Wall clock time and date at job start Tue Mar 31 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99605 * 2 1 4 4 H 1.48497 * 109.46723 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47205 * 299.99694 * 3 2 1 6 6 H 1.48495 * 109.46874 * 60.00283 * 3 2 1 7 7 C 1.38812 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99868 * 163.99678 * 7 2 1 9 9 N 1.36937 * 119.99914 * 343.98873 * 7 2 1 10 10 C 1.47177 * 121.21806 * 332.38192 * 9 7 2 11 11 C 1.53224 * 108.69754 * 230.95663 * 10 9 7 12 12 O 1.43076 * 109.44900 * 308.42308 * 11 10 9 13 13 C 1.42685 * 113.88022 * 61.64173 * 12 11 10 14 14 H 1.09004 * 108.92296 * 54.94744 * 13 12 11 15 15 C 1.52498 * 110.62654 * 174.64943 * 13 12 11 16 16 C 1.53159 * 109.79665 * 61.32037 * 15 13 12 17 17 N 1.46982 * 108.44167 * 54.53083 * 16 15 13 18 18 C 1.34779 * 120.72435 * 125.42879 * 17 16 15 19 19 O 1.21347 * 119.99745 * 173.01343 * 18 17 16 20 20 C 1.49452 * 119.99949 * 353.00829 * 18 17 16 21 21 N 1.34778 * 119.99856 * 173.36885 * 20 18 17 22 22 O 1.21348 * 120.00063 * 353.36439 * 20 18 17 23 23 C 1.46796 * 118.55315 * 305.44419 * 17 16 15 24 24 C 1.47584 * 121.22088 * 152.40608 * 9 7 2 25 25 H 1.08990 * 111.16780 * 7.19823 * 24 9 7 26 26 H 0.97000 * 119.99671 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.59862 * 111.19419 * 10 9 7 28 28 H 1.09005 * 109.60310 * 350.72445 * 10 9 7 29 29 H 1.09000 * 109.47594 * 188.42639 * 11 10 9 30 30 H 1.08998 * 109.47894 * 68.41429 * 11 10 9 31 31 H 1.09003 * 109.42105 * 181.41810 * 15 13 12 32 32 H 1.08995 * 109.41864 * 301.21854 * 15 13 12 33 33 H 1.09010 * 109.64093 * 174.21394 * 16 15 13 34 34 H 1.09003 * 109.64160 * 294.84271 * 16 15 13 35 35 H 0.96998 * 119.99995 * 0.02562 * 21 20 18 36 36 H 0.97000 * 119.99883 * 179.97438 * 21 20 18 37 37 H 1.08994 * 109.52183 * 174.21014 * 23 17 16 38 38 H 1.09006 * 109.51530 * 294.32917 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0590 -1.2201 -0.2584 9 7 1.3655 -2.3652 0.3260 10 6 0.1986 -2.3645 1.2229 11 6 0.4274 -3.4015 2.3275 12 8 0.7822 -4.6557 1.7374 13 6 1.9908 -4.6164 0.9801 14 1 2.7917 -4.2328 1.6121 15 6 2.3676 -6.0129 0.4970 16 6 1.2658 -6.5613 -0.4147 17 7 1.0303 -5.5921 -1.4942 18 6 1.0989 -5.9701 -2.7861 19 8 0.7791 -5.1946 -3.6629 20 6 1.5688 -7.3443 -3.1386 21 7 1.5114 -7.7690 -4.4165 22 8 2.0021 -8.0777 -2.2744 23 6 0.7191 -4.2033 -1.1347 24 6 1.8156 -3.6653 -0.2080 25 1 2.7542 -3.5635 -0.7524 26 1 -0.4849 0.8401 -0.0004 27 1 -0.6969 -2.6236 0.6580 28 1 0.0799 -1.3765 1.6678 29 1 -0.4862 -3.5194 2.9101 30 1 1.2336 -3.0659 2.9798 31 1 3.3052 -5.9641 -0.0569 32 1 2.4893 -6.6729 1.3558 33 1 1.5825 -7.5138 -0.8400 34 1 0.3499 -6.6996 0.1599 35 1 1.1655 -7.1826 -5.1073 36 1 1.8168 -8.6607 -4.6453 37 1 0.6743 -3.5946 -2.0377 38 1 -0.2425 -4.1664 -0.6226 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074327296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:57 Heat of formation + Delta-G solvation = -88.053437 kcal Electronic energy + Delta-G solvation = -23848.051581 eV Core-core repulsion = 20305.307082 eV Total energy + Delta-G solvation = -3542.744499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.07476 -40.65408 -39.34939 -37.41507 -36.45485 -34.74412 -33.46794 -33.09843 -31.10798 -29.40172 -27.35536 -25.65993 -24.89512 -24.21701 -22.90330 -21.38500 -20.09153 -19.06701 -18.74404 -18.24873 -17.47606 -17.17719 -17.07722 -16.77978 -16.22840 -16.18514 -16.06355 -15.50275 -15.16155 -14.93612 -14.77729 -14.39830 -14.04612 -13.86956 -13.42413 -13.08902 -12.93804 -12.77984 -12.57951 -12.35832 -12.20806 -12.03182 -11.88362 -11.72524 -11.25005 -10.92770 -10.77496 -10.54424 -10.18930 -9.82404 -8.72319 -7.93849 -5.42735 0.28725 1.37263 1.44570 1.46266 1.56412 2.08296 2.43705 2.64645 2.90679 3.21515 3.40556 3.46374 3.81856 4.07844 4.11599 4.19930 4.25800 4.43303 4.52924 4.56409 4.61350 4.82551 4.84146 4.94246 4.95292 5.01067 5.18783 5.27514 5.31118 5.53727 5.58853 5.78201 5.91437 6.24885 6.25497 6.35549 6.71362 7.01048 7.03208 7.68789 8.24435 9.11278 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.005625 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.735731 B = 4976.676743 C = 5749.523600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.042 4.042 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.286 1.286 7 C -0.268 4.268 8 H 0.067 0.933 9 N -0.599 5.599 10 C 0.145 3.855 11 C 0.051 3.949 12 O -0.384 6.384 13 C 0.083 3.917 14 H 0.051 0.949 15 C -0.110 4.110 16 C 0.059 3.941 17 N -0.571 5.571 18 C 0.491 3.509 19 O -0.558 6.558 20 C 0.529 3.471 21 N -0.793 5.793 22 O -0.523 6.523 23 C 0.118 3.882 24 C 0.132 3.868 25 H 0.067 0.933 26 H 0.252 0.748 27 H 0.004 0.996 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.164 0.836 34 H 0.068 0.932 35 H 0.422 0.578 36 H 0.427 0.573 37 H 0.054 0.946 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 -16.291 -2.294 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.212 1.212 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.322 5.322 10 C 0.020 3.980 11 C -0.027 4.027 12 O -0.303 6.303 13 C 0.024 3.976 14 H 0.069 0.931 15 C -0.148 4.148 16 C -0.061 4.061 17 N -0.303 5.303 18 C 0.273 3.727 19 O -0.437 6.437 20 C 0.308 3.692 21 N -0.360 5.360 22 O -0.402 6.402 23 C -0.006 4.006 24 C 0.024 3.976 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.022 0.978 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.180 0.820 34 H 0.087 0.913 35 H 0.254 0.746 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.323 -16.218 -2.071 16.684 hybrid contribution -0.018 1.839 -0.580 1.928 sum 3.305 -14.379 -2.650 14.990 Atomic orbital electron populations 1.70174 1.06632 1.26087 1.54668 1.25824 0.96075 1.01477 1.00488 0.85182 0.78587 0.79623 0.76874 1.19131 1.22059 1.21199 1.19488 0.92484 0.85304 1.42451 0.91513 1.44485 1.34359 1.01706 1.51689 1.21298 0.88045 0.98218 0.90467 1.23186 1.00548 0.84131 0.94859 1.87747 1.42428 1.31894 1.68189 1.22306 0.86927 0.96435 0.91979 0.93067 1.21751 0.98849 0.93785 1.00436 1.23275 0.99458 0.95146 0.88216 1.48243 1.65483 1.10836 1.05779 1.20561 0.79731 0.89134 0.83238 1.90751 1.49524 1.55255 1.48143 1.19692 0.78688 0.86266 0.84584 1.43368 1.64011 1.20995 1.07615 1.90358 1.46862 1.56421 1.46534 1.21996 0.99522 0.80438 0.98674 1.21735 0.95693 0.86621 0.93568 0.91453 0.93842 0.97787 0.91474 0.87355 0.93515 0.89512 0.87539 0.81996 0.91333 0.74627 0.73753 0.92708 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.45 11.19 21.65 0.24 -54.21 16 2 C -0.04 -2.35 4.96 84.86 0.42 -1.92 16 3 Si 0.97 44.61 29.58 68.60 2.03 46.64 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.27 -14.67 9.70 84.03 0.82 -13.85 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 9 N -0.60 -29.99 2.71 -672.39 -1.82 -31.81 16 10 C 0.15 6.93 4.92 86.33 0.42 7.36 16 11 C 0.05 1.90 6.97 72.06 0.50 2.40 16 12 O -0.38 -14.01 9.59 -148.98 -1.43 -15.44 16 13 C 0.08 2.90 2.72 30.49 0.08 2.99 16 14 H 0.05 1.82 8.12 -2.38 -0.02 1.81 16 15 C -0.11 -2.97 5.82 30.48 0.18 -2.79 16 16 C 0.06 1.65 6.09 86.34 0.53 2.18 16 17 N -0.57 -19.43 2.96 -820.48 -2.43 -21.86 16 18 C 0.49 15.80 7.75 87.27 0.68 16.47 16 19 O -0.56 -21.17 15.94 -3.24 -0.05 -21.22 16 20 C 0.53 12.53 8.05 87.27 0.70 13.24 16 21 N -0.79 -11.60 8.87 -174.50 -1.55 -13.15 16 22 O -0.52 -13.22 13.95 -3.24 -0.05 -13.26 16 23 C 0.12 5.00 5.60 86.43 0.48 5.49 16 24 C 0.13 5.58 3.00 44.95 0.13 5.72 16 25 H 0.07 2.92 8.03 -2.39 -0.02 2.90 16 26 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.00 0.21 7.17 -2.39 -0.02 0.19 16 28 H 0.07 3.56 6.21 -2.38 -0.01 3.54 16 29 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.16 4.20 3.82 -76.73 -0.29 3.90 16 34 H 0.07 1.97 7.95 -2.39 -0.02 1.95 16 35 H 0.42 5.56 8.32 -92.71 -0.77 4.79 16 36 H 0.43 3.62 8.93 -92.71 -0.83 2.79 16 37 H 0.05 2.67 7.04 -2.39 -0.02 2.66 16 38 H 0.06 2.55 6.57 -2.38 -0.02 2.53 16 Total: -1.00 -68.53 302.61 -0.87 -69.40 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.76 Total: 17.64 kcal Atomic # 6 Polarization: 32.33 SS G_CDS: 4.95 Total: 37.28 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -5.55 Total: -121.03 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -1.53 Total: -49.92 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.53 -0.87 -69.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074327296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.658 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds