Wall clock time and date at job start Tue Mar 31 2020 02:22:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86808 * 119.99905 * 2 1
4 4 H 1.48502 * 109.46685 * 239.99906 * 3 2 1
5 5 H 1.48502 * 109.46942 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47020 * 119.99614 * 3 2 1
7 7 C 1.38810 * 120.00282 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00290 * 179.97438 * 7 2 1
9 9 N 1.36937 * 119.99679 * 0.02562 * 7 2 1
10 10 C 1.46505 * 119.99660 * 179.97438 * 9 7 2
11 11 C 1.53003 * 109.47060 * 179.97438 * 10 9 7
12 12 C 1.52996 * 109.47301 * 179.97438 * 11 10 9
13 13 N 1.46498 * 109.47059 * 179.97438 * 12 11 10
14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 11
15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 12
16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 12
17 17 C 1.52990 * 109.47398 * 180.02562 * 16 14 13
18 18 H 1.09001 * 110.54876 * 307.85186 * 17 16 14
19 19 C 1.54229 * 110.60926 * 184.99857 * 17 16 14
20 20 C 1.51317 * 103.55982 * 241.48838 * 19 17 16
21 21 O 1.21227 * 125.39733 * 180.02562 * 20 19 17
22 22 N 1.33875 * 109.20406 * 359.97438 * 20 19 17
23 23 C 1.33879 * 114.47677 * 0.02562 * 22 20 19
24 24 O 1.21228 * 125.39438 * 180.02562 * 23 22 20
25 25 H 0.96997 * 120.00383 * 0.02562 * 1 2 3
26 26 H 0.96995 * 120.00437 * 359.97438 * 9 7 2
27 27 H 1.08990 * 109.47414 * 59.99655 * 10 9 7
28 28 H 1.09002 * 109.47037 * 299.98966 * 10 9 7
29 29 H 1.09004 * 109.47038 * 59.99597 * 11 10 9
30 30 H 1.09000 * 109.46939 * 300.00250 * 11 10 9
31 31 H 1.09004 * 109.47066 * 60.00027 * 12 11 10
32 32 H 1.08994 * 109.46974 * 300.00175 * 12 11 10
33 33 H 0.97001 * 120.00384 * 0.02562 * 13 12 11
34 34 H 1.08998 * 109.46954 * 300.00581 * 16 14 13
35 35 H 1.09002 * 109.46946 * 59.99717 * 16 14 13
36 36 H 1.09007 * 110.60493 * 0.02562 * 19 17 16
37 37 H 1.09000 * 110.60508 * 122.96168 * 19 17 16
38 38 H 0.97000 * 122.76033 * 179.97438 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2851 2.7465 -0.0006
6 1 3.1038 1.6965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0001
9 7 1.3256 -2.3880 0.0005
10 6 2.0582 -3.6567 0.0005
11 6 1.0640 -4.8197 0.0012
12 6 1.8290 -6.1447 0.0005
13 7 0.8770 -7.2582 0.0018
14 6 1.3262 -8.5289 -0.0042
15 8 2.5186 -8.7505 -0.0054
16 6 0.3470 -9.6744 -0.0092
17 6 1.1120 -10.9993 -0.0148
18 1 1.8458 -11.0140 -0.8207
19 6 0.1380 -12.1880 -0.1458
20 6 0.3581 -12.9694 1.1311
21 8 -0.2160 -13.9926 1.4360
22 7 1.2882 -12.3522 1.8703
23 6 1.7804 -11.2343 1.3222
24 8 2.6278 -10.5233 1.8183
25 1 -0.4850 0.8400 -0.0004
26 1 0.3556 -2.3881 0.0005
27 1 2.6848 -3.7145 0.8904
28 1 2.6847 -3.7145 -0.8896
29 1 0.4369 -4.7622 -0.8886
30 1 0.4376 -4.7618 0.8914
31 1 2.4563 -6.2025 0.8901
32 1 2.4549 -6.2023 -0.8898
33 1 -0.0767 -7.0810 0.0024
34 1 -0.2795 -9.6207 0.8811
35 1 -0.2799 -9.6125 -0.8988
36 1 -0.8916 -11.8353 -0.2075
37 1 0.3889 -12.7953 -1.0155
38 1 1.5809 -12.6871 2.7323
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001177595744.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:22:19
Heat of formation + Delta-G solvation = -101.061542 kcal
Electronic energy + Delta-G solvation = -21177.734301 eV
Core-core repulsion = 17634.425728 eV
Total energy + Delta-G solvation = -3543.308572 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.136 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-42.26177 -39.75244 -38.82978 -36.32418 -36.03752 -34.35957 -33.98751 -32.01457
-30.01552 -28.82048 -25.90544 -24.80208 -22.70424 -22.19570 -21.36999 -21.17516
-20.12925 -18.32690 -17.59073 -17.08240 -16.73287 -16.59739 -15.97316 -15.84182
-15.30817 -14.84670 -14.58591 -14.47100 -14.07995 -14.06123 -13.51115 -13.25914
-13.17595 -12.95061 -12.68255 -12.22761 -11.83211 -11.63497 -11.09591 -10.96292
-10.91328 -10.79949 -10.70619 -10.61675 -10.35755 -10.13273 -9.88426 -9.69521
-9.04677 -8.88263 -6.94511 -5.78006 -3.06943 1.09084 2.29588 2.34238
2.56444 3.01073 3.44336 3.48280 3.49593 3.58441 3.73099 3.87891
4.13265 4.55010 4.58684 4.74810 4.79636 4.96708 5.06743 5.14898
5.29823 5.31996 5.55600 5.56774 5.62501 5.99030 6.06421 6.18148
6.20027 6.31380 6.44599 6.78319 6.82551 6.87687 7.42593 7.46746
7.69125 8.16160 8.41084 9.52095 10.09100 10.43822 11.44959
Molecular weight = 283.14amu
Principal moments of inertia in cm(-1)
A = 0.054659 B = 0.002218 C = 0.002182
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 512.148024 B =12620.829828 C =12827.176459
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.015 4.015
3 Si 0.909 3.091
4 H -0.285 1.285
5 H -0.291 1.291
6 H -0.285 1.285
7 C -0.240 4.240
8 H 0.071 0.929
9 N -0.734 5.734
10 C 0.156 3.844
11 C -0.137 4.137
12 C 0.123 3.877
13 N -0.729 5.729
14 C 0.502 3.498
15 O -0.518 6.518
16 C -0.129 4.129
17 C -0.110 4.110
18 H 0.135 0.865
19 C -0.156 4.156
20 C 0.531 3.469
21 O -0.489 6.489
22 N -0.685 5.685
23 C 0.524 3.476
24 O -0.443 6.443
25 H 0.256 0.744
26 H 0.383 0.617
27 H 0.022 0.978
28 H 0.022 0.978
29 H 0.068 0.932
30 H 0.068 0.932
31 H 0.068 0.932
32 H 0.068 0.932
33 H 0.400 0.600
34 H 0.098 0.902
35 H 0.114 0.886
36 H 0.125 0.875
37 H 0.125 0.875
38 H 0.414 0.586
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.097 -26.821 -1.165 27.024
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.584 5.584
2 C -0.211 4.211
3 Si 0.740 3.260
4 H -0.212 1.212
5 H -0.217 1.217
6 H -0.212 1.212
7 C -0.372 4.372
8 H 0.089 0.911
9 N -0.378 5.378
10 C 0.028 3.972
11 C -0.175 4.175
12 C 0.000 4.000
13 N -0.381 5.381
14 C 0.286 3.714
15 O -0.393 6.393
16 C -0.169 4.169
17 C -0.131 4.131
18 H 0.152 0.848
19 C -0.195 4.195
20 C 0.319 3.681
21 O -0.361 6.361
22 N -0.351 5.351
23 C 0.309 3.691
24 O -0.310 6.310
25 H 0.065 0.935
26 H 0.217 0.783
27 H 0.039 0.961
28 H 0.040 0.960
29 H 0.087 0.913
30 H 0.086 0.914
31 H 0.086 0.914
32 H 0.086 0.914
33 H 0.234 0.766
34 H 0.117 0.883
35 H 0.132 0.868
36 H 0.143 0.857
37 H 0.143 0.857
38 H 0.254 0.746
Dipole moment (debyes) X Y Z Total
from point charges -1.956 -26.914 -0.890 26.999
hybrid contribution -0.223 0.905 0.478 1.048
sum -2.179 -26.009 -0.411 26.103
Atomic orbital electron populations
1.69645 1.05133 1.25809 1.57803 1.24756 0.95570 0.97770 1.02991
0.86235 0.78503 0.83359 0.77908 1.21219 1.21671 1.21216 1.19205
0.91088 0.84131 1.42732 0.91136 1.42332 1.05848 0.99997 1.89640
1.20525 0.93291 0.85189 0.98226 1.21941 0.99559 0.93397 1.02642
1.21347 0.91703 0.84483 1.02502 1.46029 1.10657 1.05756 1.75638
1.20364 0.89785 0.83981 0.77241 1.90801 1.16314 1.84417 1.47729
1.21613 0.98294 0.91146 1.05867 1.21838 0.98700 0.94788 0.97808
0.84754 1.22619 1.02976 0.96464 0.97468 1.20770 0.77336 0.83816
0.86221 1.90827 1.48337 1.22226 1.74687 1.44879 1.39626 1.26780
1.23859 1.20704 0.81546 0.79376 0.87465 1.90915 1.27468 1.46648
1.65972 0.93454 0.78315 0.96051 0.96047 0.91323 0.91352 0.91356
0.91354 0.76638 0.88324 0.86751 0.85737 0.85673 0.74623
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -28.25 13.06 55.49 0.72 -27.52 16
2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16
3 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16
4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16
8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16
9 N -0.73 -18.63 5.60 -59.91 -0.34 -18.96 16
10 C 0.16 3.09 6.26 -4.04 -0.03 3.07 16
11 C -0.14 -2.03 5.44 -26.73 -0.15 -2.18 16
12 C 0.12 1.62 5.67 -4.04 -0.02 1.60 16
13 N -0.73 -7.43 5.56 -60.30 -0.33 -7.76 16
14 C 0.50 5.29 7.52 -10.98 -0.08 5.21 16
15 O -0.52 -7.77 13.97 -15.63 -0.22 -7.99 16
16 C -0.13 -0.67 5.01 -27.89 -0.14 -0.81 16
17 C -0.11 -0.60 2.68 -90.83 -0.24 -0.84 16
18 H 0.13 0.75 7.89 -51.93 -0.41 0.34 16
19 C -0.16 -0.45 6.67 -26.94 -0.18 -0.63 16
20 C 0.53 3.37 8.55 -11.08 -0.09 3.28 16
21 O -0.49 -4.83 18.02 5.60 0.10 -4.73 16
22 N -0.68 -4.47 5.48 -11.39 -0.06 -4.53 16
23 C 0.52 4.55 7.72 -11.08 -0.09 4.47 16
24 O -0.44 -6.04 15.91 -15.58 -0.25 -6.28 16
25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
26 H 0.38 10.07 7.67 -40.82 -0.31 9.76 16
27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16
31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
33 H 0.40 2.94 8.47 -40.82 -0.35 2.60 16
34 H 0.10 0.39 8.12 -51.93 -0.42 -0.04 16
35 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16
36 H 0.12 0.11 7.74 -51.92 -0.40 -0.29 16
37 H 0.13 0.15 8.14 -51.93 -0.42 -0.28 16
38 H 0.41 2.30 8.96 -40.82 -0.37 1.93 16
LS Contribution 329.61 15.07 4.97 4.97
Total: -1.00 -37.95 329.61 -6.88 -44.83
By element:
Atomic # 1 Polarization: 10.04 SS G_CDS: -5.19 Total: 4.85 kcal
Atomic # 6 Polarization: 6.94 SS G_CDS: -1.27 Total: 5.67 kcal
Atomic # 7 Polarization: -58.77 SS G_CDS: -0.01 Total: -58.78 kcal
Atomic # 8 Polarization: -18.63 SS G_CDS: -0.37 Total: -19.00 kcal
Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -37.95 -6.88 -44.83 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001177595744.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.232 kcal
(2) G-P(sol) polarization free energy of solvation -37.948 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.180 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.830 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds