Wall clock time and date at job start Tue Mar 31 2020 02:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99605 * 2 1 4 4 H 1.48497 * 109.46723 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47205 * 299.99694 * 3 2 1 6 6 H 1.48495 * 109.46874 * 60.00283 * 3 2 1 7 7 C 1.38812 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99868 * 163.99678 * 7 2 1 9 9 N 1.36937 * 119.99914 * 343.98873 * 7 2 1 10 10 C 1.47177 * 121.21806 * 332.38192 * 9 7 2 11 11 C 1.53224 * 108.69754 * 230.95663 * 10 9 7 12 12 O 1.43076 * 109.44900 * 308.42308 * 11 10 9 13 13 C 1.42685 * 113.88022 * 61.64173 * 12 11 10 14 14 H 1.09004 * 108.92296 * 54.94744 * 13 12 11 15 15 C 1.52498 * 110.62654 * 174.64943 * 13 12 11 16 16 C 1.53159 * 109.79665 * 61.32037 * 15 13 12 17 17 N 1.46982 * 108.44167 * 54.53083 * 16 15 13 18 18 C 1.34779 * 120.72435 * 125.42879 * 17 16 15 19 19 O 1.21347 * 119.99745 * 173.01343 * 18 17 16 20 20 C 1.49452 * 119.99949 * 353.00829 * 18 17 16 21 21 N 1.34778 * 119.99856 * 173.36885 * 20 18 17 22 22 O 1.21348 * 120.00063 * 353.36439 * 20 18 17 23 23 C 1.46796 * 118.55315 * 305.44419 * 17 16 15 24 24 C 1.47584 * 121.22088 * 152.40608 * 9 7 2 25 25 H 1.08990 * 111.16780 * 7.19823 * 24 9 7 26 26 H 0.97000 * 119.99671 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.59862 * 111.19419 * 10 9 7 28 28 H 1.09005 * 109.60310 * 350.72445 * 10 9 7 29 29 H 1.09000 * 109.47594 * 188.42639 * 11 10 9 30 30 H 1.08998 * 109.47894 * 68.41429 * 11 10 9 31 31 H 1.09003 * 109.42105 * 181.41810 * 15 13 12 32 32 H 1.08995 * 109.41864 * 301.21854 * 15 13 12 33 33 H 1.09010 * 109.64093 * 174.21394 * 16 15 13 34 34 H 1.09003 * 109.64160 * 294.84271 * 16 15 13 35 35 H 0.96998 * 119.99995 * 0.02562 * 21 20 18 36 36 H 0.97000 * 119.99883 * 179.97438 * 21 20 18 37 37 H 1.08994 * 109.52183 * 174.21014 * 23 17 16 38 38 H 1.09006 * 109.51530 * 294.32917 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0590 -1.2201 -0.2584 9 7 1.3655 -2.3652 0.3260 10 6 0.1986 -2.3645 1.2229 11 6 0.4274 -3.4015 2.3275 12 8 0.7822 -4.6557 1.7374 13 6 1.9908 -4.6164 0.9801 14 1 2.7917 -4.2328 1.6121 15 6 2.3676 -6.0129 0.4970 16 6 1.2658 -6.5613 -0.4147 17 7 1.0303 -5.5921 -1.4942 18 6 1.0989 -5.9701 -2.7861 19 8 0.7791 -5.1946 -3.6629 20 6 1.5688 -7.3443 -3.1386 21 7 1.5114 -7.7690 -4.4165 22 8 2.0021 -8.0777 -2.2744 23 6 0.7191 -4.2033 -1.1347 24 6 1.8156 -3.6653 -0.2080 25 1 2.7542 -3.5635 -0.7524 26 1 -0.4849 0.8401 -0.0004 27 1 -0.6969 -2.6236 0.6580 28 1 0.0799 -1.3765 1.6678 29 1 -0.4862 -3.5194 2.9101 30 1 1.2336 -3.0659 2.9798 31 1 3.3052 -5.9641 -0.0569 32 1 2.4893 -6.6729 1.3558 33 1 1.5825 -7.5138 -0.8400 34 1 0.3499 -6.6996 0.1599 35 1 1.1655 -7.1826 -5.1073 36 1 1.8168 -8.6607 -4.6453 37 1 0.6743 -3.5946 -2.0377 38 1 -0.2425 -4.1664 -0.6226 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074327296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:58 Heat of formation + Delta-G solvation = -63.007528 kcal Electronic energy + Delta-G solvation = -23846.965509 eV Core-core repulsion = 20305.307082 eV Total energy + Delta-G solvation = -3541.658427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79467 -39.20979 -38.04548 -35.99712 -34.63871 -33.76918 -31.73128 -31.49579 -29.50332 -27.61368 -25.92928 -23.95827 -23.42180 -22.67145 -21.37321 -20.12791 -18.56827 -17.75913 -17.12161 -16.94189 -16.19724 -15.78283 -15.42935 -15.11778 -15.02730 -14.70296 -14.45472 -13.91422 -13.76733 -13.47048 -13.18223 -12.79551 -12.44977 -12.27114 -12.00199 -11.42996 -11.26382 -11.07173 -10.85948 -10.74299 -10.52820 -10.24905 -10.22006 -10.03520 -10.03130 -9.64228 -9.03547 -8.92558 -8.63560 -8.31658 -6.77364 -5.89032 -3.34236 1.46520 2.59745 3.29177 3.32282 3.40217 3.42271 3.80576 4.35858 4.40534 4.47851 5.13635 5.27128 5.30634 5.43454 5.61702 5.70448 5.82146 5.90751 5.99585 6.09977 6.13076 6.23406 6.32482 6.33954 6.42597 6.53393 6.65157 6.68145 6.83258 6.90636 7.06795 7.45499 7.55351 7.69138 7.83189 7.91255 8.12191 8.28602 9.05922 9.67044 10.25252 11.18428 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.005625 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.735731 B = 4976.676743 C = 5749.523600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.582 5.582 10 C 0.138 3.862 11 C 0.039 3.961 12 O -0.386 6.386 13 C 0.078 3.922 14 H 0.052 0.948 15 C -0.117 4.117 16 C 0.056 3.944 17 N -0.567 5.567 18 C 0.496 3.504 19 O -0.528 6.528 20 C 0.519 3.481 21 N -0.823 5.823 22 O -0.515 6.515 23 C 0.100 3.900 24 C 0.135 3.865 25 H 0.075 0.925 26 H 0.256 0.744 27 H 0.029 0.971 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.148 0.852 34 H 0.070 0.930 35 H 0.414 0.586 36 H 0.408 0.592 37 H 0.090 0.910 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 -14.155 -2.504 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.305 5.305 10 C 0.013 3.987 11 C -0.039 4.039 12 O -0.305 6.305 13 C 0.018 3.982 14 H 0.070 0.930 15 C -0.155 4.155 16 C -0.065 4.065 17 N -0.299 5.299 18 C 0.277 3.723 19 O -0.405 6.405 20 C 0.299 3.701 21 N -0.388 5.388 22 O -0.392 6.392 23 C -0.023 4.023 24 C 0.026 3.974 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.164 0.836 34 H 0.088 0.912 35 H 0.245 0.755 36 H 0.240 0.760 37 H 0.109 0.891 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.052 -14.013 -2.254 14.340 hybrid contribution 0.383 1.225 -0.405 1.346 sum 2.436 -12.788 -2.658 13.286 Atomic orbital electron populations 1.70028 1.05289 1.25721 1.53235 1.25102 0.95354 0.98542 1.00242 0.86169 0.79353 0.83579 0.77349 1.20171 1.21558 1.21442 1.19214 0.92290 0.84019 1.43058 0.91315 1.44290 1.34315 1.01052 1.50812 1.21464 0.89133 0.98291 0.89856 1.23326 0.98995 0.85222 0.96386 1.87731 1.41999 1.32481 1.68321 1.22281 0.87277 0.95057 0.93562 0.93041 1.21716 0.98698 0.95727 0.99392 1.23093 0.99351 0.95301 0.88781 1.48243 1.65201 1.11966 1.04524 1.19857 0.80735 0.87650 0.84026 1.90766 1.48485 1.53864 1.47414 1.20484 0.78201 0.88111 0.83293 1.43585 1.65837 1.20165 1.09196 1.90379 1.45905 1.56962 1.45963 1.22567 1.00538 0.78512 1.00701 1.21608 0.96299 0.87264 0.92202 0.90681 0.93443 0.95249 0.88759 0.90127 0.94087 0.90613 0.90421 0.83569 0.91171 0.75501 0.76011 0.89150 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 11.19 55.49 0.62 -24.78 16 2 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 3 Si 0.91 21.32 29.58 -169.99 -5.03 16.29 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.26 -6.87 9.70 -15.06 -0.15 -7.01 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 N -0.58 -14.19 2.71 -163.88 -0.44 -14.63 16 10 C 0.14 3.20 4.92 -3.56 -0.02 3.18 16 11 C 0.04 0.74 6.97 37.27 0.26 1.00 16 12 O -0.39 -7.36 9.59 -35.23 -0.34 -7.69 16 13 C 0.08 1.42 2.72 -26.89 -0.07 1.35 16 14 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 15 C -0.12 -1.74 5.82 -26.91 -0.16 -1.90 16 16 C 0.06 0.85 6.09 -3.70 -0.02 0.82 16 17 N -0.57 -9.78 2.96 -173.28 -0.51 -10.29 16 18 C 0.50 8.17 7.75 -11.58 -0.09 8.08 16 19 O -0.53 -9.95 15.94 5.50 0.09 -9.86 16 20 C 0.52 6.77 8.05 -11.58 -0.09 6.68 16 21 N -0.82 -7.21 8.87 30.91 0.27 -6.93 16 22 O -0.51 -7.31 13.95 5.50 0.08 -7.23 16 23 C 0.10 2.05 5.60 -3.72 -0.02 2.03 16 24 C 0.13 2.83 3.00 -67.08 -0.20 2.63 16 25 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.03 0.73 7.17 -51.93 -0.37 0.35 16 28 H 0.09 2.41 6.21 -51.93 -0.32 2.08 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.15 2.12 3.82 -56.62 -0.22 1.90 16 34 H 0.07 1.09 7.95 -51.93 -0.41 0.67 16 35 H 0.41 3.25 8.32 -40.82 -0.34 2.91 16 36 H 0.41 2.46 8.93 -40.82 -0.36 2.10 16 37 H 0.09 2.09 7.04 -51.93 -0.37 1.72 16 38 H 0.07 1.62 6.57 -51.93 -0.34 1.28 16 LS Contribution 302.61 15.07 4.56 4.56 Total: -1.00 -30.94 302.61 -6.16 -37.10 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.81 Total: 6.53 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: -0.65 Total: 16.96 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.06 Total: -56.64 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.17 Total: -24.79 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.94 -6.16 -37.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074327296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.908 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds