Wall clock time and date at job start Tue Mar 31 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99994 * 2 1 4 4 H 1.48496 * 109.47551 * 274.98676 * 3 2 1 5 5 H 1.48498 * 109.47148 * 34.99241 * 3 2 1 6 6 H 1.48502 * 109.47053 * 154.98549 * 3 2 1 7 7 C 1.38814 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00402 * 187.05644 * 7 2 1 9 9 N 1.36941 * 119.99801 * 7.05127 * 7 2 1 10 10 C 1.47028 * 125.64844 * 354.77114 * 9 7 2 11 11 C 1.54327 * 107.26850 * 178.97541 * 10 9 7 12 12 H 1.08998 * 110.72050 * 96.17074 * 11 10 9 13 13 O 1.42894 * 110.71836 * 219.44681 * 11 10 9 14 14 C 1.55158 * 102.94425 * 337.80786 * 11 10 9 15 15 H 1.09001 * 111.00365 * 277.42903 * 14 11 10 16 16 N 1.46500 * 111.03686 * 153.58892 * 14 11 10 17 17 C 1.34769 * 119.99949 * 161.33438 * 16 14 11 18 18 O 1.21289 * 120.00049 * 359.97438 * 17 16 14 19 19 C 1.50703 * 120.00264 * 180.02562 * 17 16 14 20 20 H 1.09007 * 110.43223 * 298.90958 * 19 17 16 21 21 C 1.54627 * 110.49205 * 176.22657 * 19 17 16 22 22 C 1.54473 * 101.76382 * 266.11804 * 21 19 17 23 23 N 1.46762 * 105.47426 * 334.58316 * 22 21 19 24 24 C 1.34411 * 111.30132 * 17.01554 * 23 22 21 25 25 O 1.21280 * 124.94499 * 179.62854 * 24 23 22 26 26 C 1.47427 * 125.64856 * 174.81218 * 9 7 2 27 27 H 0.96995 * 120.00030 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.88079 * 59.56053 * 10 9 7 29 29 H 1.08993 * 110.01336 * 298.46678 * 10 9 7 30 30 H 0.96700 * 114.00109 * 293.52006 * 13 11 10 31 31 H 0.97001 * 120.00033 * 341.32992 * 16 14 11 32 32 H 1.09006 * 110.96369 * 24.23652 * 21 19 17 33 33 H 1.08995 * 110.97458 * 147.99431 * 21 19 17 34 34 H 1.08997 * 110.24937 * 215.57939 * 22 21 19 35 35 H 1.09001 * 110.24684 * 93.58184 * 22 21 19 36 36 H 0.97001 * 124.34693 * 196.99475 * 23 22 21 37 37 H 1.09002 * 110.36341 * 85.25287 * 26 9 7 38 38 H 1.08995 * 110.36647 * 322.93783 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0841 -1.2058 0.1144 9 7 1.3333 -2.3835 -0.1467 10 6 -0.1283 -2.5323 -0.2028 11 6 -0.4289 -4.0332 -0.3996 12 1 -0.6371 -4.5134 0.5565 13 8 -1.5177 -4.2160 -1.3066 14 6 0.8908 -4.5747 -1.0099 15 1 0.9251 -4.3988 -2.0851 16 7 1.0650 -5.9976 -0.7077 17 6 1.9205 -6.7415 -1.4365 18 8 2.5458 -6.2331 -2.3428 19 6 2.0992 -8.2053 -1.1260 20 1 2.4760 -8.3359 -0.1114 21 6 3.0535 -8.8631 -2.1495 22 6 2.0604 -9.4183 -3.1944 23 7 0.8014 -9.6222 -2.4683 24 6 0.7936 -8.9480 -1.3055 25 8 -0.1261 -8.9371 -0.5150 26 6 1.9494 -3.7169 -0.2729 27 1 -0.4850 0.8400 0.0004 28 1 -0.5271 -1.9613 -1.0412 29 1 -0.5748 -2.1838 0.7285 30 1 -2.3662 -3.8939 -0.9727 31 1 0.5646 -6.4043 0.0170 32 1 3.7166 -8.1224 -2.5965 33 1 3.6252 -9.6684 -1.6883 34 1 2.4232 -10.3654 -3.5937 35 1 1.9187 -8.6980 -4.0001 36 1 0.0689 -10.1726 -2.7868 37 1 2.1563 -4.1340 0.7127 38 1 2.8655 -3.6575 -0.8604 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077507093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:49 Heat of formation + Delta-G solvation = -86.852922 kcal Electronic energy + Delta-G solvation = -22884.002425 eV Core-core repulsion = 19341.309985 eV Total energy + Delta-G solvation = -3542.692440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07067 -39.12650 -37.79319 -36.48498 -35.04269 -34.05451 -32.01653 -31.44144 -28.74841 -27.90494 -26.84310 -24.48893 -22.69217 -21.71137 -20.57852 -20.27401 -19.85690 -17.85564 -17.68881 -17.03089 -16.69692 -15.84289 -15.64329 -15.24370 -14.66083 -14.51750 -14.11384 -13.93348 -13.76881 -13.57581 -13.15548 -12.93995 -12.67095 -12.45440 -12.05862 -11.79982 -11.61277 -11.45193 -11.24995 -10.89652 -10.81031 -10.27003 -10.14398 -9.88741 -9.85834 -9.84232 -9.40583 -9.28756 -8.85607 -8.61155 -6.90655 -5.77031 -3.10367 2.15039 2.63344 3.07398 3.30022 3.40404 3.45636 3.47191 4.03480 4.14326 4.43658 4.54336 4.64516 4.77537 4.88786 5.18800 5.19579 5.28343 5.43499 5.58739 5.61308 5.67397 5.77243 5.83688 6.08132 6.14734 6.43891 6.50344 6.61153 6.67062 6.86663 7.31950 7.49242 7.62132 7.74640 7.92325 8.14488 8.17351 8.28582 9.15106 9.75593 10.39224 11.35180 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.031295 B = 0.004056 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.484329 B = 6902.367538 C = 7459.189061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.153 3.847 11 C 0.069 3.931 12 H 0.059 0.941 13 O -0.563 6.563 14 C 0.138 3.862 15 H 0.102 0.898 16 N -0.706 5.706 17 C 0.530 3.470 18 O -0.529 6.529 19 C -0.152 4.152 20 H 0.134 0.866 21 C -0.120 4.120 22 C 0.099 3.901 23 N -0.728 5.728 24 C 0.531 3.469 25 O -0.522 6.522 26 C 0.131 3.869 27 H 0.253 0.747 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.377 0.623 31 H 0.404 0.596 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.413 0.587 37 H 0.024 0.976 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 -19.754 -3.297 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.027 3.973 11 C 0.009 3.991 12 H 0.077 0.923 13 O -0.368 6.368 14 C 0.033 3.967 15 H 0.120 0.880 16 N -0.356 5.356 17 C 0.313 3.687 18 O -0.406 6.406 19 C -0.177 4.177 20 H 0.151 0.849 21 C -0.158 4.158 22 C -0.026 4.026 23 N -0.383 5.383 24 C 0.315 3.685 25 O -0.398 6.398 26 C 0.003 3.997 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.224 0.776 31 H 0.239 0.761 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.252 0.748 37 H 0.041 0.959 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.746 -19.319 -3.844 19.888 hybrid contribution -0.591 0.664 0.616 1.082 sum 2.155 -18.654 -3.227 19.054 Atomic orbital electron populations 1.69938 1.04996 1.25247 1.56673 1.24836 0.95741 0.97774 1.01842 0.86073 0.78679 0.83294 0.77577 1.21492 1.21738 1.20541 1.19092 0.91267 0.82237 1.43250 0.90090 1.44242 1.01186 1.01006 1.86315 1.21834 0.85488 0.88118 1.01820 1.23441 0.85873 0.98970 0.90839 0.92344 1.86457 1.19284 1.85265 1.45783 1.22299 0.94777 0.78003 1.01592 0.87969 1.45951 1.43334 1.10544 1.35766 1.19633 0.79923 0.86843 0.82271 1.90719 1.46483 1.72892 1.30459 1.22188 0.96753 0.94162 1.04563 0.84875 1.22611 0.97099 1.01103 0.94958 1.22161 0.83223 1.01732 0.95453 1.46144 1.20008 1.50784 1.21406 1.20333 0.87955 0.78792 0.81371 1.90788 1.39391 1.63201 1.46372 1.21847 0.94984 0.86278 0.96541 0.93634 0.91941 0.93446 0.77614 0.76139 0.86967 0.89260 0.89849 0.90328 0.74825 0.95860 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.36 55.49 0.57 -26.31 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 22.16 29.56 -169.99 -5.02 17.13 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.49 10.27 -15.06 -0.15 -6.64 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 9 N -0.60 -15.53 3.40 -170.07 -0.58 -16.11 16 10 C 0.15 3.70 5.16 -3.06 -0.02 3.68 16 11 C 0.07 1.33 3.95 -24.89 -0.10 1.23 16 12 H 0.06 1.02 8.00 -51.93 -0.42 0.61 16 13 O -0.56 -10.29 13.39 -35.23 -0.47 -10.77 16 14 C 0.14 2.69 3.04 -65.78 -0.20 2.49 16 15 H 0.10 2.25 7.73 -51.93 -0.40 1.85 16 16 N -0.71 -11.27 5.16 -51.73 -0.27 -11.54 16 17 C 0.53 7.97 7.19 -10.99 -0.08 7.89 16 18 O -0.53 -9.48 15.20 5.55 0.08 -9.40 16 19 C -0.15 -1.64 3.33 -91.78 -0.31 -1.94 16 20 H 0.13 1.17 8.14 -51.92 -0.42 0.75 16 21 C -0.12 -0.94 6.53 -25.10 -0.16 -1.11 16 22 C 0.10 0.70 7.78 -3.13 -0.02 0.68 16 23 N -0.73 -6.49 6.24 -59.21 -0.37 -6.86 16 24 C 0.53 6.38 7.65 -10.86 -0.08 6.29 16 25 O -0.52 -8.00 17.85 5.56 0.10 -7.90 16 26 C 0.13 2.84 6.93 -2.53 -0.02 2.82 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.06 1.69 7.21 -51.93 -0.37 1.32 16 29 H 0.05 1.23 7.61 -51.93 -0.40 0.83 16 30 H 0.38 5.30 9.12 45.56 0.42 5.72 16 31 H 0.40 5.87 8.31 -40.82 -0.34 5.53 16 32 H 0.11 1.03 6.92 -51.93 -0.36 0.67 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.41 2.96 8.96 -40.82 -0.37 2.59 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -35.08 318.61 -6.71 -41.78 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.32 Total: 10.02 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: -1.24 Total: 15.15 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.64 Total: -60.81 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.29 Total: -28.07 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.08 -6.71 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077507093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.068 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds