7
12 12 C 1.47141 * 111.83996 * 281.66708 * 11 10 9
13 13 N 1.48298 * 110.34143 * 58.28951 * 12 11 10
14 14 C 1.34779 * 119.97972 * 102.51127 * 13 12 11
15 15 O 1.21280 * 120.00496 * 359.97438 * 14 13 12
16 16 C 1.50700 * 119.99452 * 179.97438 * 14 13 12
17 17 H 1.08997 * 110.50988 * 319.30503 * 16 14 13
18 18 C 1.54096 * 110.56077 * 82.04133 * 16 14 13
19 19 O 1.46054 * 103.84229 * 118.53218 * 18 16 14
20 20 C 1.33764 * 109.50865 * 0.11801 * 19 18 16
21 21 O 1.21515 * 123.07428 * 179.88250 * 20 19 18
22 22 N 1.34011 * 113.86049 * 359.92216 * 20 19 18
23 23 C 1.43619 * 120.04483 * 282.49477 * 13 12 11
24 24 C 1.48863 * 118.93556 * 25.18166 * 9 7 2
25 25 H 0.97002 * 120.00083 * 359.97438 * 1 2 3
26 26 H 1.09004 * 109.76666 * 154.00809 * 10 9 7
27 27 H 1.09006 * 109.80237 * 33.26593 * 10 9 7
28 28 H 1.08994 * 109.00880 * 42.27763 * 11 10 9
29 29 H 1.09001 * 109.00754 * 161.06406 * 11 10 9
30 30 H 1.09000 * 109.32780 * 178.56630 * 12 11 10
31 31 H 1.08998 * 109.32877 * 298.03518 * 12 11 10
32 32 H 1.08999 * 110.52196 * 237.20100 * 18 16 14
33 33 H 1.08995 * 110.52672 * 359.94181 * 18 16 14
34 34 H 0.96994 * 125.55919 * 179.97438 * 22 20 19
35 35 H 1.08997 * 108.87588 * 329.88155 * 23 13 12
36 36 H 1.08993 * 108.87623 * 211.44065 * 23 13 12
37 37 H 1.09005 * 109.47941 * 260.60495 * 24 9 7
38 38 H 1.09001 * 109.47823 * 20.62374 * 24 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3465 -0.0006
5 1 1.8914 2.3965 -1.2124
6 1 1.8915 2.3964 1.2126
7 6 2.0103 -1.2021 -0.0005
8 1 3.0643 -1.2172 0.2343
9 7 1.3586 -2.3689 -0.2987
10 6 1.8799 -3.6049 0.2099
11 6 2.9383 -4.1169 -0.7816
12 6 2.3242 -4.7512 -1.9587
13 7 1.4301 -3.7932 -2.6529
14 6 1.8416 -3.1862 -3.7838
15 8 2.9429 -3.4232 -4.2331
16 6 0.9331 -2.2130 -4.4899
17 1 -0.0936 -2.5790 -4.4885
18 6 1.0128 -0.8224 -3.8307
19 8 1.5117 0.0418 -4.8972
20 6 1.7010 -0.6815 -6.0065
21 8 2.1108 -0.2054 -7.0467
22 7 1.3964 -1.9789 -5.8662
23 6 0.1260 -3.5119 -2.1213
24 6 0.1316 -2.3140 -1.1398
25 1 -0.4850 0.8401 0.0004
26 1 1.0755 -4.3350 0.3001
27 1 2.3380 -3.4390 1.1850
28 1 3.5522 -3.2783 -1.1100
29 1 3.5743 -4.8446 -0.2776
30 1 3.1076 -5.0751 -2.6438
31 1 1.7457 -5.6185 -1.6405
32 1 0.0251 -0.4975 -3.5036
33 1 1.7087 -0.8363 -2.9921
34 1 1.4692 -2.6536 -6.5592
35 1 -0.2393 -4.3952 -1.5974
36 1 -0.5505 -3.2887 -2.9462
37 1 -0.7499 -2.3637 -0.5005
38 1 0.1192 -1.3815 -1.7040
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981071580.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:25:39
Heat of formation + Delta-G solvation = -62.266316 kcal
Electronic energy + Delta-G solvation = -24436.506102 eV
Core-core repulsion = 20894.879817 eV
Total energy + Delta-G solvation = -3541.626285 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.136 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.64217 -39.68719 -37.24568 -36.88524 -34.59017 -34.46572 -32.99254 -31.06505
-29.53716 -27.84660 -25.91274 -24.22518 -23.84195 -22.27038 -22.07861 -19.93254
-18.98656 -18.11557 -17.74368 -16.94437 -16.42702 -16.13614 -15.72395 -15.30317
-14.53181 -14.36532 -14.16467 -14.06625 -13.68707 -13.64628 -13.36377 -13.02789
-12.68660 -12.46117 -12.06092 -12.00644 -11.54318 -11.12377 -10.88147 -10.67038
-10.62311 -10.55268 -10.35936 -10.34252 -10.13568 -10.00601 -9.83699 -9.08891
-8.63851 -8.32957 -6.86934 -5.95950 -3.38237 2.60490 2.64656 2.91763
3.19115 3.30582 3.41007 3.43405 3.73314 4.24167 4.38217 4.45650
4.68202 5.06507 5.14367 5.25373 5.33327 5.46909 5.50256 5.60592
5.77287 5.81749 5.88090 5.91203 6.09661 6.29616 6.36441 6.65636
6.69815 6.79762 6.88169 7.10376 7.23992 7.36761 7.63549 7.68332
8.17367 8.26887 8.30454 9.04812 9.70887 10.15895 11.11682
Molecular weight = 283.14amu
Principal moments of inertia in cm(-1)
A = 0.013682 B = 0.009286 C = 0.006453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2045.931597 B = 3014.636649 C = 4337.954721
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.907 5.907
2 C 0.007 3.993
3 Si 0.890 3.110
4 H -0.277 1.277
5 H -0.284 1.284
6 H -0.289 1.289
7 C -0.255 4.255
8 H 0.067 0.933
9 N -0.591 5.591
10 C 0.162 3.838
11 C -0.171 4.171
12 C 0.130 3.870
13 N -0.576 5.576
14 C 0.509 3.491
15 O -0.536 6.536
16 C 0.077 3.923
17 H 0.123 0.877
18 C 0.056 3.944
19 O -0.323 6.323
20 C 0.651 3.349
21 O -0.530 6.530
22 N -0.713 5.713
23 C 0.068 3.932
24 C 0.155 3.845
25 H 0.255 0.745
26 H 0.034 0.966
27 H 0.047 0.953
28 H 0.069 0.931
29 H 0.058 0.942
30 H 0.078 0.922
31 H 0.065 0.935
32 H 0.123 0.877
33 H 0.129 0.871
34 H 0.436 0.564
35 H 0.069 0.931
36 H 0.067 0.933
37 H 0.047 0.953
38 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.470 -9.523 -3.954 10.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.191 4.191
3 Si 0.720 3.280
4 H -0.202 1.202
5 H -0.210 1.210
6 H -0.216 1.216
7 C -0.385 4.385
8 H 0.084 0.916
9 N -0.313 5.313
10 C 0.033 3.967
11 C -0.212 4.212
12 C 0.009 3.991
13 N -0.308 5.308
14 C 0.294 3.706
15 O -0.414 6.414
16 C -0.033 4.033
17 H 0.140 0.860
18 C -0.019 4.019
19 O -0.233 6.233
20 C 0.404 3.596
21 O -0.415 6.415
22 N -0.384 5.384
23 C -0.057 4.057
24 C 0.029 3.971
25 H 0.065 0.935
26 H 0.053 0.947
27 H 0.066 0.934
28 H 0.088 0.912
29 H 0.076 0.924
30 H 0.096 0.904
31 H 0.083 0.917
32 H 0.141 0.859
33 H 0.146 0.854
34 H 0.278 0.722
35 H 0.087 0.913
36 H 0.085 0.915
37 H 0.065 0.935
38 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -2.776 -8.886 -4.536 10.355
hybrid contribution 0.322 0.420 0.049 0.531
sum -2.454 -8.466 -4.487 9.890
Atomic orbital electron populations
1.69997 1.04974 1.25564 1.54689 1.24942 0.95329 0.98107 1.00757
0.86401 0.79696 0.84225 0.77707 1.20234 1.20982 1.21583 1.19248
0.92256 0.84634 1.42368 0.91553 1.43648 1.29072 1.02156 1.56377
1.20299 0.93676 0.88327 0.94360 1.21877 1.00907 1.00877 0.97584
1.20626 0.93620 0.90272 0.94579 1.47429 1.17116 1.42678 1.23529
1.20332 0.87481 0.81316 0.81478 1.90699 1.20937 1.63137 1.66580
1.22367 0.99820 0.97520 0.83564 0.85990 1.24666 1.04309 0.83544
0.89333 1.87368 1.79213 1.35464 1.21207 1.18489 0.76578 0.80779
0.83733 1.91040 1.50460 1.74373 1.25662 1.45654 1.70417 1.09929
1.12446 1.22420 0.82840 1.01898 0.98556 1.22113 0.89506 0.94321
0.91111 0.93490 0.94740 0.93423 0.91231 0.92382 0.90374 0.91708
0.85908 0.85353 0.72151 0.91263 0.91503 0.93519 0.90054
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -22.74 10.91 55.49 0.61 -22.13 16
2 C 0.01 0.17 4.95 -17.43 -0.09 0.09 16
3 Si 0.89 20.52 29.58 -169.99 -5.03 15.49 16
4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
7 C -0.26 -6.18 9.27 -15.06 -0.14 -6.32 16
8 H 0.07 1.67 7.87 -52.49 -0.41 1.26 16
9 N -0.59 -12.26 2.54 -171.99 -0.44 -12.70 16
10 C 0.16 2.86 5.63 -5.24 -0.03 2.83 16
11 C -0.17 -2.72 5.64 -29.13 -0.16 -2.88 16
12 C 0.13 1.86 5.70 -5.87 -0.03 1.82 16
13 N -0.58 -8.56 2.46 -176.59 -0.43 -8.99 16
14 C 0.51 8.22 6.79 -10.98 -0.07 8.14 16
15 O -0.54 -10.45 16.02 5.56 0.09 -10.36 16
16 C 0.08 1.06 3.33 -68.19 -0.23 0.83 16
17 H 0.12 1.22 6.39 -51.93 -0.33 0.89 16
18 C 0.06 0.91 6.11 37.73 0.23 1.14 16
19 O -0.32 -6.03 11.10 -37.81 -0.42 -6.45 16
20 C 0.65 11.86 9.16 53.71 0.49 12.36 16
21 O -0.53 -11.18 18.04 -19.12 -0.34 -11.52 16
22 N -0.71 -10.27 5.64 -59.35 -0.33 -10.60 16
23 C 0.07 0.93 5.00 -4.58 -0.02 0.91 16
24 C 0.16 2.85 4.96 -1.75 -0.01 2.84 16
25 H 0.25 6.32 8.31 -40.82 -0.34 5.98 16
26 H 0.03 0.55 7.59 -51.93 -0.39 0.15 16
27 H 0.05 0.88 8.02 -51.93 -0.42 0.47 16
28 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16
29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
30 H 0.08 1.17 7.13 -51.93 -0.37 0.80 16
31 H 0.06 0.76 8.06 -51.93 -0.42 0.35 16
32 H 0.12 1.75 7.42 -51.93 -0.39 1.36 16
33 H 0.13 2.46 7.31 -51.93 -0.38 2.08 16
34 H 0.44 5.27 8.96 -40.82 -0.37 4.91 16
35 H 0.07 0.85 7.73 -51.93 -0.40 0.45 16
36 H 0.07 0.72 5.93 -51.93 -0.31 0.41 16
37 H 0.05 0.94 8.00 -51.93 -0.42 0.53 16
38 H 0.08 1.59 3.58 -51.93 -0.19 1.40 16
LS Contribution 302.49 15.07 4.56 4.56
Total: -1.00 -30.76 302.49 -6.56 -37.32
By element:
Atomic # 1 Polarization: 8.40 SS G_CDS: -4.75 Total: 3.64 kcal
Atomic # 6 Polarization: 21.81 SS G_CDS: -0.06 Total: 21.75 kcal
Atomic # 7 Polarization: -53.83 SS G_CDS: -0.60 Total: -54.43 kcal
Atomic # 8 Polarization: -27.65 SS G_CDS: -0.68 Total: -28.33 kcal
Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -30.76 -6.56 -37.32 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981071580.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.946 kcal
(2) G-P(sol) polarization free energy of solvation -30.758 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.704 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.266 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds