Wall clock time and date at job start Tue Mar 31 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99711 * 2 1 4 4 C 1.50703 * 109.47286 * 180.02562 * 3 2 1 5 5 N 1.30016 * 127.33332 * 270.00272 * 4 3 2 6 6 O 1.20656 * 112.30041 * 179.97438 * 5 4 3 7 7 C 1.33499 * 113.15795 * 359.75713 * 6 5 4 8 8 C 1.37362 * 106.33709 * 0.38708 * 7 6 5 9 9 C 1.47402 * 128.56305 * 179.91214 * 8 7 6 10 10 O 1.21603 * 120.00063 * 179.67612 * 9 8 7 11 11 N 1.34777 * 119.99679 * 359.67301 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.46748 * 180.02562 * 14 13 12 16 16 C 1.36939 * 119.99838 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99927 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99976 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00037 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99973 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46933 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46921 * 120.00143 * 20 18 16 23 23 H 1.48498 * 109.46946 * 240.00460 * 20 18 16 24 24 H 1.08993 * 109.47395 * 60.00101 * 1 2 3 25 25 H 1.08996 * 109.46537 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46719 * 299.99862 * 1 2 3 27 27 H 1.09001 * 109.47098 * 60.00302 * 3 2 1 28 28 H 1.09004 * 109.47229 * 300.00272 * 3 2 1 29 29 H 1.07993 * 126.83299 * 180.30026 * 7 6 5 30 30 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 32 32 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 33 33 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 34 34 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 35 35 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 36 36 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 37 37 H 0.96992 * 119.99973 * 359.97438 * 15 14 13 38 38 H 0.97003 * 120.00466 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2990 1.1242 1.0328 6 8 5.4605 1.0319 0.7194 7 6 5.6476 1.0117 -0.6023 8 6 4.4014 1.1159 -1.1706 9 6 4.0427 1.1436 -2.6001 10 8 2.8767 1.2355 -2.9327 11 7 5.0072 1.0671 -3.5383 12 6 4.6503 1.0885 -4.9590 13 6 5.9204 0.9822 -5.8056 14 6 5.5475 1.0040 -7.2893 15 7 6.7636 0.9016 -8.0999 16 6 6.6775 0.9015 -9.4666 17 1 5.7131 0.9772 -9.9469 18 6 7.8297 0.8050 -10.2346 19 7 9.0050 0.7132 -9.6494 20 14 7.7122 0.8041 -12.0990 21 1 6.2883 0.9164 -12.5052 22 1 8.4742 1.9565 -12.6435 23 1 8.2806 -0.4608 -12.6301 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 6.5911 0.9310 -1.1214 30 1 5.9373 0.9934 -3.2730 31 1 3.9939 0.2471 -5.1816 32 1 4.1364 2.0214 -5.1906 33 1 6.5767 1.8235 -5.5831 34 1 6.4343 0.0492 -5.5742 35 1 4.8914 0.1625 -7.5115 36 1 5.0334 1.9368 -7.5212 37 1 7.6297 0.8347 -7.6685 38 1 9.8102 0.6462 -10.1860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170960539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:30 Heat of formation + Delta-G solvation = -10.321404 kcal Electronic energy + Delta-G solvation = -21144.563590 eV Core-core repulsion = 17605.189805 eV Total energy + Delta-G solvation = -3539.373785 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.32548 -39.72068 -38.18965 -36.13170 -34.48130 -34.33499 -32.72094 -31.77309 -29.63309 -28.62810 -26.25228 -25.77362 -24.34072 -22.56686 -21.73939 -21.25472 -20.57215 -18.62378 -18.16061 -17.25562 -16.85531 -16.59525 -16.25128 -15.94869 -15.72363 -15.44867 -14.76473 -14.38507 -14.37424 -13.78902 -13.32239 -13.08361 -12.85559 -12.71005 -12.54293 -11.87814 -11.83913 -11.69043 -11.03709 -10.97697 -10.83745 -10.68913 -10.54550 -10.33925 -10.13501 -10.05834 -9.97010 -9.74825 -9.21080 -8.91899 -6.97266 -5.80737 -3.09759 0.70569 1.27536 2.52143 2.91173 2.99345 3.37216 3.41538 3.47472 3.49592 3.75596 4.06324 4.45242 4.55795 4.61574 4.84221 4.89324 5.03568 5.07553 5.11210 5.23103 5.23504 5.38983 5.44097 5.54059 5.54424 5.88282 5.98581 6.12298 6.26323 6.28733 6.72967 6.73261 6.77544 7.25496 7.67687 7.77123 7.96020 8.38220 9.49573 10.06072 10.40612 11.42328 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.031553 B = 0.002480 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.178340 B =11287.549205 C =12047.711658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.142 3.858 4 C 0.064 3.936 5 N -0.339 5.339 6 O 0.107 5.893 7 C -0.006 4.006 8 C -0.236 4.236 9 C 0.592 3.408 10 O -0.526 6.526 11 N -0.719 5.719 12 C 0.124 3.876 13 C -0.138 4.138 14 C 0.156 3.844 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.072 0.928 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.230 0.770 30 H 0.399 0.601 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.384 0.616 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 1.316 22.410 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.065 3.935 4 C -0.099 4.099 5 N -0.044 5.044 6 O 0.043 5.957 7 C -0.088 4.088 8 C -0.244 4.244 9 C 0.378 3.622 10 O -0.403 6.403 11 N -0.370 5.370 12 C 0.000 4.000 13 C -0.176 4.176 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.371 4.371 17 H 0.090 0.910 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.247 0.753 30 H 0.234 0.766 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.217 0.783 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.388 1.235 23.287 25.952 hybrid contribution 0.678 0.116 -1.651 1.789 sum -10.709 1.350 21.636 24.179 Atomic orbital electron populations 1.22777 0.79954 1.03191 1.00326 1.87910 1.20404 1.26233 1.95534 1.20572 0.84114 0.86247 1.02614 1.24367 0.97479 1.01293 0.86718 1.73684 0.89515 1.17671 1.23518 1.84598 1.21617 1.66211 1.23240 1.26487 1.00391 0.98104 0.83863 1.22381 0.92792 1.13472 0.95752 1.16788 0.85586 0.76946 0.82924 1.90802 1.18340 1.49279 1.81842 1.45887 1.09491 1.74584 1.07016 1.21434 0.98136 1.02829 0.77567 1.21959 0.96278 1.02787 0.96624 1.20517 0.90931 0.98240 0.87498 1.42341 1.03300 1.89070 1.03122 1.19288 0.93052 1.42260 0.82489 0.91023 1.24758 0.95287 1.02913 0.98120 1.69662 0.96994 1.57483 1.34163 0.86095 0.77270 0.77207 0.85507 1.20493 1.21828 1.21814 0.93328 0.89243 0.93931 0.91354 0.89246 0.75331 0.76642 0.90953 0.90965 0.91175 0.91169 0.95980 0.95999 0.78302 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.63 10.69 -35.23 -0.38 -5.00 16 3 C 0.14 1.54 6.20 36.01 0.22 1.76 16 4 C 0.06 0.75 7.21 -79.77 -0.58 0.18 16 5 N -0.34 -3.86 12.01 34.78 0.42 -3.44 16 6 O 0.11 0.97 11.06 18.64 0.21 1.17 16 7 C -0.01 -0.04 11.85 30.41 0.36 0.32 16 8 C -0.24 -2.49 6.47 -102.89 -0.67 -3.15 16 9 C 0.59 7.33 7.81 -12.53 -0.10 7.23 16 10 O -0.53 -8.31 15.70 5.27 0.08 -8.22 16 11 N -0.72 -7.48 5.55 -61.39 -0.34 -7.82 16 12 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 13 C -0.14 -1.95 5.44 -26.73 -0.15 -2.09 16 14 C 0.16 2.99 6.26 -4.04 -0.03 2.97 16 15 N -0.73 -18.22 5.60 -59.90 -0.34 -18.56 16 16 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 20 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.99 7.11 -51.93 -0.37 0.62 16 29 H 0.23 0.45 7.68 -52.49 -0.40 0.05 16 30 H 0.40 2.88 7.66 -40.82 -0.31 2.57 16 31 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.38 9.87 7.67 -40.82 -0.31 9.56 16 38 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -35.29 335.63 -4.84 -40.13 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.17 Total: 3.92 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.08 Total: 2.76 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.47 Total: -57.03 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.29 -4.84 -40.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170960539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.812 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds