Wall clock time and date at job start Tue Mar 31 2020 02:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.87339 * 2 1 4 4 C 1.54329 * 109.88052 * 238.98675 * 2 1 3 5 5 H 1.08997 * 110.72154 * 336.93064 * 4 2 1 6 6 N 1.46497 * 110.71915 * 100.02773 * 4 2 1 7 7 C 1.34775 * 120.00016 * 205.00235 * 6 4 2 8 8 O 1.21287 * 120.00046 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00281 * 180.02562 * 7 6 4 10 10 H 1.09000 * 110.50790 * 38.70572 * 9 7 6 11 11 C 1.54098 * 110.56285 * 275.80514 * 9 7 6 12 12 O 1.45696 * 104.01018 * 241.42921 * 11 9 7 13 13 C 1.33779 * 109.47664 * 359.75188 * 12 11 9 14 14 O 1.21507 * 123.07461 * 180.24168 * 13 12 11 15 15 N 1.34004 * 113.85515 * 0.44116 * 13 12 11 16 16 C 1.55156 * 102.94343 * 218.39157 * 4 2 1 17 17 C 1.54908 * 101.57970 * 35.49935 * 16 4 2 18 18 N 1.47022 * 109.88185 * 121.18072 * 2 1 3 19 19 C 1.36938 * 125.64836 * 298.38951 * 18 2 1 20 20 H 1.08007 * 119.99635 * 0.02562 * 19 18 2 21 21 C 1.38806 * 119.99984 * 180.02562 * 19 18 2 22 22 N 1.31615 * 120.00102 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99724 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47094 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47004 * 119.99831 * 23 21 19 26 26 H 1.48498 * 109.47009 * 239.99344 * 23 21 19 27 27 H 1.08998 * 109.47242 * 181.01221 * 1 2 3 28 28 H 1.08999 * 109.47027 * 301.01298 * 1 2 3 29 29 H 1.09002 * 109.47301 * 61.01336 * 1 2 3 30 30 H 0.97000 * 120.00098 * 25.00009 * 6 4 2 31 31 H 1.09005 * 110.51841 * 0.05801 * 11 9 7 32 32 H 1.09002 * 110.52042 * 122.65495 * 11 9 7 33 33 H 0.97001 * 125.56192 * 179.83640 * 15 13 12 34 34 H 1.08992 * 111.00470 * 153.57768 * 16 4 2 35 35 H 1.09000 * 111.00079 * 277.43455 * 16 4 2 36 36 H 1.09004 * 110.36456 * 204.15481 * 17 16 4 37 37 H 1.08997 * 110.45823 * 81.87838 * 17 16 4 38 38 H 0.97001 * 119.99910 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3039 -1.4413 -1.6222 6 7 2.4554 0.1993 -2.2872 7 6 2.4581 -0.1832 -3.5796 8 8 2.1292 -1.3116 -3.8787 9 6 2.8707 0.7909 -4.6529 10 1 3.7053 1.4036 -4.3122 11 6 1.6794 1.6759 -5.0677 12 8 1.4888 1.3717 -6.4797 13 6 2.3977 0.4703 -6.8685 14 8 2.4650 0.0438 -8.0042 15 7 3.2245 0.0775 -5.8897 16 6 3.2876 -1.5133 -0.6947 17 6 2.8145 -1.8805 0.7340 18 7 2.0300 -0.7158 1.1829 19 6 1.8039 -0.3600 2.4857 20 1 1.2121 0.5148 2.7117 21 6 2.3352 -1.1237 3.5159 22 7 3.0558 -2.1900 3.2406 23 14 2.0260 -0.6386 5.2933 24 1 1.1922 0.5894 5.3333 25 1 1.3177 -1.7416 5.9913 26 1 3.3230 -0.3781 5.9680 27 1 -0.3633 -1.0275 0.0182 28 1 -0.3633 0.5295 0.8808 29 1 -0.3634 0.4980 -0.8989 30 1 2.7188 1.1017 -2.0480 31 1 0.7896 1.4112 -4.4963 32 1 1.9206 2.7300 -4.9309 33 1 3.9420 -0.5685 -5.9827 34 1 3.4851 -2.4092 -1.2832 35 1 4.1653 -0.8679 -0.6617 36 1 3.6716 -2.0358 1.3892 37 1 2.1890 -2.7729 0.7106 38 1 3.4268 -2.7238 3.9605 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088550138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:05 Heat of formation + Delta-G solvation = -73.153417 kcal Electronic energy + Delta-G solvation = -22672.247167 eV Core-core repulsion = 19130.148782 eV Total energy + Delta-G solvation = -3542.098385 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06185 -39.75162 -37.80771 -37.30876 -34.94659 -34.30330 -32.24313 -30.59010 -30.20208 -28.61816 -25.64441 -24.20705 -24.02882 -22.68394 -21.01752 -20.40370 -19.89148 -18.48448 -18.06946 -17.25691 -16.89799 -16.40900 -15.85889 -15.15250 -14.92636 -14.66952 -14.56492 -14.17844 -14.01867 -13.78942 -13.57434 -12.94511 -12.75086 -12.26417 -12.10021 -11.70027 -11.26628 -11.21084 -10.99231 -10.95614 -10.94062 -10.74290 -10.65088 -10.38326 -10.15193 -9.89283 -9.70376 -9.48172 -8.91313 -8.74870 -6.98614 -5.75354 -3.18797 2.16745 2.27928 2.46218 2.85687 3.29427 3.32982 3.38663 3.41160 3.69090 4.20175 4.25665 4.40604 4.65832 4.83371 5.00959 5.13474 5.30399 5.39472 5.48726 5.66136 5.97747 6.05591 6.15153 6.18929 6.35767 6.42242 6.44416 6.55720 6.72533 6.88050 6.94586 7.34511 7.42715 7.52721 7.74541 7.77839 8.01029 8.24539 9.10383 9.71374 10.33945 11.28039 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.045986 B = 0.003438 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.733146 B = 8141.681574 C = 8454.171328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.037 0.963 4 C 0.132 3.868 5 H 0.096 0.904 6 N -0.706 5.706 7 C 0.499 3.501 8 O -0.520 6.520 9 C 0.075 3.925 10 H 0.127 0.873 11 C 0.055 3.945 12 O -0.323 6.323 13 C 0.652 3.348 14 O -0.520 6.520 15 N -0.709 5.709 16 C -0.153 4.153 17 C 0.152 3.848 18 N -0.595 5.595 19 C -0.223 4.223 20 H 0.079 0.921 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.401 0.599 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.441 0.559 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.015 0.985 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 9.293 -12.022 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.054 0.946 4 C 0.028 3.972 5 H 0.114 0.886 6 N -0.357 5.357 7 C 0.281 3.719 8 O -0.395 6.395 9 C -0.035 4.035 10 H 0.145 0.855 11 C -0.021 4.021 12 O -0.233 6.233 13 C 0.404 3.596 14 O -0.404 6.404 15 N -0.382 5.382 16 C -0.192 4.192 17 C 0.027 3.973 18 N -0.320 5.320 19 C -0.351 4.351 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.235 0.765 31 H 0.130 0.870 32 H 0.139 0.861 33 H 0.285 0.715 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.033 0.967 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.511 8.396 -12.731 15.259 hybrid contribution 0.311 0.280 1.334 1.399 sum 0.823 8.676 -11.396 14.347 Atomic orbital electron populations 1.22258 0.97813 1.01549 0.99981 1.20991 0.92659 0.94761 0.86830 0.94569 1.22272 0.97926 0.90720 0.86258 0.88614 1.46068 1.67436 1.16542 1.05690 1.20439 0.79083 0.88750 0.83588 1.90786 1.46701 1.20078 1.81944 1.22355 1.00222 0.93931 0.87011 0.85523 1.24263 0.98152 1.00768 0.78885 1.87295 1.51871 1.57070 1.27085 1.18407 0.77865 0.78115 0.85180 1.91090 1.72667 1.58620 1.18043 1.45652 1.37095 1.47429 1.08021 1.23400 0.96600 0.99307 0.99918 1.21962 0.97493 0.88457 0.89409 1.44493 1.59243 1.28211 1.00079 1.19060 1.27273 1.08350 0.80404 0.90340 1.24796 1.00227 0.97311 0.98142 1.69791 1.38986 1.17826 1.30207 0.86007 0.77389 0.77581 0.84533 1.20510 1.21713 1.21720 0.92885 0.92592 0.94348 0.76470 0.87011 0.86097 0.71548 0.91976 0.91854 0.87234 0.96673 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.13 37.16 0.34 -2.28 16 2 C 0.16 2.77 3.48 -66.95 -0.23 2.54 16 3 H 0.04 0.61 7.71 -51.93 -0.40 0.21 16 4 C 0.13 2.08 2.85 -66.10 -0.19 1.89 16 5 H 0.10 1.67 7.25 -51.93 -0.38 1.29 16 6 N -0.71 -7.74 5.18 -52.03 -0.27 -8.01 16 7 C 0.50 5.61 6.93 -10.99 -0.08 5.53 16 8 O -0.52 -8.38 16.24 5.55 0.09 -8.29 16 9 C 0.08 0.55 4.17 -68.18 -0.28 0.26 16 10 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 11 C 0.05 0.35 7.87 37.73 0.30 0.64 16 12 O -0.32 -3.58 11.09 -37.85 -0.42 -4.00 16 13 C 0.65 8.36 9.16 53.71 0.49 8.85 16 14 O -0.52 -8.70 18.04 -19.11 -0.34 -9.04 16 15 N -0.71 -6.88 5.65 -59.35 -0.34 -7.21 16 16 C -0.15 -2.70 6.77 -24.58 -0.17 -2.87 16 17 C 0.15 3.46 5.89 -2.53 -0.01 3.44 16 18 N -0.60 -13.78 3.13 -162.57 -0.51 -14.29 16 19 C -0.22 -5.73 9.89 -15.06 -0.15 -5.88 16 20 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -25.58 10.09 55.49 0.56 -25.02 16 23 Si 0.91 21.02 29.55 -169.99 -5.02 16.00 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.40 3.12 8.37 -40.82 -0.34 2.78 16 31 H 0.11 0.68 7.72 -51.93 -0.40 0.28 16 32 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.44 3.80 8.96 -40.82 -0.37 3.44 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.11 2.83 5.87 -51.93 -0.30 2.52 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 318.99 15.07 4.81 4.81 Total: -1.00 -34.25 318.99 -6.64 -40.88 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.11 Total: 2.37 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -0.08 Total: 11.80 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.55 Total: -54.53 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.67 Total: -21.33 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.25 -6.64 -40.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088550138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.270 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds