Wall clock time and date at job start Tue Mar 31 2020 02:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.87109 * 2 1 4 4 C 1.54316 * 109.88385 * 121.01512 * 2 1 3 5 5 H 1.09003 * 110.72351 * 215.74218 * 4 2 1 6 6 N 1.46893 * 110.72252 * 339.01906 * 4 2 1 7 7 C 1.46901 * 111.00564 * 199.97334 * 6 4 2 8 8 C 1.47197 * 109.47660 * 179.97438 * 7 6 4 9 9 N 5.81521 * 72.15584 * 102.02175 * 2 1 3 10 10 C 1.55158 * 102.94139 * 97.38021 * 4 2 1 11 11 C 1.54917 * 101.57978 * 35.50252 * 10 4 2 12 12 N 1.47020 * 110.01051 * 238.90671 * 2 1 3 13 13 C 1.34776 * 125.65281 * 59.48427 * 12 2 1 14 14 O 1.21285 * 119.99841 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00365 * 179.97438 * 13 12 2 16 16 S 1.80997 * 109.47230 * 179.97438 * 15 13 12 17 17 C 1.76203 * 100.00139 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99670 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00206 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99910 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99884 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47118 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46734 * 120.00195 * 21 19 17 24 24 H 1.48498 * 109.47200 * 239.99812 * 21 19 17 25 25 H 1.09005 * 109.46851 * 298.98311 * 1 2 3 26 26 H 1.08999 * 109.47141 * 58.98238 * 1 2 3 27 27 H 1.09001 * 109.46987 * 178.98227 * 1 2 3 28 28 H 1.00897 * 111.00064 * 323.92730 * 6 4 2 29 29 H 1.09004 * 109.46860 * 300.00296 * 7 6 4 30 30 H 1.09007 * 109.46949 * 59.99463 * 7 6 4 31 31 H 1.08998 * 111.00511 * 277.42784 * 10 4 2 32 32 H 1.08996 * 111.04098 * 153.59117 * 10 4 2 33 33 H 1.08998 * 110.36726 * 81.82993 * 11 10 4 34 34 H 1.09005 * 110.36534 * 204.15515 * 11 10 4 35 35 H 1.09004 * 109.47135 * 299.99842 * 15 13 12 36 36 H 1.08993 * 109.47035 * 59.99497 * 15 13 12 37 37 H 0.97005 * 119.99836 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 1 2.9642 -0.2792 1.6202 6 7 1.0254 -0.8028 2.2900 7 6 1.6245 -1.0677 3.6049 8 6 0.5655 -1.1153 4.6261 9 7 -0.2519 -1.1529 5.4141 10 6 2.3558 -2.1673 0.6944 11 6 2.8619 -1.8471 -0.7343 12 7 2.0331 -0.7134 -1.1830 13 6 1.7794 -0.3850 -2.4652 14 8 1.0808 0.5734 -2.7189 15 6 2.3639 -1.2085 -3.5839 16 16 1.8442 -0.5200 -5.1751 17 6 2.6469 -1.6423 -6.2709 18 1 3.2411 -2.4523 -5.8743 19 6 2.5156 -1.4854 -7.6437 20 7 1.7919 -0.4978 -8.1270 21 14 3.3672 -2.6748 -8.8054 22 1 4.1138 -3.6878 -8.0169 23 1 2.3519 -3.3549 -9.6492 24 1 4.3123 -1.9277 -9.6736 25 1 -0.3633 0.4980 0.8990 26 1 -0.3633 0.5296 -0.8807 27 1 -0.3633 -1.0275 -0.0183 28 1 0.4799 0.0459 2.3056 29 1 2.1485 -2.0232 3.5795 30 1 2.3295 -0.2732 3.8496 31 1 1.4505 -2.7735 0.6615 32 1 3.1310 -2.6583 1.2826 33 1 3.9135 -1.5617 -0.7091 34 1 2.7165 -2.7060 -1.3896 35 1 3.4518 -1.1910 -3.5179 36 1 2.0114 -2.2365 -3.5006 37 1 1.6998 -0.3884 -9.0864 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178147496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:13 Heat of formation + Delta-G solvation = 5.756164 kcal Electronic energy + Delta-G solvation = -19438.574409 eV Core-core repulsion = 16342.650671 eV Total energy + Delta-G solvation = -3095.923738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30589 -38.11821 -36.97557 -35.05331 -32.43773 -31.77048 -31.02301 -28.79928 -26.89816 -25.51024 -25.14022 -23.06282 -20.44786 -19.17773 -18.40529 -17.71550 -16.63954 -16.49728 -16.11408 -15.38008 -15.14937 -14.81201 -14.54416 -14.26196 -14.00045 -13.58289 -13.21468 -13.00557 -12.92751 -12.59400 -12.49532 -12.41978 -12.28067 -11.91006 -11.73542 -11.63299 -11.15351 -11.07668 -11.02249 -10.85618 -10.76102 -9.81359 -9.35723 -9.13719 -9.08202 -8.54474 -8.23651 -6.50990 -6.22593 -3.93129 2.17501 2.36926 2.85493 3.05368 3.20952 3.24578 3.30212 3.41293 3.60039 3.84816 4.09363 4.19828 4.35296 4.66080 4.72831 4.80272 4.98764 5.02043 5.12745 5.16670 5.30256 5.35190 5.44930 5.52731 5.61775 5.64855 5.83531 5.92010 6.02883 6.12912 6.30559 6.33800 6.52520 6.67135 7.12971 7.58955 7.65490 8.34572 8.55606 9.22913 10.84873 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.046011 B = 0.003006 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.406985 B = 9313.366502 C = 9702.904959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.074 0.926 4 C 0.078 3.922 5 H 0.070 0.930 6 N -0.673 5.673 7 C 0.152 3.848 8 C 0.209 3.791 9 N -0.424 5.424 10 C -0.122 4.122 11 C 0.099 3.901 12 N -0.621 5.621 13 C 0.550 3.450 14 O -0.513 6.513 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.354 0.646 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -2.763 21.427 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.092 0.908 4 C -0.032 4.032 5 H 0.088 0.912 6 N -0.309 5.309 7 C 0.021 3.979 8 C -0.110 4.110 9 N -0.102 5.102 10 C -0.161 4.161 11 C -0.025 4.025 12 N -0.359 5.359 13 C 0.339 3.661 14 O -0.386 6.386 15 C -0.297 4.297 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.177 0.823 29 H 0.136 0.864 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.080 -1.916 21.856 22.038 hybrid contribution 2.128 -1.068 -0.571 2.449 sum 4.208 -2.985 21.284 21.901 Atomic orbital electron populations 1.22032 0.94056 1.03149 1.02286 1.21460 0.95567 0.95554 0.84055 0.90807 1.22601 0.92910 0.97168 0.90541 0.91234 1.60644 1.24301 1.44126 1.01827 1.19436 0.89774 1.04645 0.84080 1.28990 0.94454 0.93338 0.94213 1.81250 1.09371 1.08610 1.10959 1.22883 1.02445 0.96038 0.94725 1.22312 0.94894 0.89898 0.95353 1.48501 1.51873 1.30874 1.04610 1.20008 0.80070 0.84724 0.81304 1.90697 1.37241 1.28208 1.82497 1.23506 1.03702 1.02554 0.99930 1.85408 1.66953 1.40474 0.90634 1.22892 1.36192 1.16041 0.93075 0.90886 1.24997 0.95278 0.95981 0.97376 1.70029 1.37379 1.29341 1.13519 0.86117 0.79082 0.80185 0.80101 1.19611 1.20569 1.20576 0.92208 0.90787 0.91659 0.82325 0.86362 0.90266 0.89227 0.89970 0.91311 0.90031 0.89337 0.89301 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.41 37.16 0.31 -1.43 16 2 C 0.14 1.42 3.40 -66.96 -0.23 1.19 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C 0.08 0.47 3.11 -65.89 -0.20 0.27 16 5 H 0.07 0.31 7.90 -51.93 -0.41 -0.10 16 6 N -0.67 -3.61 5.56 -107.87 -0.60 -4.21 16 7 C 0.15 0.51 6.02 -6.61 -0.04 0.47 16 8 C 0.21 1.49 15.69 -20.76 -0.33 1.16 16 9 N -0.42 -4.53 18.54 42.15 0.78 -3.75 16 10 C -0.12 -0.76 6.71 -24.58 -0.16 -0.93 16 11 C 0.10 0.90 6.69 -2.53 -0.02 0.88 16 12 N -0.62 -8.08 3.08 -163.01 -0.50 -8.58 16 13 C 0.55 10.08 7.65 -10.99 -0.08 10.00 16 14 O -0.51 -11.32 14.77 5.55 0.08 -11.24 16 15 C -0.15 -2.90 5.16 36.01 0.19 -2.72 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.53 -15.01 9.50 30.94 0.29 -14.71 16 18 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 21 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H 0.06 0.50 6.23 -51.93 -0.32 0.18 16 26 H 0.07 1.09 6.77 -51.93 -0.35 0.73 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.35 1.92 6.41 -39.29 -0.25 1.67 16 29 H 0.12 0.21 8.13 -51.93 -0.42 -0.21 16 30 H 0.08 0.10 8.09 -51.92 -0.42 -0.32 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.76 7.48 -51.93 -0.39 0.37 16 35 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 36 H 0.09 1.64 7.85 -51.92 -0.41 1.23 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -35.62 328.30 -7.22 -42.84 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -5.06 Total: -3.21 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.37 Total: -3.85 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.41 Total: -41.77 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.62 -7.22 -42.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.594 kcal (2) G-P(sol) polarization free energy of solvation -35.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds