Wall clock time and date at job start Tue Mar 31 2020 02:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48503 * 109.47283 * 270.00067 * 3 2 1 5 5 H 1.48500 * 109.47205 * 30.00148 * 3 2 1 6 6 H 1.48501 * 109.47099 * 150.00189 * 3 2 1 7 7 C 1.38813 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 N 1.46500 * 109.47473 * 179.97438 * 16 15 13 18 18 C 1.33875 * 122.76488 * 269.71158 * 17 16 15 19 19 O 1.21230 * 125.39200 * 359.97438 * 18 17 16 20 20 C 1.51315 * 109.20750 * 179.83865 * 18 17 16 21 21 C 1.54230 * 103.55426 * 0.38916 * 20 18 17 22 22 C 1.33875 * 122.75903 * 89.99982 * 17 16 15 23 23 O 1.21226 * 125.40090 * 359.97438 * 22 17 16 24 24 H 0.97001 * 119.99359 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 27 27 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 28 28 H 1.09001 * 109.46832 * 60.00052 * 11 10 9 29 29 H 1.09002 * 109.47153 * 300.00243 * 11 10 9 30 30 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 33 33 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 34 34 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 35 35 H 1.08998 * 110.79380 * 241.77795 * 20 18 17 36 36 H 1.09002 * 110.54273 * 118.87508 * 20 18 17 37 37 H 1.08995 * 110.60329 * 241.25892 * 21 20 18 38 38 H 1.08997 * 110.60287 * 118.29489 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 7 1.7962 -6.0884 0.0018 13 6 1.1222 -7.2556 0.0019 14 8 -0.0906 -7.2556 0.0020 15 6 1.8757 -8.5607 0.0031 16 6 0.8814 -9.7236 0.0036 17 7 1.6138 -10.9924 0.0042 18 6 1.9711 -11.6232 -1.1212 19 8 1.7404 -11.2361 -2.2467 20 6 2.7116 -12.8941 -0.7660 21 6 2.7115 -12.8934 0.7763 22 6 1.9760 -11.6193 1.1303 23 8 1.7509 -11.2280 2.2554 24 1 -0.4849 0.8401 0.0004 25 1 0.3555 -2.3880 0.0005 26 1 2.6846 -3.7145 0.8905 27 1 2.6846 -3.7146 -0.8894 28 1 0.4367 -4.7621 -0.8886 29 1 0.4373 -4.7618 0.8914 30 1 2.7661 -6.0885 0.0014 31 1 2.5029 -8.6190 -0.8864 32 1 2.5017 -8.6181 0.8936 33 1 0.2545 -9.6652 0.8934 34 1 0.2550 -9.6666 -0.8865 35 1 3.7315 -12.8679 -1.1496 36 1 2.1810 -13.7658 -1.1492 37 1 3.7314 -12.8669 1.1599 38 1 2.1787 -13.7633 1.1602 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130994466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:12 Heat of formation + Delta-G solvation = -122.340523 kcal Electronic energy + Delta-G solvation = -21228.222207 eV Core-core repulsion = 17683.990908 eV Total energy + Delta-G solvation = -3544.231298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.88523 -40.84590 -39.65353 -37.43587 -36.98423 -35.56644 -35.14135 -33.23838 -31.71490 -29.40418 -27.08030 -26.22485 -24.97463 -23.28407 -23.10254 -21.57998 -20.43900 -19.36470 -18.75998 -17.94172 -17.60817 -17.54819 -16.95146 -16.92499 -16.49854 -15.77986 -15.75774 -15.29169 -15.26108 -15.10410 -14.90149 -14.69328 -14.42712 -14.34744 -13.62248 -13.41469 -13.12198 -13.06536 -12.69341 -12.54685 -12.43040 -12.10545 -12.06150 -11.88699 -11.69238 -11.22219 -11.07961 -11.01443 -10.88383 -10.22710 -9.09476 -7.98945 -5.30804 0.50038 1.39226 1.47299 1.48252 1.49844 1.58303 1.68812 2.11922 2.56480 3.23339 3.30025 3.35242 3.53070 3.66869 3.75519 3.81753 3.98097 4.13456 4.17484 4.23118 4.29309 4.36204 4.51075 4.55019 4.76228 4.82703 4.94973 4.98443 4.98735 5.09433 5.30796 5.46471 5.82213 6.21719 6.33106 6.42203 6.72883 7.11419 7.27798 7.99225 8.22294 9.24789 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.042515 B = 0.002344 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.426783 B =11942.174657 C =12019.570475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.981 3.019 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.249 4.249 8 H 0.084 0.916 9 N -0.748 5.748 10 C 0.149 3.851 11 C 0.126 3.874 12 N -0.709 5.709 13 C 0.515 3.485 14 O -0.585 6.585 15 C -0.138 4.138 16 C 0.113 3.887 17 N -0.579 5.579 18 C 0.518 3.482 19 O -0.523 6.523 20 C -0.140 4.140 21 C -0.139 4.139 22 C 0.518 3.482 23 O -0.523 6.523 24 H 0.253 0.747 25 H 0.374 0.626 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.419 0.581 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.407 -32.440 0.043 34.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.380 4.380 8 H 0.102 0.898 9 N -0.392 5.392 10 C 0.022 3.978 11 C 0.001 3.999 12 N -0.362 5.362 13 C 0.302 3.698 14 O -0.465 6.465 15 C -0.179 4.179 16 C -0.010 4.010 17 N -0.321 5.321 18 C 0.310 3.690 19 O -0.397 6.397 20 C -0.179 4.179 21 C -0.178 4.178 22 C 0.310 3.690 23 O -0.397 6.397 24 H 0.061 0.939 25 H 0.205 0.795 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.256 0.744 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.470 -31.908 0.052 33.582 hybrid contribution -0.285 1.636 -0.018 1.661 sum 10.185 -30.272 0.034 31.940 Atomic orbital electron populations 1.69845 1.06882 1.26339 1.59092 1.25710 0.96476 1.01588 1.03297 0.85030 0.77693 0.78819 0.77517 1.21224 1.22274 1.18969 1.19656 0.91747 0.84828 1.41813 0.89847 1.42441 1.05773 1.01139 1.89804 1.20847 0.93557 0.84040 0.99314 1.21172 0.94872 0.82673 1.01154 1.45719 1.11310 1.04667 1.74454 1.20895 0.87736 0.86185 0.75007 1.90721 1.16025 1.88312 1.51481 1.21829 0.99327 0.89811 1.06925 1.21275 0.93877 0.81021 1.04818 1.47037 1.51920 1.22568 1.10612 1.21859 0.77267 0.87131 0.82718 1.90802 1.54894 1.71214 1.22836 1.22608 1.04756 0.94703 0.95786 1.22613 1.04798 0.94628 0.95796 1.21863 0.77206 0.87208 0.82712 1.90801 1.54941 1.71131 1.22866 0.93872 0.79479 0.94399 0.94385 0.92815 0.92816 0.74413 0.86302 0.86312 0.89561 0.89562 0.83278 0.83710 0.83308 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.75 -38.68 5.60 -343.45 -1.92 -40.61 16 10 C 0.15 5.77 6.37 86.38 0.55 6.32 16 11 C 0.13 4.42 5.79 86.38 0.50 4.92 16 12 N -0.71 -18.76 5.56 -463.06 -2.57 -21.33 16 13 C 0.51 14.41 7.83 87.66 0.69 15.10 16 14 O -0.59 -21.88 15.98 -3.03 -0.05 -21.93 16 15 C -0.14 -2.62 6.02 29.85 0.18 -2.44 16 16 C 0.11 2.39 4.84 86.38 0.42 2.81 16 17 N -0.58 -8.83 2.55 -756.66 -1.93 -10.76 16 18 C 0.52 6.81 8.08 87.99 0.71 7.52 16 19 O -0.52 -11.59 17.47 -2.87 -0.05 -11.64 16 20 C -0.14 -0.07 7.03 30.46 0.21 0.14 16 21 C -0.14 -0.07 7.03 30.46 0.21 0.14 16 22 C 0.52 6.80 8.08 87.99 0.71 7.51 16 23 O -0.52 -11.58 17.48 -2.86 -0.05 -11.63 16 24 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.37 20.91 7.67 -92.71 -0.71 20.20 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.42 7.99 8.47 -92.71 -0.79 7.21 16 31 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 2.11 7.79 -2.39 -0.02 2.09 16 34 H 0.09 2.11 7.78 -2.39 -0.02 2.09 16 35 H 0.15 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H 0.15 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.15 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.15 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: -1.00 -84.12 334.40 0.82 -83.30 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.40 Total: 21.96 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 5.49 Total: 24.86 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -6.15 Total: -133.05 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -0.15 Total: -45.21 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -84.12 0.82 -83.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130994466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.043 kcal (2) G-P(sol) polarization free energy of solvation -84.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds