Wall clock time and date at job start Tue Mar 31 2020 02:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47004 * 264.65146 * 3 2 1 5 5 H 1.48489 * 109.47399 * 24.65503 * 3 2 1 6 6 H 1.48502 * 109.46846 * 144.65783 * 3 2 1 7 7 C 1.38808 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00467 * 336.25340 * 7 2 1 9 9 N 1.36939 * 120.00063 * 156.25914 * 7 2 1 10 10 C 1.47422 * 125.65410 * 161.83973 * 9 7 2 11 11 C 1.54902 * 104.83609 * 155.81900 * 10 9 7 12 12 C 1.55164 * 101.58151 * 37.01279 * 11 10 9 13 13 H 1.08998 * 110.72044 * 83.03150 * 12 11 10 14 14 C 1.52995 * 110.72036 * 206.13523 * 12 11 10 15 15 N 1.46496 * 109.47103 * 184.99792 * 14 12 11 16 16 C 1.34782 * 120.00285 * 180.02562 * 15 14 12 17 17 O 1.21284 * 119.99764 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00021 * 179.97438 * 16 15 14 19 19 H 1.08996 * 110.50959 * 38.71083 * 18 16 15 20 20 C 1.54087 * 110.69054 * 275.87722 * 18 16 15 21 21 O 1.45700 * 104.01131 * 241.16996 * 20 18 16 22 22 C 1.33770 * 109.47683 * 0.33997 * 21 20 18 23 23 O 1.21512 * 123.07376 * 179.89021 * 22 21 20 24 24 N 1.34005 * 113.85613 * 359.62758 * 22 21 20 25 25 C 1.47029 * 125.64552 * 341.78002 * 9 7 2 26 26 H 0.97008 * 119.99583 * 0.02562 * 1 2 3 27 27 H 1.09006 * 110.36538 * 36.98221 * 10 9 7 28 28 H 1.09003 * 110.45726 * 274.71287 * 10 9 7 29 29 H 1.09000 * 111.01128 * 278.93893 * 11 10 9 30 30 H 1.09002 * 111.03795 * 155.09738 * 11 10 9 31 31 H 1.09006 * 109.47386 * 64.99823 * 14 12 11 32 32 H 1.09003 * 109.47114 * 304.99427 * 14 12 11 33 33 H 0.96998 * 119.99919 * 359.97438 * 15 14 12 34 34 H 1.09003 * 110.52493 * 0.02562 * 20 18 16 35 35 H 1.09003 * 110.52250 * 122.73372 * 20 18 16 36 36 H 0.96997 * 125.55957 * 180.24826 * 24 22 21 37 37 H 1.08997 * 109.87783 * 61.69097 * 25 9 7 38 38 H 1.09001 * 109.88249 * 300.52552 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6107 1.9812 -1.3940 5 1 1.3959 2.6826 0.5840 6 1 3.4867 1.4754 0.8099 7 6 2.0102 -1.2022 0.0005 8 1 1.5388 -2.0977 0.3776 9 7 3.2926 -1.2526 -0.4769 10 6 4.2692 -2.3230 -0.2051 11 6 5.2610 -2.2662 -1.3936 12 6 5.3555 -0.7384 -1.6477 13 1 6.0739 -0.2783 -0.9692 14 6 5.7299 -0.4538 -3.1036 15 7 5.9282 0.9863 -3.2843 16 6 6.2660 1.4735 -4.4947 17 8 6.4063 0.7195 -5.4343 18 6 6.4695 2.9550 -4.6807 19 1 6.9706 3.3836 -3.8128 20 6 5.1237 3.6620 -4.9325 21 8 5.2766 4.2502 -6.2567 22 6 6.4889 3.9548 -6.7387 23 8 6.8761 4.3223 -7.8303 24 7 7.2394 3.2211 -5.9055 25 6 3.9233 -0.2488 -1.3465 26 1 -0.4850 0.8402 -0.0004 27 1 3.7709 -3.2920 -0.1730 28 1 4.7904 -2.1340 0.7334 29 1 4.8575 -2.7828 -2.2645 30 1 6.2313 -2.6763 -1.1135 31 1 4.9280 -0.7952 -3.7584 32 1 6.6510 -0.9814 -3.3516 33 1 5.8157 1.5894 -2.5329 34 1 4.3058 2.9415 -4.9228 35 1 4.9562 4.4410 -4.1886 36 1 8.1431 2.9156 -6.0812 37 1 3.9602 0.7134 -0.8357 38 1 3.3601 -0.1565 -2.2752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028520224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:55 Heat of formation + Delta-G solvation = -102.482990 kcal Electronic energy + Delta-G solvation = -22563.197859 eV Core-core repulsion = 19019.827648 eV Total energy + Delta-G solvation = -3543.370211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.92187 -40.74219 -39.48437 -38.39728 -36.19912 -35.76594 -34.49528 -32.40383 -31.04878 -29.99718 -27.48576 -25.98952 -24.75759 -23.59103 -22.27367 -21.80280 -21.33438 -19.37507 -19.09942 -18.86993 -18.21864 -17.79134 -17.27503 -16.97925 -16.27368 -16.13420 -15.60487 -15.41112 -15.33459 -15.04000 -14.96148 -14.55259 -14.34417 -14.17342 -13.63875 -13.29918 -13.20679 -12.94757 -12.63044 -12.33680 -12.14957 -12.09183 -11.93996 -11.81808 -11.58200 -11.52723 -11.18457 -10.70612 -10.41384 -10.20510 -9.04167 -8.15750 -5.41960 1.25177 1.28405 1.34681 1.43723 1.55181 1.58404 1.95418 2.45649 2.53972 3.02242 3.04710 3.34339 3.37023 3.68693 3.74772 3.85804 3.89487 4.00788 4.36275 4.39924 4.43251 4.49539 4.58647 4.67772 4.81541 4.88997 5.04962 5.12011 5.19794 5.31001 5.46829 5.62493 5.71516 6.01859 6.11919 6.36752 6.79795 6.85919 7.03949 7.56930 8.12509 9.04701 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.004525 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.575630 B = 6185.971983 C = 7211.336526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.048 4.048 3 Si 0.960 3.040 4 H -0.252 1.252 5 H -0.315 1.315 6 H -0.263 1.263 7 C -0.244 4.244 8 H 0.050 0.950 9 N -0.632 5.632 10 C 0.121 3.879 11 C -0.109 4.109 12 C -0.097 4.097 13 H 0.113 0.887 14 C 0.138 3.862 15 N -0.708 5.708 16 C 0.502 3.498 17 O -0.568 6.568 18 C 0.085 3.915 19 H 0.185 0.815 20 C 0.045 3.955 21 O -0.340 6.340 22 C 0.648 3.352 23 O -0.570 6.570 24 N -0.698 5.698 25 C 0.117 3.883 26 H 0.262 0.738 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.419 0.581 34 H 0.106 0.894 35 H 0.167 0.833 36 H 0.447 0.553 37 H 0.024 0.976 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.980 6.184 -3.341 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.242 4.242 3 Si 0.789 3.211 4 H -0.178 1.178 5 H -0.245 1.245 6 H -0.189 1.189 7 C -0.373 4.373 8 H 0.068 0.932 9 N -0.359 5.359 10 C -0.003 4.003 11 C -0.148 4.148 12 C -0.116 4.116 13 H 0.131 0.869 14 C 0.014 3.986 15 N -0.361 5.361 16 C 0.286 3.714 17 O -0.447 6.447 18 C -0.025 4.025 19 H 0.202 0.798 20 C -0.030 4.030 21 O -0.249 6.249 22 C 0.401 3.599 23 O -0.458 6.458 24 N -0.370 5.370 25 C -0.007 4.007 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.256 0.744 34 H 0.125 0.875 35 H 0.184 0.816 36 H 0.292 0.708 37 H 0.041 0.959 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 18.708 6.073 -4.598 20.199 hybrid contribution -0.363 0.390 0.544 0.762 sum 18.345 6.464 -4.054 19.868 Atomic orbital electron populations 1.70032 1.07728 1.27423 1.55543 1.25816 0.95929 1.01709 1.00781 0.85714 0.77483 0.78777 0.79156 1.17773 1.24459 1.18910 1.18602 0.87517 0.94479 1.36692 0.93189 1.44902 1.10312 1.24906 1.55791 1.21874 0.90166 0.91241 0.97043 1.22704 1.00129 0.94145 0.97818 1.22394 0.95222 0.97953 0.96079 0.86858 1.21328 1.01729 0.80575 0.94987 1.45940 1.69180 1.09526 1.11415 1.20981 0.76834 0.90848 0.82701 1.90779 1.51870 1.60543 1.41461 1.22618 0.94911 0.92469 0.92467 0.79845 1.24745 0.96137 1.00155 0.81920 1.87280 1.32006 1.70624 1.35019 1.18590 0.79748 0.77800 0.83775 1.91041 1.73412 1.60392 1.20935 1.45618 1.18798 1.55086 1.17480 1.21876 0.93549 0.92313 0.92948 0.92971 0.94356 0.94506 0.91209 0.87014 0.92971 0.89240 0.74413 0.87538 0.81552 0.70831 0.95879 0.96018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.55 13.97 21.65 0.30 -59.25 16 2 C -0.05 -2.74 5.43 84.86 0.46 -2.28 16 3 Si 0.96 42.39 24.40 68.60 1.67 44.06 16 4 H -0.25 -9.61 6.83 99.48 0.68 -8.93 16 5 H -0.32 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.26 -10.80 6.89 99.48 0.69 -10.11 16 7 C -0.24 -13.65 10.56 84.03 0.89 -12.77 16 8 H 0.05 3.10 8.06 -2.91 -0.02 3.07 16 9 N -0.63 -27.90 3.21 -691.98 -2.22 -30.12 16 10 C 0.12 4.08 7.23 86.85 0.63 4.71 16 11 C -0.11 -2.53 6.53 31.99 0.21 -2.32 16 12 C -0.10 -2.17 2.96 -9.60 -0.03 -2.20 16 13 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 14 C 0.14 2.70 5.02 86.38 0.43 3.14 16 15 N -0.71 -10.73 5.47 -463.06 -2.53 -13.26 16 16 C 0.50 8.79 6.94 87.66 0.61 9.39 16 17 O -0.57 -15.69 16.60 -3.04 -0.05 -15.74 16 18 C 0.08 0.89 4.17 44.50 0.19 1.07 16 19 H 0.18 -0.02 8.14 -2.39 -0.02 -0.04 16 20 C 0.04 0.53 7.87 72.35 0.57 1.10 16 21 O -0.34 -7.60 11.09 -47.30 -0.52 -8.12 16 22 C 0.65 16.23 9.16 129.91 1.19 17.42 16 23 O -0.57 -19.36 18.04 19.65 0.35 -19.00 16 24 N -0.70 -11.38 5.66 -573.42 -3.24 -14.62 16 25 C 0.12 4.11 4.69 86.73 0.41 4.52 16 26 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 27 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.68 8.05 -2.39 -0.02 1.66 16 30 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.31 7.93 -2.38 -0.02 1.29 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.42 4.04 8.47 -92.71 -0.79 3.26 16 34 H 0.11 1.45 7.73 -2.39 -0.02 1.44 16 35 H 0.17 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.45 6.00 8.96 -92.71 -0.83 5.16 16 37 H 0.02 0.83 3.53 -2.39 -0.01 0.82 16 38 H 0.02 0.85 7.68 -2.39 -0.02 0.83 16 Total: -1.00 -85.56 315.54 -1.25 -86.80 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -0.56 Total: 7.46 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 5.55 Total: 21.79 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -7.69 Total: -117.25 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -0.22 Total: -42.87 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.67 Total: 44.06 kcal Total: -85.56 -1.25 -86.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028520224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.680 kcal (2) G-P(sol) polarization free energy of solvation -85.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds