Wall clock time and date at job start Tue Mar 31 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99946 * 2 1 4 4 H 1.48506 * 109.46911 * 90.00096 * 3 2 1 5 5 H 1.48504 * 109.47325 * 209.99564 * 3 2 1 6 6 H 1.48498 * 109.47550 * 329.99916 * 3 2 1 7 7 C 1.38812 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00124 * 23.03677 * 7 2 1 9 9 N 1.36932 * 120.00174 * 203.03262 * 7 2 1 10 10 C 1.47176 * 136.00176 * 9.44815 * 9 7 2 11 11 C 1.52636 * 87.94773 * 206.72438 * 10 9 7 12 12 C 1.47161 * 135.99916 * 189.81274 * 9 7 2 13 13 C 1.52792 * 114.14551 * 220.83486 * 11 10 9 14 14 N 1.47356 * 108.04485 * 178.99409 * 13 11 10 15 15 C 1.34777 * 121.05713 * 228.23048 * 14 13 11 16 16 O 1.21280 * 120.00571 * 359.97438 * 15 14 13 17 17 C 1.50710 * 119.99627 * 179.97438 * 15 14 13 18 18 C 1.50700 * 109.46634 * 179.97438 * 17 15 14 19 19 N 1.34784 * 119.99432 * 180.02562 * 18 17 15 20 20 O 1.21274 * 120.00712 * 359.97438 * 18 17 15 21 21 C 1.47131 * 117.87990 * 48.24596 * 14 13 11 22 22 C 1.53223 * 108.72910 * 307.70847 * 21 14 13 23 23 O 1.42357 * 114.14627 * 88.43617 * 11 10 9 24 24 H 0.96997 * 119.99623 * 174.66515 * 1 2 3 25 25 H 1.09002 * 113.48842 * 321.42775 * 10 9 7 26 26 H 1.09002 * 113.48977 * 91.93113 * 10 9 7 27 27 H 1.09002 * 113.49270 * 268.06803 * 12 9 7 28 28 H 1.08998 * 113.49392 * 38.52261 * 12 9 7 29 29 H 1.09001 * 109.74610 * 298.62832 * 13 11 10 30 30 H 1.09002 * 109.74700 * 59.30724 * 13 11 10 31 31 H 1.09001 * 109.46730 * 299.99571 * 17 15 14 32 32 H 1.08994 * 109.47107 * 59.99462 * 17 15 14 33 33 H 0.96999 * 119.99895 * 359.97438 * 19 18 17 34 34 H 0.97000 * 119.99398 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.58915 * 67.48202 * 21 14 13 36 36 H 1.08997 * 109.59426 * 187.93310 * 21 14 13 37 37 H 1.08997 * 109.49358 * 174.15890 * 22 21 14 38 38 H 1.09003 * 109.49228 * 294.22945 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.5349 -2.1004 -0.3651 9 7 3.2977 -1.2492 0.4645 10 6 4.2015 -0.3299 1.1746 11 6 5.3710 -1.0703 0.5313 12 6 4.3868 -2.2389 0.4662 13 6 6.5537 -1.3058 1.4696 14 7 7.5874 -2.0455 0.7242 15 6 8.1758 -3.1382 1.2499 16 8 7.8569 -3.5269 2.3536 17 6 9.2300 -3.8769 0.4663 18 6 9.7242 -5.0508 1.2718 19 7 10.6763 -5.8609 0.7679 20 8 9.2659 -5.2660 2.3739 21 6 7.9571 -1.5530 -0.6121 22 6 6.6822 -1.3895 -1.4462 23 8 5.7565 -0.5577 -0.7396 24 1 -0.4849 -0.8364 -0.0781 25 1 4.1122 0.7061 0.8475 26 1 4.1642 -0.4351 2.2589 27 1 4.4005 -2.8684 1.3560 28 1 4.4534 -2.8133 -0.4577 29 1 6.9546 -0.3489 1.8040 30 1 6.2300 -1.8906 2.3306 31 1 8.8029 -4.2331 -0.4712 32 1 10.0623 -3.2058 0.2545 33 1 11.0431 -5.6885 -0.1134 34 1 10.9946 -6.6162 1.2866 35 1 8.4600 -0.5903 -0.5205 36 1 8.6206 -2.2701 -1.0953 37 1 6.9297 -0.9279 -2.4021 38 1 6.2332 -2.3675 -1.6197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053198407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:30 Heat of formation + Delta-G solvation = -28.614003 kcal Electronic energy + Delta-G solvation = -23194.702845 eV Core-core repulsion = 19654.535834 eV Total energy + Delta-G solvation = -3540.167011 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82445 -39.80980 -38.36461 -36.57349 -34.64559 -33.88252 -32.48643 -31.15997 -30.03222 -27.97532 -25.94579 -25.53330 -23.43150 -22.05192 -21.03274 -19.44884 -18.97999 -17.81606 -17.58873 -17.45109 -16.49669 -16.21091 -16.11219 -15.58996 -15.24953 -14.74577 -14.59785 -14.13647 -13.84110 -13.69627 -13.59832 -13.26166 -13.11777 -12.79148 -12.28019 -12.17048 -11.61909 -11.31790 -11.18351 -10.77612 -10.67564 -10.45966 -10.20638 -9.94464 -9.73510 -9.57551 -9.36492 -9.02513 -8.54524 -8.45704 -7.14105 -6.30283 -3.15950 2.37055 2.59142 2.63799 3.32321 3.46949 3.59842 3.76100 3.81307 4.14092 4.54843 4.61851 4.66164 4.72873 4.78407 4.82731 4.86364 4.93003 5.08372 5.19528 5.43360 5.57952 5.61165 5.71567 5.88598 6.09906 6.20341 6.23944 6.28132 6.39645 6.48502 6.52744 6.98530 7.14829 7.27152 7.53694 7.99450 8.17879 8.28845 9.00376 9.55939 10.41842 11.20293 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.034405 B = 0.004321 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.635831 B = 6478.918527 C = 6756.531561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.057 2.943 4 H -0.293 1.293 5 H -0.274 1.274 6 H -0.296 1.296 7 C -0.310 4.310 8 H 0.078 0.922 9 N -0.614 5.614 10 C 0.121 3.879 11 C 0.057 3.943 12 C 0.105 3.895 13 C 0.104 3.896 14 N -0.616 5.616 15 C 0.515 3.485 16 O -0.493 6.493 17 C -0.166 4.166 18 C 0.514 3.486 19 N -0.862 5.862 20 O -0.494 6.494 21 C 0.072 3.928 22 C 0.044 3.956 23 O -0.334 6.334 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.399 0.601 34 H 0.402 0.598 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.394 -6.264 -4.567 26.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.218 4.218 3 Si 0.888 3.112 4 H -0.221 1.221 5 H -0.200 1.200 6 H -0.224 1.224 7 C -0.436 4.436 8 H 0.096 0.904 9 N -0.342 5.342 10 C -0.005 4.005 11 C 0.015 3.985 12 C -0.022 4.022 13 C -0.019 4.019 14 N -0.352 5.352 15 C 0.300 3.700 16 O -0.366 6.366 17 C -0.209 4.209 18 C 0.297 3.703 19 N -0.428 5.428 20 O -0.366 6.366 21 C -0.051 4.051 22 C -0.034 4.034 23 O -0.252 6.252 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.227 0.773 34 H 0.233 0.767 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 24.231 -4.658 -3.333 24.899 hybrid contribution 0.701 -2.159 -0.536 2.332 sum 24.932 -6.817 -3.869 26.135 Atomic orbital electron populations 1.70946 1.05618 1.29847 1.50012 1.25737 0.96180 1.00892 0.99008 0.83886 0.74961 0.75658 0.76666 1.22098 1.20011 1.22403 1.19929 0.85298 0.96607 1.41754 0.90440 1.45643 1.11171 1.12862 1.64516 1.22538 0.85632 0.96510 0.95836 1.23057 0.91924 0.98732 0.84807 1.22853 0.86983 0.93023 0.99351 1.22130 0.87337 0.96794 0.95648 1.48191 1.40542 1.28406 1.18063 1.19885 0.82749 0.80404 0.86964 1.90869 1.61785 1.64621 1.19278 1.21625 1.00570 0.97703 1.01012 1.20014 0.79623 0.83711 0.86996 1.43861 1.43269 1.32887 1.22742 1.90928 1.55032 1.71094 1.19500 1.22459 0.98364 1.00822 0.83447 1.22922 0.88636 0.96653 0.95178 1.88021 1.61899 1.45424 1.29837 0.92816 0.92299 0.92288 0.93350 0.93715 0.90657 0.87659 0.86014 0.86081 0.77346 0.76662 0.90259 0.89221 0.87762 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.64 13.70 55.49 0.76 -28.88 16 2 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 3 Si 1.06 27.31 25.33 -169.99 -4.31 23.01 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.27 -6.77 6.56 56.52 0.37 -6.40 16 6 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 7 C -0.31 -9.24 10.96 -15.06 -0.17 -9.41 16 8 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 9 N -0.61 -15.81 3.58 -184.98 -0.66 -16.47 16 10 C 0.12 2.65 6.58 -8.36 -0.05 2.59 16 11 C 0.06 1.04 1.27 -90.96 -0.12 0.93 16 12 C 0.10 2.20 7.91 -8.22 -0.07 2.14 16 13 C 0.10 1.57 5.84 -3.68 -0.02 1.55 16 14 N -0.62 -7.70 3.03 -172.47 -0.52 -8.22 16 15 C 0.51 6.85 7.71 -10.98 -0.08 6.77 16 16 O -0.49 -9.16 13.68 -18.96 -0.26 -9.42 16 17 C -0.17 -1.28 4.55 -29.03 -0.13 -1.42 16 18 C 0.51 5.30 8.09 -10.98 -0.09 5.21 16 19 N -0.86 -4.55 8.87 31.22 0.28 -4.27 16 20 O -0.49 -8.23 15.02 -18.95 -0.28 -8.51 16 21 C 0.07 0.64 6.50 -3.58 -0.02 0.62 16 22 C 0.04 0.52 6.90 37.27 0.26 0.78 16 23 O -0.33 -6.00 10.53 -35.23 -0.37 -6.37 16 24 H 0.26 8.29 8.73 -40.82 -0.36 7.94 16 25 H 0.06 1.35 3.74 -51.93 -0.19 1.16 16 26 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 27 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 28 H 0.04 0.93 7.36 -51.93 -0.38 0.55 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.11 1.73 6.90 -51.93 -0.36 1.38 16 31 H 0.12 0.59 7.69 -51.93 -0.40 0.19 16 32 H 0.12 0.50 7.98 -51.93 -0.41 0.09 16 33 H 0.40 0.61 8.83 -40.82 -0.36 0.25 16 34 H 0.40 1.96 8.93 -40.82 -0.36 1.59 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.43 6.03 -51.93 -0.31 0.12 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.70 7.30 -51.93 -0.38 0.32 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -41.38 308.32 -6.18 -47.56 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.87 Total: -2.19 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -0.59 Total: 9.12 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.15 Total: -57.84 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.91 Total: -24.30 kcal Atomic # 14 Polarization: 27.31 SS G_CDS: -4.31 Total: 23.01 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -41.38 -6.18 -47.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053198407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.945 kcal (2) G-P(sol) polarization free energy of solvation -41.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds