Wall clock time and date at job start Tue Mar 31 2020 02:22:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86808 * 119.99905 * 2 1
4 4 H 1.48502 * 109.46685 * 239.99906 * 3 2 1
5 5 H 1.48502 * 109.46942 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47020 * 119.99614 * 3 2 1
7 7 C 1.38810 * 120.00282 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00290 * 179.97438 * 7 2 1
9 9 N 1.36937 * 119.99679 * 0.02562 * 7 2 1
10 10 C 1.46505 * 119.99660 * 179.97438 * 9 7 2
11 11 C 1.53003 * 109.47060 * 179.97438 * 10 9 7
12 12 C 1.52996 * 109.47301 * 179.97438 * 11 10 9
13 13 N 1.46498 * 109.47059 * 179.97438 * 12 11 10
14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 11
15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 12
16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 12
17 17 C 1.52990 * 109.47398 * 180.02562 * 16 14 13
18 18 H 1.09001 * 110.54876 * 307.85186 * 17 16 14
19 19 C 1.54229 * 110.60926 * 184.99857 * 17 16 14
20 20 C 1.51317 * 103.55982 * 241.48838 * 19 17 16
21 21 O 1.21227 * 125.39733 * 180.02562 * 20 19 17
22 22 N 1.33875 * 109.20406 * 359.97438 * 20 19 17
23 23 C 1.33879 * 114.47677 * 0.02562 * 22 20 19
24 24 O 1.21228 * 125.39438 * 180.02562 * 23 22 20
25 25 H 0.96997 * 120.00383 * 0.02562 * 1 2 3
26 26 H 0.96995 * 120.00437 * 359.97438 * 9 7 2
27 27 H 1.08990 * 109.47414 * 59.99655 * 10 9 7
28 28 H 1.09002 * 109.47037 * 299.98966 * 10 9 7
29 29 H 1.09004 * 109.47038 * 59.99597 * 11 10 9
30 30 H 1.09000 * 109.46939 * 300.00250 * 11 10 9
31 31 H 1.09004 * 109.47066 * 60.00027 * 12 11 10
32 32 H 1.08994 * 109.46974 * 300.00175 * 12 11 10
33 33 H 0.97001 * 120.00384 * 0.02562 * 13 12 11
34 34 H 1.08998 * 109.46954 * 300.00581 * 16 14 13
35 35 H 1.09002 * 109.46946 * 59.99717 * 16 14 13
36 36 H 1.09007 * 110.60493 * 0.02562 * 19 17 16
37 37 H 1.09000 * 110.60508 * 122.96168 * 19 17 16
38 38 H 0.97000 * 122.76033 * 179.97438 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2851 2.7465 -0.0006
6 1 3.1038 1.6965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0001
9 7 1.3256 -2.3880 0.0005
10 6 2.0582 -3.6567 0.0005
11 6 1.0640 -4.8197 0.0012
12 6 1.8290 -6.1447 0.0005
13 7 0.8770 -7.2582 0.0018
14 6 1.3262 -8.5289 -0.0042
15 8 2.5186 -8.7505 -0.0054
16 6 0.3470 -9.6744 -0.0092
17 6 1.1120 -10.9993 -0.0148
18 1 1.8458 -11.0140 -0.8207
19 6 0.1380 -12.1880 -0.1458
20 6 0.3581 -12.9694 1.1311
21 8 -0.2160 -13.9926 1.4360
22 7 1.2882 -12.3522 1.8703
23 6 1.7804 -11.2343 1.3222
24 8 2.6278 -10.5233 1.8183
25 1 -0.4850 0.8400 -0.0004
26 1 0.3556 -2.3881 0.0005
27 1 2.6848 -3.7145 0.8904
28 1 2.6847 -3.7145 -0.8896
29 1 0.4369 -4.7622 -0.8886
30 1 0.4376 -4.7618 0.8914
31 1 2.4563 -6.2025 0.8901
32 1 2.4549 -6.2023 -0.8898
33 1 -0.0767 -7.0810 0.0024
34 1 -0.2795 -9.6207 0.8811
35 1 -0.2799 -9.6125 -0.8988
36 1 -0.8916 -11.8353 -0.2075
37 1 0.3889 -12.7953 -1.0155
38 1 1.5809 -12.6871 2.7323
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001177595744.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:22:19
Heat of formation + Delta-G solvation = -132.100637 kcal
Electronic energy + Delta-G solvation = -21179.080257 eV
Core-core repulsion = 17634.425728 eV
Total energy + Delta-G solvation = -3544.654529 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 283.136 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.82349 -40.57007 -39.55598 -37.50432 -36.94603 -35.84695 -34.52105 -33.70631
-31.43610 -29.58363 -27.05282 -25.94600 -24.30386 -22.69060 -22.54930 -22.04694
-20.90659 -19.20468 -18.91983 -18.12079 -17.52454 -17.29708 -16.90381 -16.82047
-16.37902 -16.16703 -15.56962 -15.29490 -15.19636 -15.12391 -14.86099 -14.55231
-13.92565 -13.90391 -13.47900 -13.27734 -12.95160 -12.77315 -12.57254 -12.41473
-12.17046 -12.09446 -12.01305 -11.79229 -11.67794 -11.38277 -11.01557 -10.94012
-10.75177 -9.99062 -9.02242 -7.96791 -5.25983 0.50508 1.47657 1.50727
1.56881 1.75027 1.79060 1.83688 2.24619 2.56575 3.18230 3.25052
3.36712 3.44967 3.73281 3.80227 4.03025 4.10926 4.30920 4.36806
4.50282 4.58839 4.69187 4.75778 4.76770 4.86306 4.91528 4.95953
5.06873 5.30789 5.33087 5.48270 5.53385 5.66876 6.26043 6.33057
6.67271 6.88665 7.32459 7.40547 8.07098 8.31450 9.26409
Molecular weight = 283.14amu
Principal moments of inertia in cm(-1)
A = 0.054659 B = 0.002218 C = 0.002182
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 512.148024 B =12620.829828 C =12827.176459
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.968 5.968
2 C -0.075 4.075
3 Si 0.975 3.025
4 H -0.277 1.277
5 H -0.293 1.293
6 H -0.279 1.279
7 C -0.252 4.252
8 H 0.073 0.927
9 N -0.746 5.746
10 C 0.151 3.849
11 C -0.117 4.117
12 C 0.135 3.865
13 N -0.722 5.722
14 C 0.493 3.507
15 O -0.568 6.568
16 C -0.120 4.120
17 C -0.104 4.104
18 H 0.135 0.865
19 C -0.135 4.135
20 C 0.532 3.468
21 O -0.525 6.525
22 N -0.683 5.683
23 C 0.521 3.479
24 O -0.502 6.502
25 H 0.253 0.747
26 H 0.376 0.624
27 H 0.017 0.983
28 H 0.022 0.978
29 H 0.078 0.922
30 H 0.072 0.928
31 H 0.050 0.950
32 H 0.061 0.939
33 H 0.416 0.584
34 H 0.119 0.881
35 H 0.161 0.839
36 H 0.159 0.841
37 H 0.152 0.848
38 H 0.414 0.586
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.362 -27.737 -2.323 28.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.618 5.618
2 C -0.267 4.267
3 Si 0.804 3.196
4 H -0.203 1.203
5 H -0.219 1.219
6 H -0.205 1.205
7 C -0.383 4.383
8 H 0.091 0.909
9 N -0.390 5.390
10 C 0.024 3.976
11 C -0.155 4.155
12 C 0.010 3.990
13 N -0.375 5.375
14 C 0.281 3.719
15 O -0.446 6.446
16 C -0.160 4.160
17 C -0.126 4.126
18 H 0.153 0.847
19 C -0.174 4.174
20 C 0.323 3.677
21 O -0.400 6.400
22 N -0.347 5.347
23 C 0.310 3.690
24 O -0.373 6.373
25 H 0.062 0.938
26 H 0.208 0.792
27 H 0.035 0.965
28 H 0.040 0.960
29 H 0.097 0.903
30 H 0.090 0.910
31 H 0.068 0.932
32 H 0.079 0.921
33 H 0.253 0.747
34 H 0.137 0.863
35 H 0.179 0.821
36 H 0.176 0.824
37 H 0.170 0.830
38 H 0.253 0.747
Dipole moment (debyes) X Y Z Total
from point charges -3.244 -27.875 -2.057 28.138
hybrid contribution 0.218 1.107 0.872 1.426
sum -3.025 -26.768 -1.185 26.964
Atomic orbital electron populations
1.69790 1.06500 1.26303 1.59210 1.25590 0.96511 1.01147 1.03471
0.85193 0.77240 0.79017 0.78198 1.20333 1.21857 1.20496 1.19605
0.91528 0.85487 1.41723 0.90865 1.42531 1.05741 1.01124 1.89557
1.20691 0.94214 0.84958 0.97769 1.21687 0.98359 0.92150 1.03279
1.20981 0.91865 0.84828 1.01337 1.45909 1.11042 1.05142 1.75399
1.21364 0.90120 0.84865 0.75593 1.90792 1.18894 1.85109 1.49852
1.21739 0.97176 0.88042 1.09010 1.21891 0.99151 0.96161 0.95419
0.84732 1.22706 1.03982 0.94668 0.96019 1.21373 0.76152 0.83232
0.86969 1.90822 1.49574 1.23943 1.75663 1.44958 1.39439 1.26316
1.24024 1.21346 0.80525 0.78760 0.88415 1.90891 1.30170 1.48603
1.67678 0.93840 0.79156 0.96503 0.96020 0.90338 0.90960 0.93184
0.92081 0.74679 0.86317 0.82127 0.82354 0.82990 0.74687
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16
2 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16
3 Si 0.98 46.13 29.55 68.60 2.03 48.16 16
4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16
6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16
7 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16
8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16
9 N -0.75 -37.97 5.60 -343.45 -1.92 -39.89 16
10 C 0.15 5.96 6.26 86.38 0.54 6.50 16
11 C -0.12 -3.34 5.44 30.59 0.17 -3.18 16
12 C 0.13 3.47 5.67 86.38 0.49 3.96 16
13 N -0.72 -13.34 5.56 -463.07 -2.57 -15.92 16
14 C 0.49 9.55 7.52 87.66 0.66 10.21 16
15 O -0.57 -17.06 13.97 17.21 0.24 -16.82 16
16 C -0.12 -0.79 5.01 29.85 0.15 -0.64 16
17 C -0.10 -0.84 2.68 -10.93 -0.03 -0.87 16
18 H 0.13 1.18 7.89 -2.39 -0.02 1.17 16
19 C -0.13 -0.21 6.67 30.46 0.20 -0.01 16
20 C 0.53 5.65 8.55 87.99 0.75 6.40 16
21 O -0.53 -9.63 18.02 -2.87 -0.05 -9.68 16
22 N -0.68 -8.41 5.48 -427.78 -2.34 -10.75 16
23 C 0.52 8.75 7.72 87.99 0.68 9.42 16
24 O -0.50 -14.20 15.91 17.38 0.28 -13.92 16
25 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16
26 H 0.38 19.87 7.67 -92.71 -0.71 19.16 16
27 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16
28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16
29 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16
30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
31 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16
32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
33 H 0.42 4.88 8.47 -92.71 -0.79 4.09 16
34 H 0.12 0.40 8.12 -2.39 -0.02 0.38 16
35 H 0.16 -0.34 8.14 -2.39 -0.02 -0.36 16
36 H 0.16 -0.69 7.74 -2.38 -0.02 -0.71 16
37 H 0.15 -0.42 8.14 -2.39 -0.02 -0.43 16
38 H 0.41 4.72 8.96 -92.71 -0.83 3.89 16
Total: -1.00 -85.47 329.61 -0.36 -85.83
By element:
Atomic # 1 Polarization: 18.10 SS G_CDS: -1.21 Total: 16.88 kcal
Atomic # 6 Polarization: 9.65 SS G_CDS: 4.92 Total: 14.57 kcal
Atomic # 7 Polarization: -118.46 SS G_CDS: -6.56 Total: -125.02 kcal
Atomic # 8 Polarization: -40.89 SS G_CDS: 0.47 Total: -40.42 kcal
Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal
Total: -85.47 -0.36 -85.83 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001177595744.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.273 kcal
(2) G-P(sol) polarization free energy of solvation -85.470 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.742 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.828 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.101 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds