Wall clock time and date at job start Tue Mar 31 2020 03:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99711 * 2 1 4 4 C 1.50703 * 109.47286 * 180.02562 * 3 2 1 5 5 N 1.30016 * 127.33332 * 270.00272 * 4 3 2 6 6 O 1.20656 * 112.30041 * 179.97438 * 5 4 3 7 7 C 1.33499 * 113.15795 * 359.75713 * 6 5 4 8 8 C 1.37362 * 106.33709 * 0.38708 * 7 6 5 9 9 C 1.47402 * 128.56305 * 179.91214 * 8 7 6 10 10 O 1.21603 * 120.00063 * 179.67612 * 9 8 7 11 11 N 1.34777 * 119.99679 * 359.67301 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.46748 * 180.02562 * 14 13 12 16 16 C 1.36939 * 119.99838 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99927 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99976 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00037 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99973 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46933 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46921 * 120.00143 * 20 18 16 23 23 H 1.48498 * 109.46946 * 240.00460 * 20 18 16 24 24 H 1.08993 * 109.47395 * 60.00101 * 1 2 3 25 25 H 1.08996 * 109.46537 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46719 * 299.99862 * 1 2 3 27 27 H 1.09001 * 109.47098 * 60.00302 * 3 2 1 28 28 H 1.09004 * 109.47229 * 300.00272 * 3 2 1 29 29 H 1.07993 * 126.83299 * 180.30026 * 7 6 5 30 30 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 32 32 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 33 33 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 34 34 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 35 35 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 36 36 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 37 37 H 0.96992 * 119.99973 * 359.97438 * 15 14 13 38 38 H 0.97003 * 120.00466 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2990 1.1242 1.0328 6 8 5.4605 1.0319 0.7194 7 6 5.6476 1.0117 -0.6023 8 6 4.4014 1.1159 -1.1706 9 6 4.0427 1.1436 -2.6001 10 8 2.8767 1.2355 -2.9327 11 7 5.0072 1.0671 -3.5383 12 6 4.6503 1.0885 -4.9590 13 6 5.9204 0.9822 -5.8056 14 6 5.5475 1.0040 -7.2893 15 7 6.7636 0.9016 -8.0999 16 6 6.6775 0.9015 -9.4666 17 1 5.7131 0.9772 -9.9469 18 6 7.8297 0.8050 -10.2346 19 7 9.0050 0.7132 -9.6494 20 14 7.7122 0.8041 -12.0990 21 1 6.2883 0.9164 -12.5052 22 1 8.4742 1.9565 -12.6435 23 1 8.2806 -0.4608 -12.6301 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 6.5911 0.9310 -1.1214 30 1 5.9373 0.9934 -3.2730 31 1 3.9939 0.2471 -5.1816 32 1 4.1364 2.0214 -5.1906 33 1 6.5767 1.8235 -5.5831 34 1 6.4343 0.0492 -5.5742 35 1 4.8914 0.1625 -7.5115 36 1 5.0334 1.9368 -7.5212 37 1 7.6297 0.8347 -7.6685 38 1 9.8102 0.6462 -10.1860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170960539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:29 Heat of formation + Delta-G solvation = -37.916315 kcal Electronic energy + Delta-G solvation = -21145.760195 eV Core-core repulsion = 17605.189805 eV Total energy + Delta-G solvation = -3540.570390 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.09258 -40.69120 -38.98538 -37.50580 -35.95917 -35.12613 -33.95690 -33.08326 -31.18361 -29.40618 -27.39471 -26.72773 -25.63051 -24.08625 -22.67444 -22.35392 -21.55825 -19.53689 -19.01097 -18.92889 -17.85865 -17.36710 -17.24125 -16.81493 -16.79792 -16.54726 -16.18484 -15.56202 -15.44832 -15.28094 -14.85180 -14.50370 -13.87950 -13.60369 -13.40156 -13.29362 -12.84302 -12.62912 -12.57687 -12.51121 -12.40606 -12.03949 -12.02870 -11.79262 -11.34775 -11.29171 -10.94299 -10.88144 -10.77973 -10.16357 -9.00148 -7.95986 -5.24495 0.02427 0.48046 1.49148 1.49210 1.59531 1.78943 2.05139 2.19767 2.56675 2.64417 3.01778 3.34748 3.38395 3.71088 3.77259 3.88566 4.10727 4.11941 4.24897 4.30882 4.45055 4.47221 4.49789 4.60728 4.64170 4.75483 4.76409 4.78852 4.91034 5.25680 5.34702 5.37423 5.50733 5.99975 6.27430 6.43039 7.06111 7.09889 7.34104 8.09223 8.32710 9.27670 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.031553 B = 0.002480 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.178340 B =11287.549205 C =12047.711658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.141 3.859 4 C 0.043 3.957 5 N -0.358 5.358 6 O 0.111 5.889 7 C 0.036 3.964 8 C -0.268 4.268 9 C 0.594 3.406 10 O -0.569 6.569 11 N -0.704 5.704 12 C 0.135 3.865 13 C -0.118 4.118 14 C 0.151 3.849 15 N -0.747 5.747 16 C -0.247 4.247 17 H 0.074 0.926 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.972 3.028 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.292 1.292 24 H 0.048 0.952 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.283 0.717 30 H 0.418 0.582 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.376 0.624 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.840 1.326 22.923 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.064 3.936 4 C -0.120 4.120 5 N -0.063 5.063 6 O 0.048 5.952 7 C -0.045 4.045 8 C -0.276 4.276 9 C 0.381 3.619 10 O -0.449 6.449 11 N -0.356 5.356 12 C 0.011 3.989 13 C -0.157 4.157 14 C 0.024 3.976 15 N -0.390 5.390 16 C -0.379 4.379 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.801 3.199 21 H -0.192 1.192 22 H -0.219 1.219 23 H -0.219 1.219 24 H 0.066 0.934 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.299 0.701 30 H 0.255 0.745 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.209 0.791 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.886 1.247 23.831 26.229 hybrid contribution 0.499 0.109 -1.760 1.833 sum -10.386 1.356 22.071 24.430 Atomic orbital electron populations 1.22968 0.78346 1.04232 1.01228 1.87858 1.22342 1.27069 1.95700 1.20597 0.84225 0.85947 1.02842 1.24637 0.98061 1.01815 0.87446 1.73684 0.90199 1.18551 1.23851 1.84577 1.20715 1.65609 1.24273 1.27374 1.00911 0.93605 0.82654 1.22221 0.94191 1.16662 0.94546 1.16992 0.85107 0.76031 0.83766 1.90781 1.20137 1.51389 1.82575 1.45637 1.10292 1.73856 1.05817 1.21149 0.96990 1.02291 0.78501 1.21707 0.96991 1.03596 0.93361 1.20689 0.88974 0.97933 0.90032 1.42544 1.04715 1.88960 1.02768 1.19667 0.93115 1.40905 0.84169 0.90785 1.25555 0.95126 1.03594 1.02457 1.69797 0.97461 1.59068 1.35526 0.85089 0.77665 0.76744 0.80364 1.19209 1.21920 1.21943 0.93370 0.88189 0.92064 0.89840 0.90196 0.70135 0.74476 0.91784 0.91487 0.90258 0.90423 0.96090 0.95975 0.79134 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -10.06 10.69 -148.98 -1.59 -11.65 16 3 C 0.14 3.11 6.20 71.24 0.44 3.55 16 4 C 0.04 0.98 7.21 45.16 0.33 1.30 16 5 N -0.36 -7.75 12.01 -44.78 -0.54 -8.28 16 6 O 0.11 1.75 11.06 76.93 0.85 2.60 16 7 C 0.04 0.38 11.85 67.61 0.80 1.18 16 8 C -0.27 -5.23 6.47 -18.74 -0.12 -5.35 16 9 C 0.59 14.05 7.81 86.66 0.68 14.72 16 10 O -0.57 -18.12 15.70 -4.04 -0.06 -18.19 16 11 N -0.70 -13.07 5.55 -466.39 -2.59 -15.65 16 12 C 0.13 3.15 5.67 86.38 0.49 3.64 16 13 C -0.12 -3.10 5.44 30.59 0.17 -2.94 16 14 C 0.15 5.61 6.26 86.38 0.54 6.15 16 15 N -0.75 -36.64 5.60 -343.44 -1.92 -38.57 16 16 C -0.25 -13.60 9.99 84.03 0.84 -12.76 16 17 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 18 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 19 N -0.97 -57.93 13.06 21.65 0.28 -57.64 16 20 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.86 7.11 -2.39 -0.02 1.84 16 29 H 0.28 -0.48 7.68 -2.91 -0.02 -0.50 16 30 H 0.42 4.52 7.66 -92.71 -0.71 3.81 16 31 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.02 0.83 8.14 -2.38 -0.02 0.82 16 37 H 0.38 19.24 7.67 -92.71 -0.71 18.53 16 38 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -77.03 335.63 2.00 -75.02 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -0.33 Total: 17.42 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 5.88 Total: 7.42 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -4.77 Total: -120.15 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.80 Total: -27.24 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -77.03 2.00 -75.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170960539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.107 kcal (2) G-P(sol) polarization free energy of solvation -77.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds