Wall clock time and date at job start Tue Mar 31 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.91437 * 2 1 4 4 C 1.54917 * 111.00301 * 236.09885 * 2 1 3 5 5 N 1.47422 * 104.83074 * 204.91369 * 4 2 1 6 6 C 1.34776 * 125.64527 * 204.09182 * 5 4 2 7 7 O 1.21279 * 120.00145 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99758 * 180.02562 * 6 5 4 9 9 H 1.08995 * 110.50364 * 319.30133 * 8 6 5 10 10 C 1.54086 * 110.56249 * 82.04546 * 8 6 5 11 11 O 1.45698 * 104.00995 * 118.57523 * 10 8 6 12 12 C 1.33766 * 109.47621 * 359.97438 * 11 10 8 13 13 O 1.21512 * 123.06884 * 180.02562 * 12 11 10 14 14 N 1.34321 * 113.90356 * 0.08830 * 12 11 10 15 15 C 1.47020 * 108.70191 * 24.12901 * 5 4 2 16 16 C 1.54316 * 107.27568 * 358.94070 * 15 5 4 17 17 H 1.09003 * 110.72351 * 96.16743 * 16 15 5 18 18 N 1.46500 * 110.72232 * 219.44595 * 16 15 5 19 19 C 1.36941 * 119.99671 * 268.51983 * 18 16 15 20 20 H 1.08001 * 120.00333 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99811 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99772 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99931 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47395 * 89.99778 * 23 21 19 25 25 H 1.48504 * 109.46863 * 209.99552 * 23 21 19 26 26 H 1.48498 * 109.47418 * 329.99439 * 23 21 19 27 27 H 1.09004 * 109.47256 * 182.44591 * 1 2 3 28 28 H 1.08998 * 109.47483 * 302.44603 * 1 2 3 29 29 H 1.08999 * 109.47641 * 62.44790 * 1 2 3 30 30 H 1.08998 * 110.36726 * 323.75382 * 4 2 1 31 31 H 1.09005 * 110.36534 * 86.07904 * 4 2 1 32 32 H 1.09003 * 110.51778 * 237.20200 * 10 8 6 33 33 H 1.09003 * 110.52380 * 359.79555 * 10 8 6 34 34 H 0.96999 * 125.73438 * 179.97438 * 14 12 11 35 35 H 1.09000 * 109.88493 * 239.51822 * 15 5 4 36 36 H 1.09005 * 110.00581 * 118.43132 * 15 5 4 37 37 H 0.97001 * 120.00302 * 88.51904 * 18 16 15 38 38 H 0.96999 * 119.99377 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2004 5 7 3.4271 -1.2430 -0.7734 6 6 4.4475 -1.5615 -1.5942 7 8 4.3007 -1.4998 -2.7965 8 6 5.7710 -1.9944 -1.0179 9 1 6.0260 -1.3875 -0.1492 10 6 5.7354 -3.4885 -0.6429 11 8 6.7663 -4.0871 -1.4806 12 6 7.3342 -3.1394 -2.2347 13 8 8.2267 -3.3687 -3.0267 14 7 6.8293 -1.9106 -2.0361 15 6 3.4674 -1.2741 0.6959 16 6 2.0862 -0.8080 1.2022 17 1 1.4468 -1.6632 1.4209 18 7 2.2287 0.0496 2.3814 19 6 2.2000 -0.5003 3.6353 20 1 2.0720 -1.5660 3.7548 21 6 2.3356 0.3121 4.7526 22 7 2.3075 -0.2163 5.9578 23 14 2.5563 2.1555 4.5459 24 1 1.2260 2.8152 4.5350 25 1 3.3632 2.6869 5.6737 26 1 3.2553 2.4297 3.2647 27 1 -0.3634 -1.0268 0.0439 28 1 -0.3634 0.5513 0.8672 29 1 -0.3634 0.4753 -0.9111 30 1 1.4518 -1.6704 -1.4025 31 1 2.1559 -0.1719 -2.0838 32 1 5.9743 -3.6234 0.4120 33 1 4.7590 -3.9163 -0.8702 34 1 7.1134 -1.1014 -2.4892 35 1 4.2425 -0.5997 1.0598 36 1 3.6662 -2.2884 1.0421 37 1 2.3433 1.0068 2.2741 38 1 2.4026 0.3514 6.7385 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082496533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:58 Heat of formation + Delta-G solvation = -81.851020 kcal Electronic energy + Delta-G solvation = -22776.164492 eV Core-core repulsion = 19233.688950 eV Total energy + Delta-G solvation = -3542.475542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.98983 -39.98087 -37.97761 -37.26573 -34.87998 -34.43692 -32.84998 -31.24555 -30.11138 -28.16621 -26.72584 -24.65793 -23.79559 -22.60951 -21.60686 -20.41746 -19.76836 -18.39110 -17.94570 -17.71605 -17.03554 -16.48063 -16.26412 -15.22567 -15.02705 -14.69510 -14.47715 -14.44889 -13.97750 -13.60024 -13.55167 -13.37479 -12.94120 -12.71856 -12.60366 -12.40159 -11.89525 -11.62603 -11.32817 -11.11469 -10.98064 -10.90772 -10.82957 -10.58453 -10.46783 -10.20083 -9.79792 -9.50925 -9.18224 -8.73631 -7.57139 -5.98759 -3.38119 2.17282 2.29012 2.51081 2.78060 3.20636 3.24163 3.30884 3.32516 3.78237 4.03897 4.38837 4.39734 4.60293 4.76402 4.82677 4.84503 4.98114 5.09517 5.24390 5.37387 5.44428 5.50557 5.59220 5.65492 5.85910 5.92568 6.02863 6.15542 6.17665 6.33016 6.49211 6.53629 6.95416 7.33083 7.73357 7.80244 7.90037 8.19460 8.95096 9.67395 9.84329 11.18493 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.004508 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.873124 B = 6209.700676 C = 7013.137638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.082 0.918 4 C 0.114 3.886 5 N -0.607 5.607 6 C 0.516 3.484 7 O -0.532 6.532 8 C 0.079 3.921 9 H 0.129 0.871 10 C 0.057 3.943 11 O -0.322 6.322 12 C 0.652 3.348 13 O -0.521 6.521 14 N -0.711 5.711 15 C 0.063 3.937 16 C 0.183 3.817 17 H 0.081 0.919 18 N -0.734 5.734 19 C -0.259 4.259 20 H 0.093 0.907 21 C 0.014 3.986 22 N -0.926 5.926 23 Si 0.882 3.118 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.277 1.277 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.440 0.560 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.365 0.635 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -1.242 -11.574 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 H 0.100 0.900 4 C -0.009 4.009 5 N -0.340 5.340 6 C 0.301 3.699 7 O -0.409 6.409 8 C -0.032 4.032 9 H 0.147 0.853 10 C -0.019 4.019 11 O -0.232 6.232 12 C 0.405 3.595 13 O -0.405 6.405 14 N -0.383 5.383 15 C -0.062 4.062 16 C 0.071 3.929 17 H 0.099 0.901 18 N -0.375 5.375 19 C -0.388 4.388 20 H 0.111 0.889 21 C -0.183 4.183 22 N -0.572 5.572 23 Si 0.712 3.288 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.204 1.204 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.142 0.858 33 H 0.129 0.871 34 H 0.283 0.717 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.198 0.802 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.809 -1.918 -12.326 12.605 hybrid contribution 0.195 1.942 0.050 1.953 sum 2.004 0.025 -12.276 12.439 Atomic orbital electron populations 1.21615 0.93433 1.02299 1.01888 1.22712 0.96766 0.99663 0.94698 0.89991 1.22327 0.82191 0.98483 0.97868 1.48540 1.12100 1.65158 1.08240 1.20139 0.84665 0.78546 0.86557 1.90750 1.82582 1.53286 1.14239 1.22288 0.87940 0.99512 0.93423 0.85314 1.24253 0.92452 0.88326 0.96862 1.87291 1.49859 1.33548 1.52487 1.18488 0.81276 0.79773 0.79989 1.91079 1.30519 1.82502 1.36429 1.45724 1.37664 1.10524 1.44424 1.23468 1.03720 1.02019 0.77032 1.21213 0.91602 0.93989 0.86058 0.90135 1.42719 1.87863 1.05088 1.01854 1.19050 1.43891 0.94700 0.81171 0.88889 1.24680 1.01166 0.97438 0.95066 1.69693 1.55734 1.34688 0.97066 0.86608 0.78053 0.87033 0.77070 1.20865 1.21585 1.20352 0.92354 0.91408 0.92999 0.91021 0.90657 0.85759 0.87149 0.71654 0.90528 0.91280 0.80194 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.29 37.15 0.35 -1.15 16 2 C -0.12 -1.44 3.27 -88.47 -0.29 -1.73 16 3 H 0.08 1.04 8.01 -51.93 -0.42 0.63 16 4 C 0.11 1.30 6.38 -2.53 -0.02 1.29 16 5 N -0.61 -7.14 3.33 -170.52 -0.57 -7.71 16 6 C 0.52 6.37 6.96 -10.98 -0.08 6.29 16 7 O -0.53 -8.44 16.83 5.56 0.09 -8.34 16 8 C 0.08 0.76 3.54 -68.19 -0.24 0.52 16 9 H 0.13 0.98 7.56 -51.93 -0.39 0.59 16 10 C 0.06 0.50 7.87 37.72 0.30 0.80 16 11 O -0.32 -4.08 11.09 -37.82 -0.42 -4.50 16 12 C 0.65 9.18 9.16 53.85 0.49 9.68 16 13 O -0.52 -9.18 18.04 -19.12 -0.34 -9.52 16 14 N -0.71 -7.93 5.66 -59.28 -0.34 -8.26 16 15 C 0.06 0.78 6.06 -3.07 -0.02 0.76 16 16 C 0.18 2.69 3.08 -66.10 -0.20 2.49 16 17 H 0.08 1.22 7.96 -51.93 -0.41 0.80 16 18 N -0.73 -14.17 4.95 -51.65 -0.26 -14.43 16 19 C -0.26 -6.25 10.44 -15.06 -0.16 -6.41 16 20 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 21 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 22 N -0.93 -26.54 13.97 55.49 0.78 -25.76 16 23 Si 0.88 19.83 27.74 -169.99 -4.71 15.11 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -5.78 6.52 56.52 0.37 -5.41 16 27 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.76 8.04 -51.93 -0.42 0.35 16 31 H 0.07 0.88 8.04 -51.93 -0.42 0.47 16 32 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.11 0.90 7.72 -51.93 -0.40 0.50 16 34 H 0.44 4.28 8.96 -40.82 -0.37 3.92 16 35 H 0.08 0.99 7.77 -51.93 -0.40 0.59 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.36 7.08 5.62 -40.82 -0.23 6.85 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -32.53 320.64 -6.06 -38.59 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.16 Total: 7.19 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 0.04 Total: 12.80 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.38 Total: -56.16 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.67 Total: -22.36 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.11 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.53 -6.06 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082496533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.258 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds