Wall clock time and date at job start Tue Mar 31 2020 02:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35456 * 126.78180 * 2 1 4 4 C 1.41377 * 103.98471 * 180.09495 * 3 2 1 5 5 C 1.50700 * 126.80040 * 179.88360 * 4 3 2 6 6 O 1.42901 * 109.46955 * 359.71380 * 5 4 3 7 7 C 1.42905 * 114.00134 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47264 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99926 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99773 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99642 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46995 * 180.02562 * 11 10 8 13 13 N 1.46496 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.36937 * 119.99946 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00046 * 359.97438 * 14 13 12 16 16 C 1.38814 * 120.00249 * 180.02562 * 14 13 12 17 17 N 1.31625 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00093 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47326 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47141 * 119.99681 * 18 16 14 21 21 H 1.48502 * 109.47486 * 239.99534 * 18 16 14 22 22 N 1.30173 * 106.39655 * 359.62487 * 4 3 2 23 23 O 1.20920 * 111.60788 * 0.24233 * 22 4 3 24 24 H 1.08992 * 109.47163 * 180.30615 * 1 2 3 25 25 H 1.09000 * 109.46893 * 300.30604 * 1 2 3 26 26 H 1.08999 * 109.47040 * 60.30052 * 1 2 3 27 27 H 1.07995 * 128.00234 * 359.95650 * 3 2 1 28 28 H 1.08994 * 109.47512 * 239.71349 * 5 4 3 29 29 H 1.09002 * 109.46988 * 119.70796 * 5 4 3 30 30 H 1.09001 * 109.47103 * 300.00246 * 7 6 5 31 31 H 1.09004 * 109.47054 * 59.99750 * 7 6 5 32 32 H 0.96998 * 120.00166 * 0.02562 * 10 8 7 33 33 H 1.08998 * 109.47245 * 299.99628 * 11 10 8 34 34 H 1.08996 * 109.47815 * 60.00326 * 11 10 8 35 35 H 1.09001 * 109.47002 * 299.99701 * 12 11 10 36 36 H 1.08996 * 109.47451 * 60.00130 * 12 11 10 37 37 H 0.97002 * 120.00387 * 359.97438 * 13 12 11 38 38 H 0.96996 * 119.99472 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5371 -0.0023 5 6 4.9211 1.2998 -0.0057 6 8 4.6501 2.7028 -0.0131 7 6 5.8217 3.5211 -0.0163 8 6 5.4199 4.9736 -0.0247 9 8 4.2459 5.2780 -0.0272 10 7 6.3652 5.9342 -0.0283 11 6 5.9746 7.3461 -0.0359 12 6 7.2290 8.2223 -0.0395 13 7 6.8384 9.6342 -0.0464 14 6 7.7988 10.6102 -0.0501 15 1 8.8443 10.3392 -0.0474 16 6 7.4288 11.9481 -0.0561 17 7 6.1547 12.2786 -0.0589 18 14 8.7390 13.2796 -0.0604 19 1 10.0841 12.6504 -0.0569 20 1 8.5885 14.1183 -1.2767 21 1 8.5859 14.1287 1.1483 22 7 3.4763 -0.7565 0.0048 23 8 2.3094 -1.0737 0.0062 24 1 -0.3633 -1.0276 0.0055 25 1 -0.3633 0.5186 0.8872 26 1 -0.3633 0.5092 -0.8927 27 1 2.0346 2.1270 -0.0006 28 1 5.4950 1.0359 -0.8940 29 1 5.4941 1.0451 0.8859 30 1 6.4130 3.3125 0.8753 31 1 6.4146 3.3034 -0.9047 32 1 7.3041 5.6907 -0.0260 33 1 5.3837 7.5548 -0.9277 34 1 5.3815 7.5639 0.8522 35 1 7.8204 8.0137 0.8521 36 1 7.8218 8.0045 -0.9278 37 1 5.8995 9.8777 -0.0485 38 1 5.8962 13.2134 -0.0635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130114579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:38 Heat of formation + Delta-G solvation = -5.837991 kcal Electronic energy + Delta-G solvation = -20666.463849 eV Core-core repulsion = 17127.284479 eV Total energy + Delta-G solvation = -3539.179369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.21234 -39.79177 -38.04418 -35.69774 -34.52792 -33.88624 -33.64367 -31.36944 -29.52768 -28.10600 -27.76970 -26.33723 -23.56661 -23.16121 -21.53402 -20.90637 -20.29804 -18.00849 -17.77006 -17.47251 -16.99954 -16.69385 -16.65207 -15.41005 -15.20016 -14.99689 -14.56271 -14.12785 -14.01935 -13.92906 -13.62027 -13.34454 -13.19704 -12.87830 -12.79796 -12.71029 -12.16537 -11.47932 -11.46809 -11.14859 -10.85160 -10.85010 -10.67234 -10.11394 -9.97709 -9.90429 -9.71380 -9.57514 -9.04052 -8.88507 -7.02474 -5.82378 -3.13335 1.15879 1.92734 2.47125 2.60781 2.82416 3.40248 3.43654 3.47781 3.48988 4.07903 4.33809 4.54052 4.59999 4.71331 4.79735 4.80355 4.86250 4.96149 5.01976 5.03032 5.09223 5.38694 5.47112 5.47195 5.51893 5.73700 5.83753 5.91708 6.10299 6.41352 6.53398 6.66032 6.71283 7.52095 7.63678 7.93790 8.23518 8.35204 9.46512 10.01001 10.35518 11.40203 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.050847 B = 0.002057 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.544520 B =13607.625101 C =14121.814791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.205 4.205 4 C 0.018 3.982 5 C 0.144 3.856 6 O -0.356 6.356 7 C 0.047 3.953 8 C 0.511 3.489 9 O -0.520 6.520 10 N -0.721 5.721 11 C 0.112 3.888 12 C 0.145 3.855 13 N -0.730 5.730 14 C -0.244 4.244 15 H 0.073 0.927 16 C -0.013 4.013 17 N -0.930 5.930 18 Si 0.911 3.089 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 N -0.363 5.363 23 O 0.100 5.900 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.179 0.821 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.400 0.600 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.386 0.614 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 -26.902 0.139 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.226 4.226 4 C -0.140 4.140 5 C 0.066 3.934 6 O -0.273 6.273 7 C -0.033 4.033 8 C 0.295 3.705 9 O -0.395 6.395 10 N -0.375 5.375 11 C -0.011 4.011 12 C 0.017 3.983 13 N -0.375 5.375 14 C -0.375 4.375 15 H 0.091 0.909 16 C -0.209 4.209 17 N -0.578 5.578 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 N -0.068 5.068 23 O 0.032 5.968 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.196 0.804 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.220 0.780 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.641 -27.521 0.142 28.094 hybrid contribution 0.856 1.477 -0.006 1.707 sum -4.785 -26.044 0.136 26.481 Atomic orbital electron populations 1.20346 0.83779 1.04555 1.04406 1.24569 0.96497 0.85905 1.03245 1.22465 0.90642 1.01592 1.07924 1.23107 0.97159 0.90121 1.03644 1.20314 0.90463 0.80535 1.02092 1.87959 1.29191 1.14580 1.95581 1.22243 0.88490 0.89577 1.03032 1.20061 0.86350 0.86735 0.77349 1.90746 1.17785 1.83167 1.47787 1.45792 1.09433 1.06749 1.75503 1.21600 0.98745 0.77997 1.02742 1.20757 0.93189 0.85935 0.98464 1.42197 1.07002 0.98595 1.89701 1.19236 0.88699 0.86198 1.43405 0.90947 1.24798 0.96230 0.97232 1.02647 1.69681 1.14123 1.16804 1.57186 0.86070 0.80537 0.81998 0.77246 1.20508 1.21763 1.21758 1.73766 0.97441 1.15272 1.20368 1.84804 1.11030 1.33224 1.67708 0.89945 0.89011 0.89012 0.80385 0.90615 0.90617 0.89807 0.89816 0.76585 0.91144 0.91135 0.95751 0.95746 0.77977 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.45 36.00 0.38 0.04 16 2 C -0.04 -0.34 7.49 -35.30 -0.26 -0.60 16 3 C -0.20 -2.14 10.45 -39.38 -0.41 -2.55 16 4 C 0.02 0.20 7.28 -82.10 -0.60 -0.40 16 5 C 0.14 1.31 6.56 36.01 0.24 1.54 16 6 O -0.36 -4.09 9.37 -55.14 -0.52 -4.61 16 7 C 0.05 0.43 6.42 36.01 0.23 0.66 16 8 C 0.51 6.98 7.91 -10.98 -0.09 6.89 16 9 O -0.52 -9.67 16.50 -14.35 -0.24 -9.90 16 10 N -0.72 -9.13 5.56 -60.30 -0.33 -9.47 16 11 C 0.11 1.87 5.79 -4.04 -0.02 1.85 16 12 C 0.14 2.75 6.37 -4.04 -0.03 2.72 16 13 N -0.73 -18.32 5.60 -59.91 -0.34 -18.66 16 14 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 15 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 18 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 N -0.36 -4.23 12.07 33.42 0.40 -3.83 16 23 O 0.10 1.04 11.20 17.17 0.19 1.23 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.18 1.87 8.05 -52.49 -0.42 1.45 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.40 3.67 8.47 -40.82 -0.35 3.33 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.29 7.67 -40.82 -0.31 9.98 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -35.75 338.32 -6.12 -41.87 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.28 Total: 5.73 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.81 Total: 2.78 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.46 Total: -59.33 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.56 Total: -13.28 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.75 -6.12 -41.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130114579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.036 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds