Wall clock time and date at job start Tue Mar 31 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.91437 * 2 1 4 4 C 1.54917 * 111.00301 * 236.09885 * 2 1 3 5 5 N 1.47422 * 104.83074 * 204.91369 * 4 2 1 6 6 C 1.34776 * 125.64527 * 204.09182 * 5 4 2 7 7 O 1.21279 * 120.00145 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99758 * 180.02562 * 6 5 4 9 9 H 1.08995 * 110.50364 * 319.30133 * 8 6 5 10 10 C 1.54086 * 110.56249 * 82.04546 * 8 6 5 11 11 O 1.45698 * 104.00995 * 118.57523 * 10 8 6 12 12 C 1.33766 * 109.47621 * 359.97438 * 11 10 8 13 13 O 1.21512 * 123.06884 * 180.02562 * 12 11 10 14 14 N 1.34321 * 113.90356 * 0.08830 * 12 11 10 15 15 C 1.47020 * 108.70191 * 24.12901 * 5 4 2 16 16 C 1.54316 * 107.27568 * 358.94070 * 15 5 4 17 17 H 1.09003 * 110.72351 * 96.16743 * 16 15 5 18 18 N 1.46500 * 110.72232 * 219.44595 * 16 15 5 19 19 C 1.36941 * 119.99671 * 268.51983 * 18 16 15 20 20 H 1.08001 * 120.00333 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99811 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99772 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99931 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47395 * 89.99778 * 23 21 19 25 25 H 1.48504 * 109.46863 * 209.99552 * 23 21 19 26 26 H 1.48498 * 109.47418 * 329.99439 * 23 21 19 27 27 H 1.09004 * 109.47256 * 182.44591 * 1 2 3 28 28 H 1.08998 * 109.47483 * 302.44603 * 1 2 3 29 29 H 1.08999 * 109.47641 * 62.44790 * 1 2 3 30 30 H 1.08998 * 110.36726 * 323.75382 * 4 2 1 31 31 H 1.09005 * 110.36534 * 86.07904 * 4 2 1 32 32 H 1.09003 * 110.51778 * 237.20200 * 10 8 6 33 33 H 1.09003 * 110.52380 * 359.79555 * 10 8 6 34 34 H 0.96999 * 125.73438 * 179.97438 * 14 12 11 35 35 H 1.09000 * 109.88493 * 239.51822 * 15 5 4 36 36 H 1.09005 * 110.00581 * 118.43132 * 15 5 4 37 37 H 0.97001 * 120.00302 * 88.51904 * 18 16 15 38 38 H 0.96999 * 119.99377 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2004 5 7 3.4271 -1.2430 -0.7734 6 6 4.4475 -1.5615 -1.5942 7 8 4.3007 -1.4998 -2.7965 8 6 5.7710 -1.9944 -1.0179 9 1 6.0260 -1.3875 -0.1492 10 6 5.7354 -3.4885 -0.6429 11 8 6.7663 -4.0871 -1.4806 12 6 7.3342 -3.1394 -2.2347 13 8 8.2267 -3.3687 -3.0267 14 7 6.8293 -1.9106 -2.0361 15 6 3.4674 -1.2741 0.6959 16 6 2.0862 -0.8080 1.2022 17 1 1.4468 -1.6632 1.4209 18 7 2.2287 0.0496 2.3814 19 6 2.2000 -0.5003 3.6353 20 1 2.0720 -1.5660 3.7548 21 6 2.3356 0.3121 4.7526 22 7 2.3075 -0.2163 5.9578 23 14 2.5563 2.1555 4.5459 24 1 1.2260 2.8152 4.5350 25 1 3.3632 2.6869 5.6737 26 1 3.2553 2.4297 3.2647 27 1 -0.3634 -1.0268 0.0439 28 1 -0.3634 0.5513 0.8672 29 1 -0.3634 0.4753 -0.9111 30 1 1.4518 -1.6704 -1.4025 31 1 2.1559 -0.1719 -2.0838 32 1 5.9743 -3.6234 0.4120 33 1 4.7590 -3.9163 -0.8702 34 1 7.1134 -1.1014 -2.4892 35 1 4.2425 -0.5997 1.0598 36 1 3.6662 -2.2884 1.0421 37 1 2.3433 1.0068 2.2741 38 1 2.4026 0.3514 6.7385 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082496533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:57 Heat of formation + Delta-G solvation = -107.805436 kcal Electronic energy + Delta-G solvation = -22777.289960 eV Core-core repulsion = 19233.688950 eV Total energy + Delta-G solvation = -3543.601010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.93390 -41.02020 -39.10096 -38.37005 -35.97269 -35.80393 -34.06554 -32.87596 -30.98511 -29.44990 -27.62550 -25.79205 -25.11452 -23.59718 -22.85969 -21.59511 -20.74286 -19.51101 -19.28385 -18.85979 -18.02757 -17.51012 -17.36607 -16.51824 -16.19208 -15.89048 -15.71617 -15.34482 -15.10739 -14.81807 -14.65121 -14.52513 -14.25115 -13.84610 -13.66560 -13.36473 -13.15470 -12.92667 -12.87226 -12.25604 -12.10683 -12.09165 -11.99068 -11.89420 -11.75631 -11.58284 -11.36978 -10.95572 -10.43226 -9.73971 -9.31309 -7.96527 -5.31053 1.20997 1.32533 1.43603 1.46061 1.53380 1.54472 1.82420 2.47331 2.53484 2.99386 3.10002 3.34333 3.55574 3.69082 3.70830 3.85174 3.96184 4.15631 4.32401 4.37622 4.39685 4.46283 4.63306 4.69793 4.89343 4.95310 5.08007 5.15170 5.18174 5.33760 5.50284 5.59612 5.84898 6.00112 6.26789 6.35118 6.80258 6.91939 7.12985 7.87581 8.04361 9.24140 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.004508 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.873124 B = 6209.700676 C = 7013.137638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 H 0.081 0.919 4 C 0.115 3.885 5 N -0.601 5.601 6 C 0.518 3.482 7 O -0.569 6.569 8 C 0.082 3.918 9 H 0.160 0.840 10 C 0.053 3.947 11 O -0.334 6.334 12 C 0.650 3.350 13 O -0.567 6.567 14 N -0.701 5.701 15 C 0.072 3.928 16 C 0.172 3.828 17 H 0.076 0.924 18 N -0.737 5.737 19 C -0.224 4.224 20 H 0.069 0.931 21 C -0.056 4.056 22 N -0.981 5.981 23 Si 0.943 3.057 24 H -0.285 1.285 25 H -0.305 1.305 26 H -0.248 1.248 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.119 0.881 34 H 0.445 0.555 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.367 0.633 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 -0.630 -12.636 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 H 0.099 0.901 4 C -0.007 4.007 5 N -0.333 5.333 6 C 0.305 3.695 7 O -0.448 6.448 8 C -0.027 4.027 9 H 0.177 0.823 10 C -0.021 4.021 11 O -0.244 6.244 12 C 0.403 3.597 13 O -0.454 6.454 14 N -0.373 5.373 15 C -0.053 4.053 16 C 0.063 3.937 17 H 0.094 0.906 18 N -0.379 5.379 19 C -0.355 4.355 20 H 0.087 0.913 21 C -0.248 4.248 22 N -0.631 5.631 23 Si 0.772 3.228 24 H -0.211 1.211 25 H -0.232 1.232 26 H -0.172 1.172 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.177 0.823 33 H 0.137 0.863 34 H 0.290 0.710 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.200 0.800 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.635 -1.296 -13.443 13.604 hybrid contribution 0.122 1.669 0.322 1.704 sum 1.757 0.373 -13.121 13.243 Atomic orbital electron populations 1.21604 0.92631 1.02684 1.02134 1.22618 0.97400 0.99247 0.93504 0.90099 1.22353 0.82159 0.98846 0.97358 1.48491 1.12239 1.64725 1.07892 1.20487 0.85275 0.77746 0.85982 1.90748 1.83235 1.54972 1.15850 1.22492 0.86024 1.00701 0.93500 0.82285 1.24657 0.92109 0.87292 0.98085 1.87264 1.50582 1.33791 1.52742 1.18604 0.80958 0.80462 0.79652 1.91036 1.32648 1.83333 1.38432 1.45704 1.37362 1.09852 1.44345 1.23195 1.01776 1.03125 0.77173 1.21427 0.93142 0.93749 0.85416 0.90567 1.42670 1.88060 1.05678 1.01498 1.19032 1.39987 0.93561 0.82940 0.91317 1.25365 1.02861 1.01700 0.94853 1.69862 1.59227 1.36085 0.97968 0.85600 0.77733 0.81890 0.77611 1.21126 1.23226 1.17224 0.91775 0.93096 0.91010 0.89878 0.90600 0.82292 0.86286 0.71009 0.90359 0.89342 0.79964 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.29 71.98 0.67 -1.93 16 2 C -0.11 -2.30 3.27 -9.40 -0.03 -2.33 16 3 H 0.08 1.79 8.01 -2.39 -0.02 1.77 16 4 C 0.12 2.27 6.38 86.86 0.55 2.82 16 5 N -0.60 -12.09 3.33 -811.79 -2.70 -14.79 16 6 C 0.52 11.27 6.96 87.66 0.61 11.88 16 7 O -0.57 -16.88 16.83 -3.03 -0.05 -16.93 16 8 C 0.08 1.33 3.54 44.50 0.16 1.49 16 9 H 0.16 1.69 7.56 -2.39 -0.02 1.68 16 10 C 0.05 0.76 7.87 72.35 0.57 1.33 16 11 O -0.33 -7.86 11.09 -47.26 -0.52 -8.39 16 12 C 0.65 17.63 9.16 129.86 1.19 18.82 16 13 O -0.57 -20.03 18.04 19.65 0.35 -19.67 16 14 N -0.70 -14.28 5.66 -572.82 -3.24 -17.53 16 15 C 0.07 1.52 6.06 86.73 0.53 2.05 16 16 C 0.17 4.58 3.08 46.18 0.14 4.73 16 17 H 0.08 2.13 7.96 -2.39 -0.02 2.11 16 18 N -0.74 -26.75 4.95 -317.33 -1.57 -28.32 16 19 C -0.22 -10.63 10.44 84.03 0.88 -9.75 16 20 H 0.07 3.56 8.06 -2.91 -0.02 3.53 16 21 C -0.06 -2.91 5.50 84.86 0.47 -2.44 16 22 N -0.98 -57.35 13.97 21.65 0.30 -57.05 16 23 Si 0.94 40.39 27.74 68.60 1.90 42.30 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 26 H -0.25 -9.24 6.52 99.48 0.65 -8.59 16 27 H 0.06 1.18 8.11 -2.39 -0.02 1.16 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.49 8.04 -2.39 -0.02 1.47 16 31 H 0.08 1.55 8.04 -2.38 -0.02 1.53 16 32 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.12 1.53 7.72 -2.39 -0.02 1.51 16 34 H 0.45 7.97 8.96 -92.71 -0.83 7.14 16 35 H 0.08 1.70 7.77 -2.39 -0.02 1.68 16 36 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.37 13.13 5.62 -92.71 -0.52 12.61 16 38 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -71.81 320.64 -0.11 -71.92 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -0.31 Total: 21.80 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: 5.73 Total: 26.66 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -7.21 Total: -117.69 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.22 Total: -44.99 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.90 Total: 42.30 kcal Total: -71.81 -0.11 -71.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082496533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.884 kcal (2) G-P(sol) polarization free energy of solvation -71.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds