Wall clock time and date at job start Tue Mar 31 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99994 * 2 1 4 4 H 1.48496 * 109.47551 * 274.98676 * 3 2 1 5 5 H 1.48498 * 109.47148 * 34.99241 * 3 2 1 6 6 H 1.48502 * 109.47053 * 154.98549 * 3 2 1 7 7 C 1.38814 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00402 * 187.05644 * 7 2 1 9 9 N 1.36941 * 119.99801 * 7.05127 * 7 2 1 10 10 C 1.47028 * 125.64844 * 354.77114 * 9 7 2 11 11 C 1.54327 * 107.26850 * 178.97541 * 10 9 7 12 12 H 1.08998 * 110.72050 * 96.17074 * 11 10 9 13 13 O 1.42894 * 110.71836 * 219.44681 * 11 10 9 14 14 C 1.55158 * 102.94425 * 337.80786 * 11 10 9 15 15 H 1.09001 * 111.00365 * 277.42903 * 14 11 10 16 16 N 1.46500 * 111.03686 * 153.58892 * 14 11 10 17 17 C 1.34769 * 119.99949 * 161.33438 * 16 14 11 18 18 O 1.21289 * 120.00049 * 359.97438 * 17 16 14 19 19 C 1.50703 * 120.00264 * 180.02562 * 17 16 14 20 20 H 1.09007 * 110.43223 * 298.90958 * 19 17 16 21 21 C 1.54627 * 110.49205 * 176.22657 * 19 17 16 22 22 C 1.54473 * 101.76382 * 266.11804 * 21 19 17 23 23 N 1.46762 * 105.47426 * 334.58316 * 22 21 19 24 24 C 1.34411 * 111.30132 * 17.01554 * 23 22 21 25 25 O 1.21280 * 124.94499 * 179.62854 * 24 23 22 26 26 C 1.47427 * 125.64856 * 174.81218 * 9 7 2 27 27 H 0.96995 * 120.00030 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.88079 * 59.56053 * 10 9 7 29 29 H 1.08993 * 110.01336 * 298.46678 * 10 9 7 30 30 H 0.96700 * 114.00109 * 293.52006 * 13 11 10 31 31 H 0.97001 * 120.00033 * 341.32992 * 16 14 11 32 32 H 1.09006 * 110.96369 * 24.23652 * 21 19 17 33 33 H 1.08995 * 110.97458 * 147.99431 * 21 19 17 34 34 H 1.08997 * 110.24937 * 215.57939 * 22 21 19 35 35 H 1.09001 * 110.24684 * 93.58184 * 22 21 19 36 36 H 0.97001 * 124.34693 * 196.99475 * 23 22 21 37 37 H 1.09002 * 110.36341 * 85.25287 * 26 9 7 38 38 H 1.08995 * 110.36647 * 322.93783 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0841 -1.2058 0.1144 9 7 1.3333 -2.3835 -0.1467 10 6 -0.1283 -2.5323 -0.2028 11 6 -0.4289 -4.0332 -0.3996 12 1 -0.6371 -4.5134 0.5565 13 8 -1.5177 -4.2160 -1.3066 14 6 0.8908 -4.5747 -1.0099 15 1 0.9251 -4.3988 -2.0851 16 7 1.0650 -5.9976 -0.7077 17 6 1.9205 -6.7415 -1.4365 18 8 2.5458 -6.2331 -2.3428 19 6 2.0992 -8.2053 -1.1260 20 1 2.4760 -8.3359 -0.1114 21 6 3.0535 -8.8631 -2.1495 22 6 2.0604 -9.4183 -3.1944 23 7 0.8014 -9.6222 -2.4683 24 6 0.7936 -8.9480 -1.3055 25 8 -0.1261 -8.9371 -0.5150 26 6 1.9494 -3.7169 -0.2729 27 1 -0.4850 0.8400 0.0004 28 1 -0.5271 -1.9613 -1.0412 29 1 -0.5748 -2.1838 0.7285 30 1 -2.3662 -3.8939 -0.9727 31 1 0.5646 -6.4043 0.0170 32 1 3.7166 -8.1224 -2.5965 33 1 3.6252 -9.6684 -1.6883 34 1 2.4232 -10.3654 -3.5937 35 1 1.9187 -8.6980 -4.0001 36 1 0.0689 -10.1726 -2.7868 37 1 2.1563 -4.1340 0.7127 38 1 2.8655 -3.6575 -0.8604 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077507093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:49 Heat of formation + Delta-G solvation = -118.358264 kcal Electronic energy + Delta-G solvation = -22885.368599 eV Core-core repulsion = 19341.309985 eV Total energy + Delta-G solvation = -3544.058615 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.04845 -40.44982 -39.27662 -37.38673 -36.71843 -35.59589 -33.71412 -32.53026 -30.33324 -29.19865 -28.34184 -26.36953 -23.74622 -22.58936 -22.32064 -21.84917 -21.01623 -19.19608 -18.77401 -18.47997 -18.22006 -17.38341 -16.72533 -16.59287 -16.21617 -15.85900 -15.48565 -15.29327 -14.72179 -14.68760 -14.51981 -14.48558 -14.21003 -13.77892 -13.66171 -13.18989 -13.17944 -12.79587 -12.75240 -12.41952 -12.27439 -12.08417 -11.90544 -11.59167 -11.32962 -11.06100 -10.86707 -10.77148 -10.25029 -10.12767 -8.98950 -7.91213 -5.27524 1.14979 1.45341 1.48380 1.52039 1.56995 2.02870 2.39250 2.47173 3.08054 3.23216 3.29427 3.40887 3.49911 3.62218 3.86009 4.00107 4.02340 4.15267 4.24619 4.40249 4.49943 4.53354 4.76885 4.80142 4.93552 5.05705 5.14836 5.32104 5.36561 5.44339 5.63243 5.71607 5.91917 6.11166 6.38236 6.80273 7.01929 7.05305 7.12776 7.67228 8.30472 9.19390 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.031295 B = 0.004056 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.484329 B = 6902.367538 C = 7459.189061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.980 3.020 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.250 4.250 8 H 0.084 0.916 9 N -0.621 5.621 10 C 0.162 3.838 11 C 0.088 3.912 12 H 0.088 0.912 13 O -0.569 6.569 14 C 0.154 3.846 15 H 0.074 0.926 16 N -0.701 5.701 17 C 0.526 3.474 18 O -0.560 6.560 19 C -0.146 4.146 20 H 0.158 0.842 21 C -0.115 4.115 22 C 0.096 3.904 23 N -0.716 5.716 24 C 0.525 3.475 25 O -0.561 6.561 26 C 0.133 3.867 27 H 0.250 0.750 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.396 0.604 31 H 0.414 0.586 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.066 0.934 36 H 0.422 0.578 37 H 0.041 0.959 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 -21.813 -3.229 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.808 3.192 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.379 4.379 8 H 0.102 0.898 9 N -0.349 5.349 10 C 0.037 3.963 11 C 0.028 3.972 12 H 0.106 0.894 13 O -0.377 6.377 14 C 0.047 3.953 15 H 0.092 0.908 16 N -0.352 5.352 17 C 0.312 3.688 18 O -0.439 6.439 19 C -0.170 4.170 20 H 0.175 0.825 21 C -0.152 4.152 22 C -0.027 4.027 23 N -0.371 5.371 24 C 0.309 3.691 25 O -0.440 6.440 26 C 0.007 3.993 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.246 0.754 31 H 0.250 0.750 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.085 0.915 36 H 0.262 0.738 37 H 0.059 0.941 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.754 -21.439 -3.796 22.094 hybrid contribution -0.892 1.260 0.532 1.633 sum 2.861 -20.179 -3.264 20.640 Atomic orbital electron populations 1.70138 1.06305 1.25618 1.57489 1.25682 0.96671 1.01031 1.01903 0.85036 0.77956 0.78916 0.77278 1.21542 1.21731 1.19081 1.19469 0.91777 0.83531 1.43097 0.89799 1.44511 1.02129 1.01989 1.86289 1.21604 0.84611 0.91134 0.98995 1.23156 0.86284 0.95528 0.92229 0.89450 1.86422 1.20117 1.85107 1.46044 1.21783 0.94057 0.79988 0.99473 0.90815 1.45830 1.43987 1.08966 1.36456 1.20386 0.78632 0.88511 0.81230 1.90710 1.47465 1.74039 1.31661 1.22238 0.97264 0.90576 1.06934 0.82494 1.22708 0.96661 1.01558 0.94308 1.22354 0.82205 1.03463 0.94726 1.46192 1.20892 1.49620 1.20373 1.20524 0.87748 0.79019 0.81793 1.90768 1.40633 1.64750 1.47852 1.21919 0.95033 0.85059 0.97333 0.94107 0.95747 0.95778 0.75387 0.74957 0.88222 0.85701 0.85932 0.91533 0.73803 0.94142 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.78 10.36 21.65 0.22 -56.55 16 2 C -0.06 -3.40 5.48 84.86 0.46 -2.94 16 3 Si 0.98 46.03 29.56 68.60 2.03 48.06 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.25 -14.32 10.27 84.03 0.86 -13.45 16 8 H 0.08 4.60 7.84 -2.91 -0.02 4.58 16 9 N -0.62 -32.84 3.40 -691.98 -2.35 -35.19 16 10 C 0.16 8.07 5.16 86.73 0.45 8.52 16 11 C 0.09 3.38 3.95 31.78 0.13 3.51 16 12 H 0.09 2.89 8.00 -2.39 -0.02 2.87 16 13 O -0.57 -20.47 13.39 -148.98 -1.99 -22.46 16 14 C 0.15 5.97 3.04 46.38 0.14 6.11 16 15 H 0.07 3.32 7.73 -2.39 -0.02 3.30 16 16 N -0.70 -21.65 5.16 -435.96 -2.25 -23.90 16 17 C 0.53 15.23 7.19 87.66 0.63 15.86 16 18 O -0.56 -19.89 15.20 -3.06 -0.05 -19.94 16 19 C -0.15 -2.79 3.33 -11.55 -0.04 -2.83 16 20 H 0.16 2.25 8.14 -2.38 -0.02 2.23 16 21 C -0.11 -1.45 6.53 31.65 0.21 -1.24 16 22 C 0.10 1.07 7.78 86.83 0.68 1.75 16 23 N -0.72 -10.92 6.24 -459.83 -2.87 -13.79 16 24 C 0.52 11.49 7.65 87.90 0.67 12.16 16 25 O -0.56 -16.39 17.85 -3.03 -0.05 -16.45 16 26 C 0.13 5.80 6.93 86.85 0.60 6.40 16 27 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.02 1.38 7.21 -2.39 -0.02 1.36 16 29 H 0.02 1.29 7.61 -2.39 -0.02 1.27 16 30 H 0.40 10.78 9.12 -74.06 -0.68 10.11 16 31 H 0.41 11.32 8.31 -92.71 -0.77 10.55 16 32 H 0.10 1.61 6.92 -2.38 -0.02 1.59 16 33 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.42 5.02 8.96 -92.71 -0.83 4.19 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -78.06 318.61 -3.68 -81.74 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -1.16 Total: 24.65 kcal Atomic # 6 Polarization: 29.05 SS G_CDS: 4.79 Total: 33.84 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -7.24 Total: -129.44 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -2.09 Total: -58.85 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -78.06 -3.68 -81.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077507093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.623 kcal (2) G-P(sol) polarization free energy of solvation -78.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds