Wall clock time and date at job start Tue Mar 31 2020 03:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45754 * 117.94817 * 2 1 4 4 C 1.52923 * 110.48888 * 199.07751 * 3 2 1 5 5 C 1.53345 * 108.67450 * 309.24706 * 4 3 2 6 6 C 1.53069 * 108.42512 * 67.52925 * 5 4 3 7 7 H 1.09007 * 109.39723 * 71.22804 * 6 5 4 8 8 C 1.50698 * 109.40026 * 190.96958 * 6 5 4 9 9 O 1.21273 * 120.00375 * 0.02562 * 8 6 5 10 10 N 1.34783 * 119.99815 * 180.02562 * 8 6 5 11 11 C 1.46494 * 119.99829 * 179.97438 * 10 8 6 12 12 C 1.50700 * 109.47073 * 179.97438 * 11 10 8 13 13 O 1.21292 * 120.00176 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00089 * 180.02562 * 12 11 10 15 15 C 1.37093 * 119.99795 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00332 * 0.02562 * 15 14 12 17 17 C 1.38949 * 119.99723 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00112 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00092 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47415 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47400 * 119.99810 * 19 17 15 22 22 H 1.48504 * 109.47647 * 240.00162 * 19 17 15 23 23 C 1.33355 * 117.94870 * 179.74297 * 2 1 3 24 24 O 1.21286 * 118.24065 * 357.77287 * 23 2 1 25 25 H 1.09002 * 109.47391 * 89.99725 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99781 * 1 2 3 27 27 H 1.09004 * 109.47041 * 209.99908 * 1 2 3 28 28 H 1.09007 * 109.29982 * 319.39050 * 3 2 1 29 29 H 1.08998 * 109.30100 * 78.96801 * 3 2 1 30 30 H 1.09001 * 109.60011 * 69.00716 * 4 3 2 31 31 H 1.08998 * 109.60016 * 189.32593 * 4 3 2 32 32 H 1.08997 * 109.67426 * 187.26673 * 5 4 3 33 33 H 1.08998 * 109.67400 * 307.79925 * 5 4 3 34 34 H 0.97005 * 119.99795 * 0.02562 * 10 8 6 35 35 H 1.08997 * 109.47609 * 300.00573 * 11 10 8 36 36 H 1.09010 * 109.46884 * 60.00354 * 11 10 8 37 37 H 0.96997 * 120.00060 * 0.02562 * 14 12 11 38 38 H 0.97001 * 119.99586 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5949 1.1259 -0.4682 5 6 4.2493 -0.0014 0.3395 6 6 3.5838 -1.3240 -0.0487 7 1 3.8880 -1.5997 -1.0585 8 6 4.0131 -2.4017 0.9133 9 8 4.7749 -2.1376 1.8192 10 7 3.5503 -3.6591 0.7669 11 6 3.9681 -4.7068 1.7017 12 6 3.3136 -6.0098 1.3209 13 8 2.5716 -6.0586 0.3627 14 7 3.5528 -7.1210 2.0452 15 6 2.9578 -8.3064 1.6985 16 1 2.2978 -8.3500 0.8448 17 6 3.2040 -9.4518 2.4456 18 7 4.0067 -9.3987 3.4847 19 14 2.3928 -11.0669 1.9737 20 1 1.5409 -10.8614 0.7748 21 1 3.4390 -12.0761 1.6696 22 1 1.5541 -11.5477 3.1009 23 6 2.0900 -1.1780 0.0053 24 8 1.4158 -2.1852 0.0513 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5138 28 1 1.6270 1.9719 -0.6697 29 1 2.1431 1.6981 1.0097 30 1 3.6100 0.8727 -1.5283 31 1 4.1376 2.0573 -0.3070 32 1 5.3143 -0.0456 0.1117 33 1 4.1088 0.1812 1.4049 34 1 2.9413 -3.8704 0.0420 35 1 5.0516 -4.8186 1.6617 36 1 3.6683 -4.4319 2.7131 37 1 4.1459 -7.0819 2.8118 38 1 4.1782 -10.1983 4.0064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157076416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:02 Heat of formation + Delta-G solvation = -136.996435 kcal Electronic energy + Delta-G solvation = -22339.024036 eV Core-core repulsion = 18794.157210 eV Total energy + Delta-G solvation = -3544.866826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.11843 -40.62118 -39.77060 -37.64622 -36.26612 -35.28263 -35.04636 -33.39923 -31.27829 -29.27552 -28.05895 -26.73063 -25.40422 -23.18662 -21.83459 -21.39867 -20.13919 -19.72554 -18.91571 -17.80061 -17.65832 -17.36142 -16.95552 -16.62081 -16.51422 -16.20517 -15.69296 -15.47104 -15.19142 -14.92530 -14.51885 -14.34380 -13.98702 -13.66451 -13.57699 -13.51852 -13.22756 -12.94456 -12.90730 -12.47378 -12.33334 -12.24132 -12.12723 -11.85502 -11.60418 -11.15883 -10.79938 -10.59014 -10.21541 -10.10042 -9.75701 -8.53195 -6.03596 1.19710 1.33337 1.40778 1.51339 1.55749 1.87521 1.99292 2.10920 2.31398 3.07883 3.13226 3.40906 3.44861 3.73804 3.82909 4.10824 4.20606 4.23173 4.35952 4.37840 4.41045 4.49573 4.61967 4.68695 4.86505 4.94115 5.06052 5.09054 5.23498 5.34384 5.36429 5.42351 5.89381 6.29737 6.41306 6.48990 6.98554 7.01655 7.07522 7.40880 7.92726 8.64157 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.033769 B = 0.003389 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.964456 B = 8260.688994 C = 8835.367373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.600 5.600 3 C 0.101 3.899 4 C -0.128 4.128 5 C -0.100 4.100 6 C -0.118 4.118 7 H 0.151 0.849 8 C 0.523 3.477 9 O -0.569 6.569 10 N -0.698 5.698 11 C 0.119 3.881 12 C 0.430 3.570 13 O -0.623 6.623 14 N -0.558 5.558 15 C -0.339 4.339 16 H 0.083 0.917 17 C -0.010 4.010 18 N -0.916 5.916 19 Si 0.999 3.001 20 H -0.272 1.272 21 H -0.268 1.268 22 H -0.270 1.270 23 C 0.511 3.489 24 O -0.581 6.581 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.051 0.949 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.414 0.586 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.399 0.601 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 24.350 -6.894 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.331 5.331 3 C -0.020 4.020 4 C -0.165 4.165 5 C -0.138 4.138 6 C -0.141 4.141 7 H 0.168 0.832 8 C 0.309 3.691 9 O -0.450 6.450 10 N -0.351 5.351 11 C -0.008 4.008 12 C 0.217 3.783 13 O -0.511 6.511 14 N -0.194 5.194 15 C -0.468 4.468 16 H 0.101 0.899 17 C -0.211 4.211 18 N -0.556 5.556 19 Si 0.822 3.178 20 H -0.196 1.196 21 H -0.193 1.193 22 H -0.195 1.195 23 C 0.299 3.701 24 O -0.461 6.461 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.254 0.746 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.233 0.767 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.879 23.836 -6.716 24.780 hybrid contribution -0.359 -1.337 0.169 1.394 sum -1.238 22.499 -6.547 23.465 Atomic orbital electron populations 1.21838 0.78532 1.03614 1.02879 1.47320 1.08229 1.06220 1.71380 1.21859 0.93802 0.82841 1.03457 1.21953 0.94048 0.99963 1.00535 1.21554 1.01058 0.89971 1.01266 1.21532 0.92880 0.97176 1.02532 0.83164 1.20460 0.80167 0.82969 0.85477 1.90664 1.37460 1.82240 1.34586 1.45906 1.48414 1.08111 1.32707 1.20818 1.00247 0.85475 0.94306 1.20454 0.86068 0.86197 0.85570 1.90497 1.42688 1.86041 1.31867 1.41822 1.42315 1.07415 1.27852 1.19774 1.26713 0.86429 1.13890 0.89871 1.26148 0.97069 1.02717 0.95143 1.69688 1.36108 1.31842 1.17930 0.84793 0.78100 0.76598 0.78341 1.19643 1.19290 1.19476 1.19872 0.89955 0.83750 0.76563 1.90804 1.66611 1.37186 1.51528 0.91392 0.87907 0.93053 0.87230 0.90423 0.89757 0.86072 0.88859 0.91478 0.74608 0.88022 0.89327 0.76659 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 10.25 127.77 1.31 2.54 16 2 N -0.60 -11.23 3.21 -851.57 -2.73 -13.96 16 3 C 0.10 0.93 6.32 86.49 0.55 1.48 16 4 C -0.13 -1.01 6.02 30.68 0.18 -0.83 16 5 C -0.10 -1.64 4.78 30.73 0.15 -1.50 16 6 C -0.12 -2.80 2.79 -12.42 -0.03 -2.83 16 7 H 0.15 2.89 8.14 -2.38 -0.02 2.87 16 8 C 0.52 17.63 7.05 87.66 0.62 18.25 16 9 O -0.57 -21.33 15.79 -3.01 -0.05 -21.37 16 10 N -0.70 -27.04 5.01 -466.79 -2.34 -29.38 16 11 C 0.12 4.88 6.15 85.63 0.53 5.41 16 12 C 0.43 21.83 7.85 87.66 0.69 22.52 16 13 O -0.62 -35.84 15.24 -3.07 -0.05 -35.88 16 14 N -0.56 -29.84 5.29 -306.99 -1.62 -31.47 16 15 C -0.34 -19.64 9.68 84.04 0.81 -18.83 16 16 H 0.08 5.11 7.16 -2.91 -0.02 5.09 16 17 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 18 N -0.92 -50.05 13.05 21.66 0.28 -49.76 16 19 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 C 0.51 13.86 7.03 87.72 0.62 14.48 16 24 O -0.58 -21.61 13.92 -3.05 -0.04 -21.65 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.00 8.01 -2.39 -0.02 0.98 16 27 H 0.05 1.22 7.13 -2.38 -0.02 1.20 16 28 H 0.11 0.40 8.10 -2.38 -0.02 0.38 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 31 H 0.12 0.31 8.14 -2.39 -0.02 0.30 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.33 7.73 -2.39 -0.02 1.31 16 34 H 0.41 17.32 6.08 -92.70 -0.56 16.75 16 35 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 37 H 0.40 20.31 7.90 -92.71 -0.73 19.58 16 38 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -78.03 321.34 1.17 -76.86 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.19 Total: 40.70 kcal Atomic # 6 Polarization: 34.73 SS G_CDS: 5.88 Total: 40.61 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -6.41 Total: -124.57 kcal Atomic # 8 Polarization: -78.78 SS G_CDS: -0.14 Total: -78.91 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -78.03 1.17 -76.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157076416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.137 kcal (2) G-P(sol) polarization free energy of solvation -78.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds