Wall clock time and date at job start Tue Mar 31 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.87339 * 2 1 4 4 C 1.54329 * 109.88052 * 238.98675 * 2 1 3 5 5 H 1.08997 * 110.72154 * 336.93064 * 4 2 1 6 6 N 1.46497 * 110.71915 * 100.02773 * 4 2 1 7 7 C 1.34775 * 120.00016 * 205.00235 * 6 4 2 8 8 O 1.21287 * 120.00046 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00281 * 180.02562 * 7 6 4 10 10 H 1.09000 * 110.50790 * 38.70572 * 9 7 6 11 11 C 1.54098 * 110.56285 * 275.80514 * 9 7 6 12 12 O 1.45696 * 104.01018 * 241.42921 * 11 9 7 13 13 C 1.33779 * 109.47664 * 359.75188 * 12 11 9 14 14 O 1.21507 * 123.07461 * 180.24168 * 13 12 11 15 15 N 1.34004 * 113.85515 * 0.44116 * 13 12 11 16 16 C 1.55156 * 102.94343 * 218.39157 * 4 2 1 17 17 C 1.54908 * 101.57970 * 35.49935 * 16 4 2 18 18 N 1.47022 * 109.88185 * 121.18072 * 2 1 3 19 19 C 1.36938 * 125.64836 * 298.38951 * 18 2 1 20 20 H 1.08007 * 119.99635 * 0.02562 * 19 18 2 21 21 C 1.38806 * 119.99984 * 180.02562 * 19 18 2 22 22 N 1.31615 * 120.00102 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99724 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47094 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47004 * 119.99831 * 23 21 19 26 26 H 1.48498 * 109.47009 * 239.99344 * 23 21 19 27 27 H 1.08998 * 109.47242 * 181.01221 * 1 2 3 28 28 H 1.08999 * 109.47027 * 301.01298 * 1 2 3 29 29 H 1.09002 * 109.47301 * 61.01336 * 1 2 3 30 30 H 0.97000 * 120.00098 * 25.00009 * 6 4 2 31 31 H 1.09005 * 110.51841 * 0.05801 * 11 9 7 32 32 H 1.09002 * 110.52042 * 122.65495 * 11 9 7 33 33 H 0.97001 * 125.56192 * 179.83640 * 15 13 12 34 34 H 1.08992 * 111.00470 * 153.57768 * 16 4 2 35 35 H 1.09000 * 111.00079 * 277.43455 * 16 4 2 36 36 H 1.09004 * 110.36456 * 204.15481 * 17 16 4 37 37 H 1.08997 * 110.45823 * 81.87838 * 17 16 4 38 38 H 0.97001 * 119.99910 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3039 -1.4413 -1.6222 6 7 2.4554 0.1993 -2.2872 7 6 2.4581 -0.1832 -3.5796 8 8 2.1292 -1.3116 -3.8787 9 6 2.8707 0.7909 -4.6529 10 1 3.7053 1.4036 -4.3122 11 6 1.6794 1.6759 -5.0677 12 8 1.4888 1.3717 -6.4797 13 6 2.3977 0.4703 -6.8685 14 8 2.4650 0.0438 -8.0042 15 7 3.2245 0.0775 -5.8897 16 6 3.2876 -1.5133 -0.6947 17 6 2.8145 -1.8805 0.7340 18 7 2.0300 -0.7158 1.1829 19 6 1.8039 -0.3600 2.4857 20 1 1.2121 0.5148 2.7117 21 6 2.3352 -1.1237 3.5159 22 7 3.0558 -2.1900 3.2406 23 14 2.0260 -0.6386 5.2933 24 1 1.1922 0.5894 5.3333 25 1 1.3177 -1.7416 5.9913 26 1 3.3230 -0.3781 5.9680 27 1 -0.3633 -1.0275 0.0182 28 1 -0.3633 0.5295 0.8808 29 1 -0.3634 0.4980 -0.8989 30 1 2.7188 1.1017 -2.0480 31 1 0.7896 1.4112 -4.4963 32 1 1.9206 2.7300 -4.9309 33 1 3.9420 -0.5685 -5.9827 34 1 3.4851 -2.4092 -1.2832 35 1 4.1653 -0.8679 -0.6617 36 1 3.6716 -2.0358 1.3892 37 1 2.1890 -2.7729 0.7106 38 1 3.4268 -2.7238 3.9605 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088550138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:04 Heat of formation + Delta-G solvation = -101.542025 kcal Electronic energy + Delta-G solvation = -22673.478190 eV Core-core repulsion = 19130.148782 eV Total energy + Delta-G solvation = -3543.329408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.86155 -40.85184 -39.20674 -38.31697 -35.79821 -35.61812 -33.89697 -32.05830 -31.23407 -30.09043 -26.83740 -25.87721 -25.12542 -23.52722 -22.27454 -21.67106 -21.37898 -19.27500 -18.98708 -18.65041 -18.08676 -17.55068 -16.92672 -16.66432 -16.01408 -15.92619 -15.58855 -15.33511 -15.17107 -15.01836 -14.49586 -14.31562 -14.00124 -13.75217 -13.37402 -13.21154 -12.92240 -12.74578 -12.60764 -12.24107 -12.13145 -12.02826 -11.93606 -11.87730 -11.55942 -11.46272 -11.42129 -10.72924 -10.34874 -10.07480 -8.87810 -7.73663 -5.18226 1.29657 1.41861 1.49911 1.50982 1.60304 1.64527 1.98436 2.52313 2.60921 3.11259 3.36698 3.40556 3.65239 3.80952 3.88177 3.96543 4.09708 4.23975 4.47155 4.51852 4.53528 4.65525 4.70065 4.83525 4.96169 5.06850 5.14499 5.38111 5.52864 5.61881 5.62854 5.65546 5.82708 6.08953 6.32875 6.48279 6.90574 7.13066 7.15472 7.81575 8.43912 9.28211 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.045986 B = 0.003438 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.733146 B = 8141.681574 C = 8454.171328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.151 3.849 3 H 0.063 0.937 4 C 0.152 3.848 5 H 0.078 0.922 6 N -0.689 5.689 7 C 0.502 3.498 8 O -0.572 6.572 9 C 0.086 3.914 10 H 0.182 0.818 11 C 0.051 3.949 12 O -0.338 6.338 13 C 0.649 3.351 14 O -0.572 6.572 15 N -0.702 5.702 16 C -0.137 4.137 17 C 0.154 3.846 18 N -0.615 5.615 19 C -0.222 4.222 20 H 0.088 0.912 21 C -0.070 4.070 22 N -0.951 5.951 23 Si 0.975 3.025 24 H -0.263 1.263 25 H -0.300 1.300 26 H -0.294 1.294 27 H 0.029 0.971 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.422 0.578 31 H 0.115 0.885 32 H 0.173 0.827 33 H 0.444 0.556 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.076 0.924 37 H -0.020 1.020 38 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.026 12.485 -12.511 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.044 3.956 3 H 0.081 0.919 4 C 0.046 3.954 5 H 0.096 0.904 6 N -0.342 5.342 7 C 0.287 3.713 8 O -0.450 6.450 9 C -0.023 4.023 10 H 0.199 0.801 11 C -0.023 4.023 12 O -0.248 6.248 13 C 0.402 3.598 14 O -0.461 6.461 15 N -0.374 5.374 16 C -0.177 4.177 17 C 0.029 3.971 18 N -0.340 5.340 19 C -0.351 4.351 20 H 0.105 0.895 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.804 3.196 24 H -0.187 1.187 25 H -0.228 1.228 26 H -0.221 1.221 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.261 0.739 31 H 0.134 0.866 32 H 0.191 0.809 33 H 0.288 0.712 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.094 0.906 37 H -0.002 1.002 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.531 11.674 -13.209 17.637 hybrid contribution 0.250 -0.697 1.504 1.676 sum 0.781 10.977 -11.706 16.067 Atomic orbital electron populations 1.22162 0.96804 1.00475 1.01433 1.21239 0.93315 0.95465 0.85547 0.91922 1.21724 0.96166 0.90904 0.86652 0.90417 1.45738 1.67058 1.16678 1.04695 1.21141 0.77517 0.88656 0.83990 1.90789 1.48791 1.22746 1.82689 1.22645 1.02530 0.92767 0.84402 0.80058 1.24790 0.97952 1.03300 0.76296 1.87266 1.51384 1.56385 1.29773 1.18553 0.78126 0.78118 0.84994 1.91040 1.74138 1.60527 1.20365 1.45688 1.36231 1.47189 1.08298 1.23182 0.97920 1.00029 0.96561 1.21674 0.95684 0.87766 0.91991 1.44740 1.59724 1.28568 1.00961 1.19433 1.25959 1.07999 0.81755 0.89458 1.25577 1.01007 0.97798 1.01801 1.70045 1.40524 1.19054 1.30546 0.85050 0.76974 0.77387 0.80172 1.18721 1.22782 1.22098 0.95173 0.93493 0.90548 0.73890 0.86648 0.80940 0.71156 0.91904 0.90359 0.90594 1.00238 0.94587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 9.13 71.98 0.66 -4.01 16 2 C 0.15 5.02 3.48 45.34 0.16 5.17 16 3 H 0.06 1.81 7.71 -2.38 -0.02 1.79 16 4 C 0.15 4.44 2.85 46.18 0.13 4.57 16 5 H 0.08 2.63 7.25 -2.39 -0.02 2.62 16 6 N -0.69 -12.25 5.18 -436.91 -2.26 -14.51 16 7 C 0.50 9.53 6.93 87.66 0.61 10.14 16 8 O -0.57 -17.50 16.24 -3.05 -0.05 -17.55 16 9 C 0.09 0.84 4.17 44.50 0.19 1.03 16 10 H 0.18 -0.04 8.14 -2.39 -0.02 -0.06 16 11 C 0.05 0.40 7.87 72.35 0.57 0.96 16 12 O -0.34 -6.63 11.09 -47.39 -0.53 -7.15 16 13 C 0.65 15.74 9.16 129.91 1.19 16.93 16 14 O -0.57 -19.27 18.04 19.66 0.35 -18.91 16 15 N -0.70 -11.85 5.65 -573.39 -3.24 -15.09 16 16 C -0.14 -4.75 6.77 31.99 0.22 -4.53 16 17 C 0.15 7.23 5.89 86.86 0.51 7.74 16 18 N -0.61 -28.30 3.13 -668.25 -2.09 -30.39 16 19 C -0.22 -11.37 9.89 84.03 0.83 -10.54 16 20 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 22 N -0.95 -54.77 10.09 21.65 0.22 -54.55 16 23 Si 0.97 43.55 29.55 68.60 2.03 45.58 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 27 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.54 8.04 -2.39 -0.02 1.52 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.42 4.11 8.37 -92.71 -0.78 3.33 16 31 H 0.12 0.87 7.72 -2.38 -0.02 0.85 16 32 H 0.17 -0.36 8.14 -2.39 -0.02 -0.37 16 33 H 0.44 6.85 8.96 -92.71 -0.83 6.02 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.08 4.09 5.87 -2.38 -0.01 4.08 16 37 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 38 H 0.24 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -80.22 318.99 -0.55 -80.77 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -0.50 Total: 7.63 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 5.52 Total: 24.18 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -7.38 Total: -114.54 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.22 Total: -43.61 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -80.22 -0.55 -80.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088550138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.775 kcal (2) G-P(sol) polarization free energy of solvation -80.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds