Wall clock time and date at job start Tue Mar 31 2020 02:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47042 * 299.99972 * 3 2 1 6 6 H 1.48498 * 109.47451 * 60.00044 * 3 2 1 7 7 C 1.38808 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00063 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64873 * 180.02562 * 9 7 2 11 11 C 1.54911 * 104.83313 * 204.09164 * 10 9 7 12 12 H 1.08997 * 111.00557 * 81.05964 * 11 10 9 13 13 N 1.46498 * 111.00387 * 204.91768 * 11 10 9 14 14 C 1.34783 * 119.99691 * 267.19520 * 13 11 10 15 15 O 1.21280 * 119.99776 * 359.97438 * 14 13 11 16 16 C 1.50699 * 119.99902 * 180.02562 * 14 13 11 17 17 H 1.09000 * 115.55196 * 61.87361 * 16 14 13 18 18 C 1.52995 * 117.49726 * 207.54598 * 16 14 13 19 19 C 1.52998 * 117.49434 * 276.20475 * 16 14 13 20 20 H 1.09009 * 117.49712 * 144.99844 * 19 16 14 21 21 C 1.50698 * 117.50394 * 359.97438 * 19 16 14 22 22 N 1.34779 * 120.00006 * 138.33998 * 21 19 16 23 23 O 1.21277 * 119.99888 * 318.35165 * 21 19 16 24 24 C 1.55156 * 101.58022 * 322.98912 * 11 10 9 25 25 H 1.08994 * 110.87414 * 153.93538 * 24 11 10 26 26 O 1.42906 * 110.72226 * 277.14299 * 24 11 10 27 27 C 1.47015 * 125.65097 * 359.96906 * 9 7 2 28 28 H 0.97005 * 119.99708 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.36437 * 322.92884 * 10 9 7 30 30 H 1.09000 * 110.36941 * 85.25045 * 10 9 7 31 31 H 0.96996 * 120.00241 * 87.19214 * 13 11 10 32 32 H 1.08999 * 117.49809 * 214.97778 * 18 16 14 33 33 H 1.09001 * 117.50146 * 359.97438 * 18 16 14 34 34 H 0.96996 * 119.99950 * 0.02562 * 22 21 19 35 35 H 0.97002 * 119.99756 * 179.97438 * 22 21 19 36 36 H 0.96692 * 114.00159 * 174.97637 * 26 24 11 37 37 H 1.09000 * 109.88191 * 59.55998 * 27 9 7 38 38 H 1.09001 * 110.01521 * 298.47352 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 1.9333 -3.7312 0.0016 11 6 0.8519 -4.6564 -0.6101 12 1 0.8570 -4.5970 -1.6984 13 7 1.0290 -6.0395 -0.1609 14 6 1.7593 -6.8993 -0.8985 15 8 2.2695 -6.5279 -1.9342 16 6 1.9411 -8.3222 -0.4367 17 1 1.0268 -8.9098 -0.3531 18 6 3.2115 -9.0514 -0.8784 19 6 3.0541 -8.5996 0.5757 20 1 2.8721 -9.3698 1.3254 21 6 3.8852 -7.4292 1.0343 22 7 4.2240 -7.3112 2.3335 23 8 4.2491 -6.5934 0.2344 24 6 -0.4485 -4.0441 -0.0258 25 1 -1.3004 -4.2513 -0.6734 26 8 -0.6889 -4.5338 1.2950 27 6 -0.1375 -2.5328 0.0006 28 1 -0.4850 0.8401 0.0004 29 1 2.8330 -3.7408 -0.6137 30 1 2.1661 -4.0415 1.0203 31 1 0.6207 -6.3365 0.6673 32 1 3.1331 -10.1188 -1.0850 33 1 3.9157 -8.5021 -1.5033 34 1 3.9331 -7.9798 2.9732 35 1 4.7592 -6.5580 2.6287 36 1 -1.4468 -4.1244 1.7344 37 1 -0.5576 -2.0524 -0.8830 38 1 -0.5568 -2.0836 0.9010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083784276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:16 Heat of formation + Delta-G solvation = -63.244533 kcal Electronic energy + Delta-G solvation = -23171.341253 eV Core-core repulsion = 19629.672549 eV Total energy + Delta-G solvation = -3541.668704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.44402 -38.96679 -37.80233 -35.81252 -34.76167 -33.78742 -33.64292 -31.55705 -28.50107 -27.14490 -25.22994 -24.54109 -23.47037 -20.66577 -20.40050 -20.01460 -19.58303 -18.01278 -17.20683 -17.11531 -16.65418 -15.87310 -15.37208 -15.14814 -14.73806 -14.49187 -14.18220 -14.03194 -13.64222 -13.24316 -13.01102 -12.66559 -12.47880 -12.12980 -12.03661 -11.20523 -10.91437 -10.91147 -10.78453 -10.77459 -10.43455 -10.32502 -10.04166 -10.00559 -9.75785 -9.69851 -9.50583 -9.26141 -8.62592 -8.49434 -6.80431 -5.69593 -3.01636 2.27248 3.01770 3.23726 3.42856 3.44680 3.49151 3.52183 3.82213 4.45908 4.54094 4.59515 4.61003 4.77550 4.86136 5.14719 5.38847 5.44139 5.46063 5.52436 5.62715 5.80874 5.95047 5.97354 6.18496 6.31871 6.73364 6.76177 6.85345 7.07555 7.25800 7.38468 7.49750 7.78737 7.95956 8.12033 8.25404 8.26419 8.64453 9.24244 9.84303 10.49440 11.42993 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.004782 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.889531 B = 5854.339873 C = 6339.697825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.011 4.011 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.138 3.862 11 C 0.142 3.858 12 H 0.103 0.897 13 N -0.704 5.704 14 C 0.541 3.459 15 O -0.526 6.526 16 C -0.154 4.154 17 H 0.136 0.864 18 C -0.115 4.115 19 C -0.179 4.179 20 H 0.127 0.873 21 C 0.534 3.466 22 N -0.853 5.853 23 O -0.513 6.513 24 C 0.067 3.933 25 H 0.060 0.940 26 O -0.569 6.569 27 C 0.154 3.846 28 H 0.251 0.749 29 H 0.045 0.955 30 H 0.022 0.978 31 H 0.404 0.596 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.399 0.601 35 H 0.404 0.596 36 H 0.379 0.621 37 H 0.055 0.945 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -20.366 5.514 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.011 3.989 11 C 0.036 3.964 12 H 0.121 0.879 13 N -0.355 5.355 14 C 0.326 3.674 15 O -0.401 6.401 16 C -0.176 4.176 17 H 0.154 0.846 18 C -0.152 4.152 19 C -0.201 4.201 20 H 0.145 0.855 21 C 0.317 3.683 22 N -0.416 5.416 23 O -0.387 6.387 24 C 0.007 3.993 25 H 0.078 0.922 26 O -0.375 6.375 27 C 0.029 3.971 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.238 0.762 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.226 0.774 35 H 0.235 0.765 36 H 0.226 0.774 37 H 0.073 0.927 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.367 -19.758 3.937 20.193 hybrid contribution -0.318 1.069 1.232 1.663 sum 1.049 -18.689 5.169 19.419 Atomic orbital electron populations 1.69928 1.04885 1.24872 1.58009 1.24774 0.95770 0.97634 1.02482 0.86001 0.78813 0.83599 0.77161 1.20466 1.21740 1.21826 1.19166 0.90609 0.82217 1.42758 0.90266 1.44311 1.01211 1.00066 1.87233 1.21758 0.94602 0.85309 0.97274 1.22290 0.95016 0.79726 0.99355 0.87935 1.45599 1.52895 1.10783 1.26187 1.19340 0.78313 0.85513 0.84244 1.90699 1.47155 1.77918 1.24361 1.22290 0.95371 0.96664 1.03238 0.84622 1.23021 0.98248 1.00791 0.93172 1.22337 1.02140 1.00215 0.95435 0.85470 1.19610 0.79973 0.86041 0.82646 1.43729 1.58148 1.30649 1.09124 1.90903 1.53213 1.41672 1.52952 1.23531 0.95643 0.96984 0.83127 0.92220 1.86228 1.54436 1.67267 1.29566 1.21856 0.85690 0.87723 1.01869 0.93874 0.93658 0.95977 0.76173 0.86983 0.86504 0.77366 0.76473 0.77371 0.92712 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.50 10.31 55.49 0.57 -26.92 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.22 -6.43 10.28 -15.06 -0.15 -6.58 16 8 H 0.08 2.30 7.83 -52.49 -0.41 1.89 16 9 N -0.60 -16.24 3.39 -170.07 -0.58 -16.82 16 10 C 0.14 3.30 6.92 -2.53 -0.02 3.28 16 11 C 0.14 2.86 3.31 -65.78 -0.22 2.65 16 12 H 0.10 2.23 7.54 -51.93 -0.39 1.84 16 13 N -0.70 -11.74 5.17 -51.73 -0.27 -12.00 16 14 C 0.54 9.11 5.48 -10.98 -0.06 9.05 16 15 O -0.53 -11.21 16.14 5.41 0.09 -11.13 16 16 C -0.15 -1.73 6.17 -91.78 -0.57 -2.30 16 17 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 18 C -0.11 -1.17 9.58 -26.70 -0.26 -1.42 16 19 C -0.18 -1.71 6.19 -91.74 -0.57 -2.28 16 20 H 0.13 0.68 8.14 -51.92 -0.42 0.26 16 21 C 0.53 6.93 7.48 -10.99 -0.08 6.85 16 22 N -0.85 -7.63 8.87 31.22 0.28 -7.36 16 23 O -0.51 -9.65 15.74 5.41 0.09 -9.56 16 24 C 0.07 1.27 4.20 -24.90 -0.10 1.16 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 O -0.57 -9.35 12.15 -35.23 -0.43 -9.78 16 27 C 0.15 3.75 5.13 -3.07 -0.02 3.73 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.40 5.92 7.59 -40.82 -0.31 5.61 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.12 1.57 7.71 -51.93 -0.40 1.17 16 34 H 0.40 2.02 8.83 -40.82 -0.36 1.66 16 35 H 0.40 3.71 8.93 -40.82 -0.36 3.34 16 36 H 0.38 4.90 9.09 45.56 0.41 5.31 16 37 H 0.05 1.46 7.38 -51.93 -0.38 1.08 16 38 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 LS Contribution 322.36 15.07 4.86 4.86 Total: -1.00 -38.13 322.36 -6.82 -44.95 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -4.26 Total: 12.23 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: -2.14 Total: 13.72 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 0.00 Total: -63.10 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.26 Total: -30.47 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -38.13 -6.82 -44.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083784276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.292 kcal (2) G-P(sol) polarization free energy of solvation -38.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds